Standard name | |
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Human Ortholog | |
Description | Putative RNA-binding protein; associates with mRNAs encoding cell wall proteins in high-throughput studies; deletion mutants display increased sensitivity to some cell wall disrupting agents; expression negatively regulated by cAMP |
ensLOC | DeepLoc | |||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Localization | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | WT1 | WT2 | WT3 | AF100 | AF140 | AF180 |
Cortical Patches | – | – | 0 | 3 | 0 | 1 | 3 | 4 | 2 | – | 1 | 3 | 1 | 3 | 0 | – | – | – | 0 | 0 | 2 | 0 | 3 | 1 |
Bud | – | – | 5 | 5 | 2 | 6 | 10 | 5 | 6 | – | 9 | 9 | 3 | 3 | 7 | – | – | – | 0 | 0 | 0 | 0 | 1 | 2 |
Bud Neck | – | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | – | – | – | 0 | 0 | 3 | 0 | 1 | 2 |
Bud Site | – | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | – | – | – | – | – | – | – | – | – |
Cell Periphery | – | – | 8 | 4 | 10 | 10 | 14 | 15 | 27 | – | 17 | 17 | 29 | 17 | 42 | – | – | – | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | – | – | 534 | 244 | 313 | 278 | 438 | 418 | 318 | – | 170 | 206 | 643 | 638 | 650 | – | – | – | 0 | 0 | 469 | 399 | 395 | 455 |
Endoplasmic Reticulum | – | – | 13 | 3 | 29 | 17 | 46 | 42 | 24 | – | 11 | 24 | 9 | 4 | 7 | – | – | – | 0 | 0 | 67 | 29 | 51 | 50 |
Endosome | – | – | 1 | 0 | 2 | 4 | 1 | 7 | 2 | – | 1 | 1 | 0 | 0 | 0 | – | – | – | 0 | 0 | 3 | 2 | 2 | 6 |
Golgi | – | – | 1 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | – | – | – | 0 | 0 | 3 | 0 | 1 | 2 |
Mitochondria | – | – | 14 | 32 | 33 | 107 | 207 | 237 | 238 | – | 197 | 237 | 0 | 0 | 4 | – | – | – | 0 | 0 | 36 | 2 | 5 | 2 |
Nucleus | – | – | 1 | 0 | 0 | 6 | 2 | 6 | 1 | – | 1 | 3 | 0 | 1 | 1 | – | – | – | 0 | 0 | 0 | 0 | 0 | 0 |
Nuclear Periphery | – | – | 1 | 0 | 2 | 0 | 1 | 4 | 6 | – | 0 | 3 | 0 | 0 | 0 | – | – | – | 0 | 0 | 1 | 0 | 1 | 0 |
Nucleolus | – | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | – | – | – | 0 | 0 | 0 | 0 | 0 | 0 |
Peroxisomes | – | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | – | – | – | 0 | 0 | 0 | 0 | 0 | 1 |
SpindlePole | – | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | – | – | – | 0 | 0 | 0 | 0 | 0 | 0 |
Vac/Vac Membrane | – | – | 12 | 3 | 8 | 6 | 42 | 33 | 25 | – | 11 | 26 | 0 | 1 | 1 | – | – | – | 0 | 0 | 13 | 9 | 5 | 10 |
Unique Cell Count | 562 | 266 | 362 | 363 | 629 | 662 | 510 | 336 | 412 | 652 | 647 | 659 | 1 | 1 | 607 | 452 | 477 | 546 | ||||||
Labelled Cell Count | 590 | 294 | 399 | 435 | 764 | 771 | 649 | 418 | 529 | 685 | 667 | 712 | 1 | 1 | 607 | 452 | 477 | 546 |
Screen | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | AF100 | AF140 | AF180 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Mean Cell GFP Intensity (1e-4) | – | – | 5.9 | 5.9 | 6.3 | 5.8 | 5.7 | 5.8 | 5.2 | – | 5.2 | 4.9 | 8.3 | 8.5 | 7.6 | – | – | – | 8.7 | 9.3 | 9.8 |
Std Deviation (1e-4) | – | – | 0.7 | 0.8 | 0.9 | 1.1 | 1.2 | 1.1 | 1.0 | – | 0.8 | 0.9 | 1.0 | 1.0 | 0.9 | – | – | – | 1.2 | 1.3 | 1.4 |
Intensity Change (Log2) | – | – | – | -0.02 | 0.1 | -0.03 | -0.05 | -0.03 | -0.18 | – | -0.18 | -0.27 | 0.49 | 0.52 | 0.36 | – | – | – | 0.56 | 0.65 | 0.73 |
