Standard name
Description Protein that interacts with Rab GTPases; localized to late Golgi vesicles; computational analysis of large-scale protein-protein interaction data suggests a possible role in vesicle-mediated transport

Micrographs

ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Neck 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Site 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cell Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cytoplasm 0.86 0.93 1.0 0.96 0.98 0.95 0.88 0.89 0.75 0.81 0.67 0.69 1.0 0.99 0.99 0.91 0.91 0.89 0.49 0.71 0.72 0.78 0.75 0.73
Endoplasmic Reticulum 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.06 0.05 0 0.13 0 0.05 0 0 0
Endosome 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Golgi 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Mitochondria 0.15 0 0.06 0 0 0.1 0.18 0.12 0.37 0.23 0.52 0.32 0 0 0 0 0 0 0.23 0.11 0.12 0.12 0.09 0.1
Nucleus 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nuclear Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nucleolus 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Peroxisomes 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
SpindlePole 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Vac/Vac Membrane 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.05 0.06 0 0 0 0
ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 1 0 0 0 0 0 0 1 1 0 1 3 0 0 0 7 6 7 7 1 0 1 4 7
Bud 2 0 0 1 0 1 9 8 7 5 12 9 0 1 0 1 5 5 0 0 0 0 6 2
Bud Neck 0 0 0 2 3 1 3 13 8 10 1 3 3 1 4 4 2 1 2 2 0 0 2 6
Bud Site 0 0 0 0 0 0 0 1 1 1 1 1 0 0 0 0 0 0
Cell Periphery 0 0 0 1 3 4 1 1 1 1 1 0 1 3 3 10 7 10 0 0 0 2 6 7
Cytoplasm 179 102 16 160 261 238 382 353 196 311 215 218 266 370 463 277 271 227 117 86 36 150 251 307
Endoplasmic Reticulum 8 3 0 1 2 0 0 0 1 1 4 11 1 0 1 18 16 10 31 3 2 2 5 7
Endosome 0 1 0 0 1 0 2 1 1 5 1 0 0 1 0 6 8 10 6 2 0 1 4 7
Golgi 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 4 0 1 0 0 1 1
Mitochondria 32 3 1 4 0 25 78 49 96 89 169 101 1 1 2 4 5 5 53 13 5 23 29 40
Nucleus 0 0 0 2 2 1 1 2 1 0 2 1 0 0 0 0 2 0 0 0 0 0 1 0
Nuclear Periphery 0 1 0 0 0 0 2 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
Nucleolus 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Peroxisomes 0 0 0 0 0 1 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
SpindlePole 0 0 0 0 1 2 4 7 2 7 4 3 0 0 0 1 2 2 1 0 0 1 3 6
Vac/Vac Membrane 2 1 0 3 1 4 2 2 3 8 3 5 0 1 3 6 8 6 11 7 2 3 7 13
Unique Cell Count 208 110 16 167 266 251 436 397 261 386 323 316 267 373 468 306 298 255 238 122 51 194 335 420
Labelled Cell Count 224 111 17 175 274 277 486 438 318 440 414 355 272 378 476 336 334 287 238 122 51 194 335 420


Cytoplasm

(Huh et al. Nature 2003 425:686)
Screen WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 AF100 AF140 AF180
Mean Cell GFP Intensity (1e-4) 3.5 4.4 3.9 4.6 5.0 4.3 3.9 4.2 3.8 3.8 3.5 3.7 5.2 5.2 5.1 5.9 6.6 6.6 4.5 5.0 5.1
Std Deviation (1e-4) 0.4 0.7 0.6 1.3 1.3 1.3 1.2 0.9 1.6 1.1 1.0 0.7 1.2 0.9 1.4 1.0 1.6 1.8 0.7 1.6 1.4
Intensity Change (Log2) 0.21 0.34 0.13 -0.01 0.08 -0.06 -0.05 -0.19 -0.1 0.39 0.4 0.38 0.59 0.73 0.74 0.18 0.33 0.38


Localization RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3
Actin
Bud
Bud Neck
Bud Site
Cell Periphery
Cyto
Endoplasmic Reticulum
Endosome
Golgi
Mitochondria
Nuclear Periphery
Nuc
Nucleolus
Peroxisomes
SpindlePole
Vac
Cortical Patches
Cytoplasm
Nucleus
Vacuole