Standard name
Human Ortholog
Description Protein that interacts with Rab GTPases; localized to late Golgi vesicles; computational analysis of large-scale protein-protein interaction data suggests a possible role in vesicle-mediated transport
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Micrographs

ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Neck 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Site 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 – – – – – –
Cell Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cytoplasm 0.86 0.93 1.0 0.96 0.98 0.95 0.88 0.89 0.75 0.81 0.67 0.69 1.0 0.99 0.99 0.91 0.91 0.89 0.49 0.71 0.72 0.78 0.75 0.73
Endoplasmic Reticulum 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.06 0.05 0 0.13 0 0.05 0 0 0
Endosome 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Golgi 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Mitochondria 0.15 0 0.06 0 0 0.1 0.18 0.12 0.37 0.23 0.52 0.32 0 0 0 0 0 0 0.23 0.11 0.12 0.12 0.09 0.1
Nucleus 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nuclear Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nucleolus 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Peroxisomes 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
SpindlePole 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Vac/Vac Membrane 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.05 0.06 0 0 0 0
ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 1 0 0 0 0 0 0 1 1 0 1 3 0 0 0 7 6 7 7 1 0 1 4 7
Bud 2 0 0 1 0 1 9 8 7 5 12 9 0 1 0 1 5 5 0 0 0 0 6 2
Bud Neck 0 0 0 2 3 1 3 13 8 10 1 3 3 1 4 4 2 1 2 2 0 0 2 6
Bud Site 0 0 0 0 0 0 0 1 1 1 1 1 0 0 0 0 0 0 – – – – – –
Cell Periphery 0 0 0 1 3 4 1 1 1 1 1 0 1 3 3 10 7 10 0 0 0 2 6 7
Cytoplasm 179 102 16 160 261 238 382 353 196 311 215 218 266 370 463 277 271 227 117 86 36 150 251 307
Endoplasmic Reticulum 8 3 0 1 2 0 0 0 1 1 4 11 1 0 1 18 16 10 31 3 2 2 5 7
Endosome 0 1 0 0 1 0 2 1 1 5 1 0 0 1 0 6 8 10 6 2 0 1 4 7
Golgi 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 4 0 1 0 0 1 1
Mitochondria 32 3 1 4 0 25 78 49 96 89 169 101 1 1 2 4 5 5 53 13 5 23 29 40
Nucleus 0 0 0 2 2 1 1 2 1 0 2 1 0 0 0 0 2 0 0 0 0 0 1 0
Nuclear Periphery 0 1 0 0 0 0 2 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
Nucleolus 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Peroxisomes 0 0 0 0 0 1 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
SpindlePole 0 0 0 0 1 2 4 7 2 7 4 3 0 0 0 1 2 2 1 0 0 1 3 6
Vac/Vac Membrane 2 1 0 3 1 4 2 2 3 8 3 5 0 1 3 6 8 6 11 7 2 3 7 13
Unique Cell Count 208 110 16 167 266 251 436 397 261 386 323 316 267 373 468 306 298 255 238 122 51 194 335 420
Labelled Cell Count 224 111 17 175 274 277 486 438 318 440 414 355 272 378 476 336 334 287 238 122 51 194 335 420


Cytoplasm

(Huh et al. Nature 2003 425:686)
Screen WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 AF100 AF140 AF180
Mean Cell GFP Intensity (1e-4) 3.5 4.4 3.9 4.6 5.0 4.3 3.9 4.2 3.8 3.8 3.5 3.7 5.2 5.2 5.1 5.9 6.6 6.6 4.5 5.0 5.1
Std Deviation (1e-4) 0.4 0.7 0.6 1.3 1.3 1.3 1.2 0.9 1.6 1.1 1.0 0.7 1.2 0.9 1.4 1.0 1.6 1.8 0.7 1.6 1.4
Intensity Change (Log2) – – – 0.21 0.34 0.13 -0.01 0.08 -0.06 -0.05 -0.19 -0.1 0.39 0.4 0.38 0.59 0.73 0.74 0.18 0.33 0.38


