Standard name | |
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Human Ortholog | |
Description | Nucleosome remodeling protein; functions in various aspects of transcription, chromatin maintenance, and RNA processing; required for the maintenance of chromatin structure during transcription in order to inhibit transcription from promoters within the coding region; required for H3K36 trimethylation but not dimethylation by Set2p |
ensLOC | DeepLoc | |||||||||||||||||||||||
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Localization | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | WT1 | WT2 | WT3 | AF100 | AF140 | AF180 |
Cortical Patches | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 8 | 0 | 0 | 0 | 4 | 0 | 0 | 0 | 2 | 2 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
Bud Site | 0 | 0 | 0 | 1 | 1 | 4 | 7 | 7 | 1 | 2 | 1 | 5 | 1 | 6 | 13 | 0 | 0 | 0 | – | – | – | – | – | – |
Cell Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 3 | 1 | 0 | 3 | 2 | 2 | 3 | 5 | 7 | 5 | 5 | 3 | 8 | 32 | 30 | 8 | 6 | 13 | 0 | 0 | 0 | 0 | 0 | 1 |
Endoplasmic Reticulum | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 3 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 |
Endosome | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 2 | 3 | 3 | 2 | 1 | 0 | 0 | 0 | 0 | 1 |
Golgi | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
Mitochondria | 4 | 2 | 2 | 5 | 5 | 10 | 28 | 8 | 17 | 26 | 9 | 12 | 2 | 1 | 8 | 6 | 7 | 13 | 1 | 0 | 0 | 0 | 0 | 5 |
Nucleus | 223 | 67 | 29 | 91 | 144 | 79 | 154 | 183 | 57 | 113 | 63 | 121 | 125 | 305 | 300 | 162 | 135 | 145 | 177 | 77 | 42 | 85 | 198 | 164 |
Nuclear Periphery | 0 | 0 | 0 | 0 | 1 | 2 | 5 | 1 | 2 | 3 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleolus | 161 | 67 | 20 | 39 | 76 | 35 | 116 | 124 | 51 | 81 | 60 | 109 | 97 | 153 | 171 | 92 | 59 | 76 | 91 | 15 | 22 | 38 | 80 | 147 |
Peroxisomes | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 6 | 1 | 1 | 2 | 0 | 0 | 0 | 0 | 0 | 1 |
SpindlePole | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 17 | 17 | 1 | 1 | 0 | 1 | 0 | 0 | 0 | 3 | 4 |
Vac/Vac Membrane | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 3 | 6 | 4 | 5 | 3 | 3 | 3 | 1 | 2 | 23 | 16 |
Unique Cell Count | 275 | 81 | 38 | 108 | 174 | 106 | 223 | 248 | 104 | 176 | 106 | 181 | 152 | 385 | 405 | 216 | 173 | 200 | 285 | 99 | 69 | 129 | 311 | 350 |
Labelled Cell Count | 392 | 138 | 52 | 139 | 229 | 133 | 314 | 328 | 136 | 231 | 142 | 250 | 235 | 521 | 564 | 281 | 218 | 256 | 285 | 99 | 69 | 129 | 311 | 350 |
Screen | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | AF100 | AF140 | AF180 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Mean Cell GFP Intensity (1e-4) | 23.7 | 16.9 | 13.0 | 12.3 | 11.5 | 11.7 | 10.2 | 10.2 | 10.4 | 10.0 | 9.8 | 9.1 | 19.1 | 18.7 | 15.4 | 21.2 | 23.0 | 25.6 | 19.6 | 19.4 | 21.5 |