Localization | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Cortical Patches | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | – | – | – |
Bud | 0 | 0 | 0 | 1.1 | 0 | 0.5 | – | 2.1 | 1.7 | 0 | 0 | 0.3 | – | – | – |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | – | – | – |
Bud Site | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | – | – | – |
Cell Periphery | 0 | 1.4 | 1.4 | 1.0 | 1.1 | 3.6 | – | 3.2 | 2.6 | 3.1 | 1.5 | 4.4 | – | – | – |
Cytoplasm | -1.9 | -4.6 | -8.4 | -11.3 | -13.4 | -13.2 | – | -15.7 | -16.2 | 3.6 | 3.6 | 3.7 | – | – | – |
Endoplasmic Reticulum | -1.2 | 4.1 | 2.0 | 4.0 | 3.4 | 2.1 | – | 0.9 | 2.8 | -1.2 | -2.5 | -1.7 | – | – | – |
Endosome | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | – | – | – |
Golgi | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | – | – | – |
Mitochondria | 5.6 | 4.5 | 11.9 | 13.5 | 14.4 | 17.0 | – | 19.2 | 19.4 | -4.1 | -4.0 | -2.7 | – | – | – |
Nucleus | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | – | – | – |
Nuclear Periphery | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | – | – | – |
Nucleolus | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | – | – | – |
Peroxisomes | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | – | – | – |
SpindlePole | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | – | – | – |
Vacuole | 0 | 0.1 | -0.5 | 3.8 | 2.6 | 2.5 | – | 1.0 | 3.3 | -3.7 | -3.3 | -3.4 | – | – | – |
R1 | R2 | R3 | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Concentration | 5.7156 | 6.9627 | 6.811 | 5.969 | 6.6304 | 6.2397 | 4.0746 | 5.3061 | 4.8218 | 4.6793 | 4.7833 | 5.0209 | 8.9026 | 9.1922 | 9.3096 | 9.1947 | 9.6673 | 9.3477 |
Actin | 0.008 | 0.0021 | 0.0146 | 0.1204 | 0.0009 | 0.001 | 0.0053 | 0.0025 | 0.0056 | 0.001 | 0.0015 | 0.0018 | 0.0707 | 0.0024 | 0.015 | 0.0035 | 0.0447 | 0.0014 |
Bud | 0.0002 | 0.0022 | 0.0012 | 0.0006 | 0.0001 | 0.0002 | 0.0002 | 0.0038 | 0.0014 | 0.0003 | 0.0003 | 0.0011 | 0.0008 | 0.0003 | 0.0007 | 0.0007 | 0.0012 | 0.0008 |
Bud Neck | 0.0005 | 0.0004 | 0.0038 | 0.0018 | 0.0004 | 0.0017 | 0.0005 | 0.0004 | 0.0009 | 0.0004 | 0.0012 | 0.002 | 0.0128 | 0.0003 | 0.0005 | 0.0003 | 0.001 | 0.0048 |
Bud Periphery | 0.0003 | 0.0008 | 0.001 | 0.0011 | 0.0002 | 0.0003 | 0.0002 | 0.0012 | 0.0009 | 0.0002 | 0.0001 | 0.0009 | 0.0013 | 0.0001 | 0.0009 | 0.0003 | 0.0018 | 0.0005 |
Bud Site | 0.0004 | 0.0102 | 0.0228 | 0.001 | 0.0001 | 0.0002 | 0.0005 | 0.006 | 0.0063 | 0.0002 | 0.0002 | 0.0049 | 0.0037 | 0.0034 | 0.0029 | 0.0002 | 0.0026 | 0.0022 |
Cell Periphery | 0.001 | 0.0011 | 0.0021 | 0.0056 | 0.0013 | 0.0006 | 0.0004 | 0.0012 | 0.0007 | 0.0001 | 0.0001 | 0.0008 | 0.0005 | 0.0004 | 0.0007 | 0.0001 | 0.0003 | 0.0002 |
Cytoplasm | 0.5988 | 0.8691 | 0.7909 | 0.5534 | 0.8719 | 0.7898 | 0.7354 | 0.8324 | 0.7666 | 0.7706 | 0.826 | 0.7764 | 0.6386 | 0.8821 | 0.7787 | 0.7149 | 0.7461 | 0.84 |
Cytoplasmic Foci | 0.0062 | 0.0089 | 0.0123 | 0.0201 | 0.0038 | 0.0221 | 0.0188 | 0.0208 | 0.0144 | 0.0155 | 0.0283 | 0.019 | 0.0303 | 0.0207 | 0.0208 | 0.019 | 0.0277 | 0.0266 |