Localization RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3
Actin – – – – – – – – – – – – – – –
Bud – – – – – – – – – – – – – – –
Bud Neck – – – – – – – – – – – – – – –
Bud Site – – – – – – – – – – – – – – –
Cell Periphery – – – – – – – – – – – – – – –
Cyto – – – – – – – – – – – – – – –
Endoplasmic Reticulum – – – – – – – – – – – – – – –
Endosome – – – – – – – – – – – – – – –
Golgi – – – – – – – – – – – – – – –
Mitochondria – – – – – – – – – – – – – – –
Nuclear Periphery – – – – – – – – – – – – – – –
Nuc – – – – – – – – – – – – – – –
Nucleolus – – – – – – – – – – – – – – –
Peroxisomes – – – – – – – – – – – – – – –
SpindlePole – – – – – – – – – – – – – – –
Vac – – – – – – – – – – – – – – –
Cortical Patches – – – – – – – – – – – – – – –
Cytoplasm – – – – – – – – – – – – – – –
Nucleus – – – – – – – – – – – – – – –
Vacuole – – – – – – – – – – – – – – –

Images

Circle plot not available

Protein Concentration and Protein Localization Data

R1 R2 R3
G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase
Concentration 1.767 1.6526 1.5782 -0.8178 0.1373 0.0883 -0.4169 0.1092 -0.1568 -0.3699 -0.2963 -0.1442 -1.1532 -1.0282 -1.0649 -1.0211 -0.705 -1.1292
Actin 0.0198 0.0018 0.0134 0.0023 0.0256 0.0035 0.0167 0.001 0.0047 0.0066 0.0178 0.003 0.0232 0.001 0.0127 0.0042 0.0476 0.004
Bud 0.0013 0.0035 0.0057 0.0002 0.0038 0.001 0.0004 0.0025 0.0011 0.0002 0.0004 0.0002 0.0014 0.0074 0.0008 0.0003 0.0007 0.0015
Bud Neck 0.0012 0.0003 0.0007 0.0002 0.0011 0.0015 0.0074 0.0007 0.0018 0.0004 0.0009 0.0005 0.0018 0.0042 0.0005 0.0002 0.0005 0.0023
Bud Periphery 0.0008 0.0036 0.0083 0.0003 0.0069 0.0008 0.0007 0.0011 0.002 0.0003 0.0006 0.0003 0.0024 0.0039 0.0022 0.0004 0.0007 0.0011
Bud Site 0.0084 0.0192 0.0113 0.0002 0.0241 0.0043 0.0099 0.0136 0.012 0.0012 0.0014 0.0001 0.0083 0.0203 0.0053 0.0006 0.0019 0.0004
Cell Periphery 0.0007 0.0006 0.0005 0.0001 0.0005 0.0001 0.0005 0.0002 0.0003 0.0002 0.0001 0.0001 0.0007 0.0004 0.0004 0.0001 0.0001 0.0001
Cytoplasm 0.0985 0.1239 0.1125 0.1978 0.0604 0.1747 0.1072 0.1381 0.1539 0.0847 0.1398 0.2176 0.1534 0.2697 0.2422 0.1655 0.0882 0.3255
Cytoplasmic Foci 0.0345 0.0132 0.0273 0.0161 0.0296 0.0285 0.0296 0.0074 0.0202 0.0265 0.0619 0.008 0.0213 0.0135 0.0253 0.0206 0.0877 0.0274
Eisosomes 0.0004 0.0004 0.0004 0.0001 0.0005 0.0002 0.0003 0.0001 0.0002 0.0002 0.0011 0.0001 0.0004 0.0004 0.0005 0.0002 0.0001 0.0001
Endoplasmic Reticulum 0.0075 0.0038 0.0049 0.0045 0.0041 0.0058 0.0074 0.0039 0.0044 0.0012 0.0018 0.0054 0.0097 0.011 0.0115 0.0051 0.0009 0.0125
Endosome 0.0494 0.0059 0.0204 0.0173 0.1251 0.01 0.0159 0.0026 0.0173 0.0279 0.0124 0.005 0.0187 0.007 0.0221 0.0199 0.0322 0.0083
Golgi 0.0098 0.0004 0.0096 0.0077 0.0377 0.0014 0.0048 0.0002 0.0013 0.0087 0.01 0.0012 0.0078 0.0005 0.0079 0.0013 0.0247 0.0056
Lipid Particles 0.0237 0.002 0.0226 0.0074 0.0513 0.0036 0.0107 0.0007 0.006 0.0647 0.023 0.0052 0.0121 0.0017 0.01 0.0037 0.0596 0.0078
Mitochondria 0.0227 0.023 0.0332 0.0331 0.0279 0.0079 0.0039 0.0007 0.0014 0.0063 0.0055 0.0009 0.0199 0.0009 0.023 0.0013 0.0044 0.0147
None 0.647 0.7859 0.6999 0.7022 0.5368 0.7302 0.7315 0.812 0.7519 0.7346 0.6642 0.7417 0.6922 0.6479 0.611 0.7543 0.5758 0.5703
Nuclear Periphery 0.0182 0.0027 0.0035 0.0018 0.0236 0.0068 0.0125 0.0015 0.0022 0.002 0.0102 0.0016 0.0045 0.0033 0.0048 0.0083 0.0007 0.0028
Nucleolus 0.0047 0.0009 0.0009 0.0002 0.0012 0.001 0.0038 0.0007 0.0012 0.0008 0.0029 0.0002 0.0009 0.0002 0.0007 0.0007 0.0001 0.0003
Nucleus 0.0083 0.0034 0.0017 0.0012 0.004 0.002 0.0048 0.0043 0.0025 0.0016 0.0033 0.0016 0.0019 0.0021 0.0021 0.003 0.0002 0.0019
Peroxisomes 0.0177 0.0008 0.0166 0.0036 0.017 0.0086 0.0139 0.0003 0.0052 0.0217 0.024 0.004 0.0105 0.0006 0.008 0.001 0.0664 0.0094
Punctate Nuclear 0.0079 0.0017 0.0027 0.0012 0.0061 0.0063 0.0139 0.0072 0.0072 0.0045 0.0172 0.0024 0.0043 0.0011 0.004 0.0045 0.0064 0.0022
Vacuole 0.0135 0.002 0.0028 0.0016 0.0082 0.0012 0.0024 0.001 0.0028 0.004 0.0005 0.0009 0.0036 0.0025 0.004 0.0035 0.0008 0.0012
Vacuole Periphery 0.0042 0.001 0.0011 0.0007 0.0045 0.0004 0.0015 0.0001 0.0005 0.0018 0.0008 0.0002 0.0009 0.0004 0.0011 0.0012 0.0004 0.0004

