Standard name | |
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Human Ortholog | |
Description | DNA binding protein that recognizes oligo(dA).oligo(dT) tracts; Arg side chain in its N-terminal pentad Gly-Arg-Lys-Pro-Gly repeat is required for DNA-binding; relocalizes to the cytosol in response to hypoxia; not essential for viability |
ensLOC | DeepLoc | |||||||||||||||||||||||
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Localization | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | WT1 | WT2 | WT3 | AF100 | AF140 | AF180 |
Cortical Patches | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 3 | 3 | 2 | 2 | 5 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 1 | 0 | 0 | 2 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 5 | 2 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 2 | 2 | 6 | 9 | 10 | 16 | 17 | 0 | 0 | 0 | 0 | 0 | 0 | – | – | – | – | – | – |
Cell Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 4 | 5 | 8 | 6 | 12 | 11 | 11 | 19 | 7 | 14 | 12 | 12 | 6 | 23 | 33 | 7 | 6 | 2 | 0 | 1 | 1 | 1 | 3 | 4 |
Endoplasmic Reticulum | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 2 | 0 | 0 | 0 | 0 | 0 | 3 |
Endosome | 0 | 1 | 2 | 0 | 4 | 0 | 3 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 1 | 2 | 1 | 0 | 0 | 2 | 2 | 1 | 0 | 7 |
Golgi | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Mitochondria | 2 | 19 | 1 | 1 | 0 | 18 | 32 | 33 | 127 | 103 | 84 | 131 | 1 | 1 | 1 | 0 | 1 | 2 | 1 | 1 | 0 | 0 | 0 | 3 |
Nucleus | 116 | 232 | 231 | 186 | 233 | 308 | 319 | 353 | 265 | 323 | 284 | 333 | 82 | 163 | 165 | 48 | 47 | 65 | 123 | 224 | 230 | 85 | 113 | 79 |
Nuclear Periphery | 0 | 0 | 0 | 0 | 1 | 4 | 3 | 2 | 4 | 6 | 2 | 6 | 0 | 1 | 1 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 1 | 2 |
Nucleolus | 4 | 0 | 3 | 1 | 0 | 6 | 11 | 15 | 31 | 40 | 39 | 49 | 1 | 1 | 2 | 3 | 0 | 5 | 0 | 2 | 2 | 2 | 7 | 19 |
Peroxisomes | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 0 | 1 | 1 | 1 | 1 | 3 | 9 | 6 | 3 | 5 | 3 | 8 | 0 | 1 | 3 | 0 | 0 | 1 | 0 | 1 | 0 | 0 | 2 | 3 |
Vac/Vac Membrane | 3 | 0 | 4 | 1 | 7 | 2 | 6 | 6 | 2 | 4 | 5 | 2 | 4 | 3 | 7 | 3 | 4 | 2 | 2 | 6 | 8 | 6 | 21 | 41 |
Unique Cell Count | 123 | 242 | 248 | 195 | 254 | 333 | 355 | 401 | 321 | 396 | 349 | 418 | 94 | 189 | 206 | 63 | 60 | 75 | 130 | 247 | 250 | 101 | 154 | 172 |
Labelled Cell Count | 129 | 258 | 250 | 196 | 258 | 355 | 397 | 449 | 453 | 508 | 447 | 563 | 95 | 193 | 216 | 64 | 60 | 81 | 130 | 247 | 250 | 101 | 154 | 172 |
Screen | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | AF100 | AF140 | AF180 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Mean Cell GFP Intensity (1e-4) | 8.6 | 6.1 | 8.3 | 7.8 | 7.4 | 5.8 | 5.5 | 5.8 | 4.6 | 4.9 | 5.0 | 4.8 | 7.8 | 7.4 | 7.1 | 8.8 | 10.0 | 10.3 | 9.1 | 9.2 | 8.7 |