Eisosomes | 0.0001 | 0 | 0.0001 | 0.0007 | 0 | 0 | 0.0003 | 0 | 0.0001 | 0 | 0 | 0 | 0.0005 | 0 | 0.0001 | 0 | 0.0006 | 0 |
Endoplasmic Reticulum | 0.2064 | 0.0682 | 0.1022 | 0.0903 | 0.0957 | 0.0956 | 0.119 | 0.0575 | 0.1238 | 0.1362 | 0.0531 | 0.0875 | 0.1113 | 0.0454 | 0.084 | 0.1588 | 0.037 | 0.0701 |
Endosome | 0.0484 | 0.0147 | 0.018 | 0.0603 | 0.0111 | 0.0364 | 0.0679 | 0.0382 | 0.0452 | 0.0439 | 0.0554 | 0.0595 | 0.0399 | 0.0259 | 0.0446 | 0.0755 | 0.0598 | 0.0375 |
Golgi | 0.0123 | 0.0017 | 0.0046 | 0.0139 | 0.0018 | 0.004 | 0.0058 | 0.0079 | 0.0079 | 0.0046 | 0.0114 | 0.0052 | 0.0123 | 0.0045 | 0.0141 | 0.0078 | 0.0217 | 0.0046 |
Lipid Particles | 0.0013 | 0.0004 | 0.0018 | 0.0064 | 0.0002 | 0.0005 | 0.0015 | 0.0008 | 0.0008 | 0.0001 | 0.0004 | 0.0006 | 0.004 | 0.0009 | 0.0055 | 0.0007 | 0.0078 | 0.0002 |
Mitochondria | 0.0035 | 0.0011 | 0.0012 | 0.0027 | 0.0013 | 0.0074 | 0.0051 | 0.0031 | 0.0068 | 0.0043 | 0.0041 | 0.0115 | 0.0134 | 0.0008 | 0.0064 | 0.0012 | 0.0237 | 0.0021 |
None | 0.0543 | 0.0063 | 0.0095 | 0.0729 | 0.0035 | 0.0248 | 0.016 | 0.0098 | 0.0057 | 0.0074 | 0.0047 | 0.0074 | 0.0093 | 0.0058 | 0.0056 | 0.0048 | 0.0023 | 0.0038 |
Nuclear Periphery | 0.0258 | 0.0034 | 0.0042 | 0.0097 | 0.0023 | 0.0029 | 0.0079 | 0.0024 | 0.004 | 0.0058 | 0.0026 | 0.0035 | 0.0144 | 0.0017 | 0.0045 | 0.0053 | 0.01 | 0.0013 |
Nucleolus | 0.0003 | 0.0002 | 0.0005 | 0.0002 | 0 | 0.0001 | 0.0001 | 0.0002 | 0.0001 | 0 | 0 | 0.0003 | 0.0008 | 0.0001 | 0.0001 | 0 | 0.0007 | 0 |
Nucleus | 0.0211 | 0.0017 | 0.0033 | 0.0027 | 0.0011 | 0.0022 | 0.003 | 0.0023 | 0.0022 | 0.0023 | 0.0021 | 0.0046 | 0.0242 | 0.0012 | 0.0017 | 0.0016 | 0.0035 | 0.001 |
Peroxisomes | 0.0001 | 0.0001 | 0.0005 | 0.0073 | 0 | 0.0001 | 0.0012 | 0.0002 | 0.0004 | 0.0001 | 0.0004 | 0.0004 | 0.0028 | 0.0002 | 0.0072 | 0.0001 | 0.0013 | 0.0003 |
Punctate Nuclear | 0.0022 | 0.0005 | 0.0014 | 0.0019 | 0.0001 | 0.0045 | 0.0007 | 0.0012 | 0.0005 | 0.0004 | 0.0003 | 0.0024 | 0.0024 | 0.0005 | 0.0009 | 0.0003 | 0.0014 | 0.0003 |
Vacuole | 0.0069 | 0.006 | 0.0036 | 0.0252 | 0.0032 | 0.0047 | 0.0083 | 0.0071 | 0.0047 | 0.0048 | 0.0063 | 0.0079 | 0.004 | 0.0028 | 0.004 | 0.0036 | 0.0022 | 0.0017 |
Vacuole Periphery | 0.0019 | 0.0008 | 0.0005 | 0.0016 | 0.0008 | 0.0011 | 0.0017 | 0.001 | 0.001 | 0.0018 | 0.0016 | 0.0024 | 0.002 | 0.0006 | 0.0011 | 0.0012 | 0.0026 | 0.0006 |
R1 | R2 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Gene Expression | 21.2255 | 22.3057 | 18.9163 | 28.4729 | 29.6206 | 25.5861 | 27.2397 | 32.3219 | 28.3776 | 34.4739 |
Translational Efficiency | 0.7747 | 0.8295 | 0.6721 | 0.559 | 0.6113 | 0.7232 | 0.6359 | 0.4947 | 0.5719 | 0.6151 |
Dataset | Hit |
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Protein Concentration | ✔ |
Protein Localization | ✘ |
Gene Expression | ✘ |
Translational Efficiency | ✘ |
Temp | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Vph1-GFP) |
---|---|---|---|---|
37℃ | ||||
RT |
Gene / Allele | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Sac6-tdTomato) |
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Gene | Images |
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Gene | Images |
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