Standard name | |
---|---|
Description | Endonuclease involved in pre-rRNA processing at both ends of ITS2; functions with Grc3p in a conserved mechanism to modulate rRNA processing and ribosome biogenesis; may coordinate the action of the Rat1p-Rai1p exoRNAse; required for the G1/S cell cycle transition; human ortholog is Las1L; mutants require the SSD1-v allele for viability |
ensLOC | DeepLoc | |||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Localization | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | WT1 | WT2 | WT3 | AF100 | AF140 | AF180 |
Cortical Patches | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud | 1 | 0 | 0 | 0 | 1 | 1 | 2 | 6 | 5 | 10 | 2 | 3 | 0 | 0 | 0 | 0 | 1 | 0 | 3 | 2 | 1 | 0 | 3 | 3 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 |
Bud Site | 0 | 0 | 0 | 0 | 1 | 0 | 5 | 6 | 8 | 13 | 9 | 14 | 0 | 0 | 0 | 0 | 0 | 0 | – | – | – | – | – | – |
Cell Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 2 | 4 | 8 | 11 | 14 | 21 | 56 | 36 | 27 | 33 | 22 | 37 | 23 | 60 | 63 | 31 | 15 | 8 | 0 | 1 | 0 | 0 | 2 | 1 |
Endoplasmic Reticulum | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 1 | 4 | 2 | 0 | 0 | 0 | 1 | 0 | 1 | 2 |
Endosome | 0 | 0 | 1 | 0 | 4 | 0 | 2 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 2 | 0 | 2 | 1 | 0 | 1 | 1 | 4 | 2 |
Golgi | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 1 | 1 | 0 | 0 | 0 | 2 | 0 | 1 | 0 |
Mitochondria | 54 | 26 | 55 | 60 | 56 | 183 | 320 | 293 | 233 | 342 | 256 | 375 | 4 | 20 | 19 | 30 | 6 | 9 | 2 | 4 | 0 | 0 | 2 | 6 |
Nucleus | 188 | 224 | 196 | 152 | 229 | 220 | 295 | 277 | 189 | 241 | 183 | 260 | 199 | 367 | 291 | 378 | 185 | 138 | 183 | 220 | 197 | 104 | 196 | 123 |
Nuclear Periphery | 1 | 1 | 0 | 2 | 2 | 1 | 9 | 1 | 2 | 7 | 3 | 4 | 0 | 1 | 3 | 1 | 4 | 0 | 0 | 0 | 1 | 0 | 0 | 1 |
Nucleolus | 0 | 1 | 0 | 0 | 1 | 2 | 4 | 1 | 2 | 4 | 2 | 0 | 0 | 4 | 4 | 4 | 0 | 1 | 1 | 0 | 1 | 1 | 5 | 7 |
Peroxisomes | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 1 | 1 | 3 | 1 | 0 | 0 | 1 | 1 | 1 | 0 | 1 | 2 | 0 | 0 | 1 | 3 | 4 |
Vac/Vac Membrane | 3 | 11 | 3 | 3 | 13 | 11 | 19 | 17 | 8 | 8 | 2 | 13 | 5 | 15 | 15 | 15 | 9 | 8 | 10 | 11 | 17 | 6 | 35 | 43 |
Unique Cell Count | 202 | 241 | 224 | 185 | 278 | 310 | 500 | 463 | 315 | 431 | 311 | 466 | 225 | 448 | 376 | 432 | 210 | 155 | 205 | 243 | 229 | 121 | 258 | 207 |
Labelled Cell Count | 249 | 267 | 263 | 229 | 323 | 439 | 714 | 640 | 475 | 661 | 482 | 707 | 232 | 469 | 399 | 467 | 224 | 167 | 205 | 243 | 229 | 121 | 258 | 207 |
Screen | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | AF100 | AF140 | AF180 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Mean Cell GFP Intensity (1e-4) | 4.4 | 4.9 | 4.5 | 3.9 | 4.4 | 3.6 | 3.1 | 3.3 | 3.2 | 2.9 | 3.0 | 2.9 | 5.6 | 5.2 | 5.1 | 6.0 | 7.3 | 7.9 | 5.1 | 5.0 | 6.0 |
Std Deviation (1e-4) | 0.6 | 0.9 | 1.5 | 1.0 | 1.4 | 0.9 | 0.9 | 0.9 | 0.9 | 0.8 | 0.7 | 0.7 | 1.2 | 1.3 | 1.2 | 1.3 | 1.6 | 1.8 | 1.2 | 1.1 | 2.1 |
Intensity Change (Log2) | – | – | – | -0.2 | -0.03 | -0.33 | -0.52 | -0.45 | -0.48 | -0.64 | -0.57 | -0.62 | 0.32 | 0.21 | 0.17 | 0.42 | 0.7 | 0.8 | 0.17 | 0.17 | 0.42 |
Localization | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Cortical Patches | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cell Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 1.1 | 0.8 | 1.6 | 3.3 | 2.1 | 2.3 | 2.0 | 1.7 | 2.2 | 2.8 | 4.0 | 4.8 | 1.9 | 1.7 | 0.8 |
Endoplasmic Reticulum | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Endosome | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Golgi | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Mitochondria | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | -7.1 | -7.8 | -7.0 | -6.4 | -6.5 | -4.8 |
Nucleus | -1.5 | -1.6 | -4.5 | -7.6 | -7.3 | -7.0 | -8.1 | -7.2 | -8.2 | 0.3 | -1.8 | -3.1 | 0 | 0.2 | 0.5 |
Nuclear Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleolus | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Peroxisomes | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Vacuole | 0 | 2.1 | 1.6 | 1.8 | 1.7 | 0 | 0 | 0 | 1.2 | 0 | 1.5 | 1.8 | 1.6 | 1.9 | 0 |
Temp | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Vph1-GFP) |
---|---|---|---|---|
37℃ | ||||
RT |
Gene / Allele | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Sac6-tdTomato) |
---|
Gene | Images |
---|
Gene | Images |
---|