Std Deviation (1e-4) | 2.8 | 1.1 | 1.4 | 1.4 | 1.6 | 1.1 | 1.2 | 1.4 | 1.1 | 1.1 | 1.1 | 0.9 | 1.6 | 1.5 | 1.7 | 4.1 | 3.1 | 3.0 | 1.4 | 1.4 | 1.8 |
Intensity Change (Log2) | – | – | – | -0.08 | -0.17 | -0.52 | -0.6 | -0.51 | -0.85 | -0.74 | -0.74 | -0.8 | -0.09 | -0.17 | -0.21 | 0.1 | 0.28 | 0.32 | 0.14 | 0.15 | 0.08 |
Localization | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Cortical Patches | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 3.4 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cell Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | -0.1 | 0.9 | 0.1 | -0.1 | 0.9 | -0.8 | 0.2 | 0.1 | -0.3 | 0 | 3.6 | 4.7 | 0 | 0 | 0 |
Endoplasmic Reticulum | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Endosome | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Golgi | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Mitochondria | 0 | 0 | 3.4 | 4.6 | 4.3 | 0 | 8.6 | 8.2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleus | 1.0 | -0.6 | -0.3 | -1.4 | -2.1 | -3.7 | -4.1 | -4.1 | -4.7 | -1.8 | -2.4 | -4.1 | -4.0 | -3.5 | -1.8 |
Nuclear Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleolus | 0 | 0 | 0 | 1.5 | 1.9 | 0 | 4.4 | 4.7 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Peroxisomes | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Vacuole | 0 | 0.9 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
R1 | R2 | R3 | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Concentration | 3.9038 | 3.1198 | 3.2204 | 2.9352 | 3.2519 | 3.0399 | 6.4392 | 7.2953 | 7.4512 | 6.7496 | 6.5695 | 6.8108 | 4.5174 | 4.8003 | 4.4368 | 4.6359 | 3.8484 | 4.5037 |
Actin | 0 | 0 | 0 | 0 | 0 | 0.0001 | 0.0012 | 0 | 0.0055 | 0 | 0.0007 | 0.0002 | 0.0105 | 0 | 0.008 | 0.0012 | 0.0025 | 0.0012 |
Bud | 0 | 0 | 0 | 0 | 0 | 0 | 0.0002 | 0 | 0.0003 | 0.0001 | 0.0002 | 0.0001 | 0.0002 | 0 | 0.0006 | 0.0001 | 0.0002 | 0 |
Bud Neck | 0 | 0 | 0 | 0 | 0.0002 | 0.0004 | 0.0005 | 0 | 0.001 | 0.0002 | 0.0011 | 0.0006 | 0.0008 | 0 | 0.0014 | 0.0001 | 0.0002 | 0.0003 |
Bud Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0.0004 | 0 | 0.0006 | 0.0002 | 0.0006 | 0.0001 | 0.0003 | 0 | 0.0013 | 0.0001 | 0.0006 | 0.0001 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 0 | 0.0003 | 0 | 0.0023 | 0.0002 | 0.0003 | 0.0001 | 0.0019 | 0 | 0.0033 | 0.001 | 0.0015 | 0 |
Cell Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0.0001 | 0 | 0.0003 | 0.0001 | 0.0002 | 0 | 0.0001 | 0 | 0.0004 | 0 | 0.0002 | 0 |
Cytoplasm | 0 | 0.0001 | 0 | 0 | 0 | 0.0001 | 0.0175 | 0 | 0.0138 | 0.0001 | 0.0008 | 0.0013 | 0.0002 | 0.0001 | 0.0004 | 0.0001 | 0.0001 | 0.0002 |
Cytoplasmic Foci | 0 | 0 | 0 | 0 | 0 | 0.002 | 0.0023 | 0 | 0.0104 | 0 | 0.0002 | 0.0012 | 0.0123 | 0 | 0.0062 | 0.0075 | 0.0011 | 0.0001 |
Eisosomes | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.0001 | 0 | 0 | 0 | 0.0001 | 0 | 0.0001 | 0 | 0.0002 | 0.0002 |