Sequencing Data

R1 R2
G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Post-START S/G2 Metaphase Anaphase Telophase
Gene Expression 31.34 31.7163 29.8108 41.7562 34.5003 34.2776 45.4301 48.3381 50.2759 44.0126
Translational Efficiency 1.6355 1.4587 1.8596 1.5993 1.4211 1.9144 1.3115 1.2272 1.4937 1.2159

Hit Data

Dataset Hit
Protein Concentration ✘
Protein Localization ✘
Gene Expression ✔
Translational Efficiency ✘
Standard name
Human Ortholog
Description Protein that interacts with Rab GTPases; localized to late Golgi vesicles; computational analysis of large-scale protein-protein interaction data suggests a possible role in vesicle-mediated transport
Localization
Cell Percentages cytoplasm (43%)
Cell Cycle Regulation No
Subcompartmental Group cytoplasm-9

Yip5

Yip5


Nearest neighbours ( genes)

correlation threshold

0.6

1.0

0.80


Biological Process (Gene Ontology)
Molecular Function (Gene Ontology)
Cellular Component (Gene Ontology)

Endocytosis
Temp Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Vph1-GFP)
37℃
RT
Cell Cycle Omics

CYCLoPs (Yip5-GFP)
Gene / Allele Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Sac6-tdTomato)
Gene Images
Gene Images
Images are not yet available
Images are not yet available