Std Deviation (1e-4) | 7.4 | 5.0 | 3.6 | 3.4 | 2.8 | 3.1 | 2.7 | 2.9 | 4.0 | 3.1 | 4.7 | 2.9 | 6.8 | 7.5 | 6.3 | 7.6 | 8.4 | 9.3 | 5.6 | 6.6 | 5.9 |
Intensity Change (Log2) | – | – | – | -0.08 | -0.18 | -0.15 | -0.35 | -0.36 | -0.33 | -0.38 | -0.4 | -0.52 | 0.56 | 0.52 | 0.24 | 0.7 | 0.82 | 0.97 | 0.59 | 0.58 | 0.72 |
Localization | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Cortical Patches | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cell Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Endoplasmic Reticulum | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Endosome | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Golgi | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Mitochondria | 0 | 0 | 0 | 0 | 0 | 1.7 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleus | 1.1 | 0.9 | -0.2 | -0.9 | -0.3 | -2.3 | -1.4 | -1.9 | -1.1 | 0.8 | 0.4 | -0.3 | -0.2 | 0.2 | -0.5 |
Nuclear Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleolus | -1.8 | -1.0 | -2.1 | -0.1 | -0.3 | -0.4 | -0.7 | 0.4 | 0.9 | 1.3 | -1.5 | -1.2 | -1.1 | -2.1 | -1.7 |
Peroxisomes | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Vacuole | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
R1 | R2 | R3 | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Concentration | 11.1938 | 13.9172 | 14.3029 | 13.0493 | 12.191 | 12.6741 | 20.8784 | 21.8336 | 19.0115 | 17.5458 | 19.4047 | 19.2989 | 13.4348 | 15.5206 | 13.9032 | 15.8125 | 10.5077 | 13.9661 |
Actin | 0.0462 | 0 | 0.0299 | 0 | 0.1129 | 0.0219 | 0.0106 | 0 | 0.0078 | 0 | 0.0079 | 0.0002 | 0.0948 | 0.0002 | 0.0107 | 0 | 0.0312 | 0.0028 |
Bud | 0.0007 | 0 | 0.0001 | 0 | 0.0023 | 0.0003 | 0.0002 | 0 | 0.0005 | 0.0001 | 0.0003 | 0.0001 | 0.0002 | 0.0013 | 0.0005 | 0 | 0.0005 | 0 |
Bud Neck | 0.001 | 0 | 0.0002 | 0 | 0.0045 | 0.0009 | 0.0001 | 0 | 0.0001 | 0 | 0.0001 | 0.0002 | 0.002 | 0.0001 | 0.0001 | 0 | 0.0113 | 0.0002 |
Bud Periphery | 0.0009 | 0 | 0.0001 | 0 | 0.003 | 0.0003 | 0.0003 | 0 | 0.0007 | 0.0004 | 0.0006 | 0.0001 | 0.0002 | 0.0027 | 0.0008 | 0 | 0.0009 | 0.0001 |
Bud Site | 0.0044 | 0.0001 | 0.0002 | 0 | 0.01 | 0.0017 | 0.0002 | 0.0001 | 0.0012 | 0.0001 | 0.0003 | 0.0001 | 0.0031 | 0.0032 | 0.0032 | 0 | 0.003 | 0.0001 |
Cell Periphery | 0.0004 | 0 | 0 | 0 | 0.0005 | 0.0002 | 0.0001 | 0.0001 | 0.0001 | 0.0006 | 0.0008 | 0.0001 | 0.0002 | 0.0005 | 0.0004 | 0 | 0.0011 | 0 |
Cytoplasm | 0.0221 | 0 | 0.0003 | 0 | 0.0015 | 0.0018 | 0.0051 | 0 | 0.0004 | 0.0001 | 0 | 0.0001 | 0.0042 | 0.0003 | 0.0019 | 0 | 0.0023 | 0.0003 |
Cytoplasmic Foci | 0.0194 | 0 | 0.0044 | 0 | 0.0268 | 0.0108 | 0.0027 | 0.0005 | 0.0004 | 0.0002 | 0.0011 | 0 | 0.01 | 0 | 0.0024 | 0 | 0.0159 | 0.0011 |
Eisosomes | 0.0004 | 0 | 0.0001 | 0 | 0.0005 | 0.0003 | 0.0001 | 0.0001 | 0.0001 | 0 | 0.0002 | 0 | 0.0005 | 0 | 0.0004 | 0 | 0.0004 | 0 |
Endoplasmic Reticulum | 0.0125 | 0 | 0.0022 | 0 | 0.0036 | 0.0009 | 0.001 | 0 | 0.0005 | 0 | 0.0001 | 0 | 0.0013 | 0.0001 | 0.0013 | 0 | 0.0051 | 0.0003 |