Endoplasmic Reticulum | 0 | 0 | 0 | 0 | 0 | 0 | 0.007 | 0 | 0.0063 | 0 | 0.0015 | 0.0003 | 0.0003 | 0 | 0.0004 | 0 | 0.0002 | 0.0001 |
Endosome | 0 | 0 | 0 | 0 | 0 | 0.001 | 0.0224 | 0 | 0.0218 | 0.0001 | 0.0008 | 0.0083 | 0.0081 | 0 | 0.0042 | 0.006 | 0.0022 | 0.0002 |
Golgi | 0 | 0 | 0 | 0 | 0 | 0.0003 | 0.0042 | 0 | 0.0055 | 0 | 0.0001 | 0.0004 | 0.006 | 0 | 0.0038 | 0.0059 | 0.0024 | 0.0001 |
Lipid Particles | 0 | 0 | 0 | 0 | 0 | 0.0005 | 0.0026 | 0 | 0.0217 | 0 | 0.0006 | 0.0004 | 0.0218 | 0 | 0.0106 | 0.004 | 0.0447 | 0.0002 |
Mitochondria | 0.0001 | 0.0001 | 0 | 0.0001 | 0.0001 | 0.0001 | 0.0018 | 0 | 0.0045 | 0.0006 | 0.0025 | 0.0008 | 0.0033 | 0.0001 | 0.0124 | 0.0034 | 0.042 | 0.0003 |
None | 0 | 0 | 0 | 0 | 0 | 0.0001 | 0.0065 | 0 | 0.007 | 0 | 0.0004 | 0.0003 | 0.0003 | 0 | 0.0006 | 0 | 0.0002 | 0.0044 |
Nuclear Periphery | 0.0001 | 0.001 | 0.0006 | 0.0006 | 0.0004 | 0.0002 | 0.019 | 0.0007 | 0.0132 | 0.0007 | 0.0286 | 0.0038 | 0.0013 | 0.0026 | 0.0015 | 0.0002 | 0.0006 | 0.0005 |
Nucleolus | 0.0105 | 0.0099 | 0.0071 | 0.0057 | 0.0484 | 0.0261 | 0.0099 | 0.0057 | 0.0052 | 0.0352 | 0.0329 | 0.0225 | 0.0098 | 0.0109 | 0.0057 | 0.007 | 0.0256 | 0.0217 |
Nucleus | 0.9891 | 0.9868 | 0.992 | 0.9933 | 0.9501 | 0.9678 | 0.8952 | 0.9934 | 0.8662 | 0.9614 | 0.9214 | 0.9555 | 0.9043 | 0.9858 | 0.9274 | 0.9569 | 0.8686 | 0.9696 |
Peroxisomes | 0 | 0 | 0 | 0 | 0 | 0.0006 | 0.0002 | 0 | 0.0028 | 0 | 0.0001 | 0.0005 | 0.0132 | 0 | 0.0063 | 0.0059 | 0.0047 | 0.0001 |
Punctate Nuclear | 0.0001 | 0.002 | 0.0002 | 0.0001 | 0.0007 | 0.0007 | 0.0043 | 0.0001 | 0.007 | 0.0001 | 0.0041 | 0.0028 | 0.0043 | 0.0001 | 0.0022 | 0.0002 | 0.0003 | 0.0003 |
Vacuole | 0 | 0 | 0 | 0 | 0 | 0 | 0.0034 | 0 | 0.0034 | 0.0008 | 0.0014 | 0.0004 | 0.0005 | 0.0001 | 0.0018 | 0.0002 | 0.0009 | 0.0001 |
Vacuole Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0.0011 | 0 | 0.0013 | 0.0003 | 0.0018 | 0.0004 | 0.0004 | 0.0001 | 0.0015 | 0.0001 | 0.0009 | 0.0001 |
R1 | R2 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Gene Expression | 30.2808 | 34.3317 | 27.4353 | 28.3327 | 37.3453 | 22.1444 | 25.0332 | 24.3299 | 21.4018 | 26.3078 |
Translational Efficiency | 1.4074 | 1.1583 | 1.2191 | 1.025 | 1.0794 | 1.6409 | 0.9461 | 1.242 | 1.037 | 1.2199 |
Dataset | Hit |
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Protein Concentration | ✘ |
Protein Localization | ✘ |
Gene Expression | ✘ |
Translational Efficiency | ✘ |
Temp | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Vph1-GFP) |
---|---|---|---|---|
37℃ | ||||
RT |
Gene / Allele | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Sac6-tdTomato) |
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Gene | Images |
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Gene | Images |
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