Endosome | 0.0382 | 0 | 0.0056 | 0 | 0.0299 | 0.0063 | 0.0045 | 0 | 0.0026 | 0.0001 | 0.0031 | 0.0002 | 0.0032 | 0.0005 | 0.0036 | 0 | 0.0188 | 0.0036 |
Golgi | 0.0083 | 0 | 0.0065 | 0 | 0.0194 | 0.0145 | 0.0014 | 0 | 0.0006 | 0 | 0.0092 | 0 | 0.0026 | 0 | 0.0028 | 0 | 0.0083 | 0.0006 |
Lipid Particles | 0.0103 | 0 | 0.0013 | 0 | 0.0133 | 0.0061 | 0.001 | 0.0002 | 0.0003 | 0.0005 | 0.0194 | 0 | 0.0058 | 0.0001 | 0.0065 | 0 | 0.0242 | 0.001 |
Mitochondria | 0.021 | 0.0016 | 0.0016 | 0.0011 | 0.0614 | 0.0151 | 0.0044 | 0.0035 | 0.0038 | 0.0044 | 0.0714 | 0.0009 | 0.0006 | 0.0021 | 0.0068 | 0.0003 | 0.0161 | 0.0006 |
None | 0.0066 | 0 | 0.0003 | 0 | 0.0015 | 0.0054 | 0.0047 | 0.0002 | 0.0003 | 0.0002 | 0.0002 | 0.0001 | 0.0032 | 0.0002 | 0.0053 | 0 | 0.0035 | 0.0003 |
Nuclear Periphery | 0.0353 | 0.0002 | 0.0022 | 0.0001 | 0.0038 | 0.0015 | 0.0193 | 0.0003 | 0.0086 | 0.0016 | 0.0017 | 0.0031 | 0.0044 | 0.0019 | 0.0005 | 0.0003 | 0.0041 | 0.0036 |
Nucleolus | 0.215 | 0.1309 | 0.1049 | 0.0719 | 0.408 | 0.303 | 0.1378 | 0.0891 | 0.0781 | 0.1263 | 0.5508 | 0.2935 | 0.1252 | 0.0391 | 0.0691 | 0.1056 | 0.4918 | 0.3115 |
Nucleus | 0.5245 | 0.8664 | 0.8355 | 0.9264 | 0.2491 | 0.5898 | 0.7912 | 0.9052 | 0.8867 | 0.788 | 0.3232 | 0.6987 | 0.6978 | 0.9389 | 0.8801 | 0.8934 | 0.3406 | 0.668 |
Peroxisomes | 0.0045 | 0 | 0.004 | 0 | 0.0416 | 0.002 | 0.0004 | 0.0001 | 0.0003 | 0.0001 | 0.0045 | 0 | 0.008 | 0.0001 | 0.0016 | 0 | 0.0079 | 0.0004 |
Punctate Nuclear | 0.0234 | 0.0001 | 0.0003 | 0.0001 | 0.0018 | 0.0149 | 0.0137 | 0 | 0.0044 | 0.0662 | 0.0007 | 0.0023 | 0.0318 | 0.0001 | 0.0004 | 0.0001 | 0.0109 | 0.0052 |
Vacuole | 0.0023 | 0.0001 | 0.0001 | 0.0001 | 0.002 | 0.0007 | 0.0004 | 0.0001 | 0.0011 | 0.0029 | 0.0014 | 0.0002 | 0.0008 | 0.0057 | 0.0009 | 0 | 0.0013 | 0.0001 |
Vacuole Periphery | 0.0024 | 0.0004 | 0.0002 | 0.0001 | 0.0025 | 0.0016 | 0.0011 | 0.0003 | 0.0014 | 0.0079 | 0.0029 | 0.0002 | 0.0002 | 0.003 | 0.0007 | 0.0001 | 0.0008 | 0.0002 |
R1 | R2 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Gene Expression | 102.8426 | 102.3512 | 92.0798 | 100.4852 | 94.7501 | 89.1146 | 84.5413 | 89.3948 | 89.9389 | 95.0235 |
Translational Efficiency | 1.2865 | 1.2525 | 1.1789 | 1.2178 | 1.0611 | 1.1494 | 1.0959 | 0.9043 | 0.891 | 0.9978 |
Dataset | Hit |
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Protein Concentration | ✘ |
Protein Localization | ✘ |
Gene Expression | ✘ |
Translational Efficiency | ✘ |
Temp | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Vph1-GFP) |
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37℃ | ||||
RT |
Gene / Allele | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Sac6-tdTomato) |
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Gene | Images |
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Gene | Images |
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