Standard name | |
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Human Ortholog | |
Description | Small subunit of the clathrin-associated adaptor complex AP-3; involved in vacuolar protein sorting; related to the sigma subunit of the mammalian clathrin AP-3 complex; suppressor of loss of casein kinase 1 function; protein abundance increases in response to DNA replication stress |
ensLOC | DeepLoc | |||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Localization | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | WT1 | WT2 | WT3 | AF100 | AF140 | AF180 |
Cortical Patches | 49 | 37 | 43 | 12 | 16 | 39 | 22 | 17 | 22 | 23 | 19 | 38 | 41 | 25 | 21 | 62 | 35 | 49 | 16 | 9 | 21 | 8 | 16 | 22 |
Bud | 4 | 1 | 16 | 11 | 24 | 33 | 42 | 47 | 29 | 37 | 28 | 48 | 6 | 4 | 3 | 9 | 4 | 8 | 1 | 0 | 0 | 0 | 0 | 1 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 4 | 8 | 6 | 8 | 10 | 8 | 14 | 0 | 0 | 0 | 0 | 0 | 0 | – | – | – | – | – | – |
Cell Periphery | 2 | 2 | 3 | 1 | 2 | 2 | 1 | 2 | 4 | 2 | 4 | 5 | 1 | 1 | 1 | 5 | 2 | 3 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 24 | 20 | 8 | 11 | 18 | 31 | 30 | 28 | 25 | 27 | 26 | 34 | 15 | 16 | 50 | 28 | 33 | 23 | 4 | 1 | 1 | 4 | 4 | 4 |
Endoplasmic Reticulum | 21 | 31 | 19 | 3 | 19 | 31 | 16 | 19 | 18 | 23 | 24 | 34 | 23 | 12 | 17 | 17 | 13 | 9 | 3 | 3 | 3 | 7 | 8 | 11 |
Endosome | 20 | 9 | 54 | 43 | 57 | 31 | 42 | 37 | 36 | 58 | 29 | 28 | 38 | 32 | 39 | 73 | 59 | 59 | 66 | 42 | 70 | 56 | 61 | 53 |
Golgi | 140 | 113 | 105 | 108 | 51 | 23 | 15 | 19 | 23 | 12 | 7 | 4 | 113 | 119 | 81 | 152 | 105 | 107 | 142 | 123 | 176 | 105 | 100 | 135 |
Mitochondria | 49 | 34 | 130 | 233 | 290 | 393 | 457 | 491 | 391 | 408 | 406 | 419 | 17 | 4 | 0 | 34 | 32 | 21 | 5 | 5 | 7 | 13 | 13 | 11 |
Nucleus | 0 | 0 | 0 | 0 | 1 | 2 | 1 | 4 | 0 | 2 | 1 | 1 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 1 | 0 | 0 |
Nuclear Periphery | 1 | 1 | 2 | 1 | 2 | 1 | 3 | 4 | 7 | 5 | 6 | 1 | 3 | 0 | 1 | 0 | 3 | 1 | 2 | 0 | 1 | 1 | 1 | 1 |
Nucleolus | 1 | 2 | 6 | 6 | 4 | 10 | 14 | 55 | 16 | 9 | 15 | 12 | 2 | 0 | 1 | 3 | 4 | 2 | 0 | 0 | 0 | 0 | 0 | 0 |
Peroxisomes | 0 | 0 | 1 | 5 | 6 | 3 | 9 | 14 | 6 | 9 | 3 | 9 | 1 | 1 | 0 | 0 | 1 | 0 | 2 | 0 | 5 | 4 | 6 | 4 |
SpindlePole | 1 | 0 | 1 | 2 | 3 | 7 | 15 | 14 | 4 | 26 | 12 | 16 | 4 | 3 | 5 | 10 | 12 | 15 | 1 | 2 | 2 | 3 | 0 | 1 |
Vac/Vac Membrane | 27 | 10 | 8 | 8 | 12 | 8 | 16 | 16 | 11 | 13 | 4 | 6 | 16 | 22 | 20 | 28 | 39 | 32 | 9 | 4 | 2 | 7 | 8 | 10 |
Unique Cell Count | 225 | 172 | 259 | 320 | 389 | 483 | 560 | 620 | 482 | 531 | 481 | 526 | 209 | 201 | 201 | 301 | 253 | 245 | 259 | 196 | 293 | 219 | 225 | 259 |
Labelled Cell Count | 339 | 260 | 396 | 444 | 505 | 618 | 691 | 773 | 600 | 664 | 592 | 669 | 280 | 239 | 239 | 421 | 343 | 330 | 259 | 196 | 293 | 219 | 225 | 259 |
Screen | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | AF100 | AF140 | AF180 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Mean Cell GFP Intensity (1e-4) | 11.8 | 11.5 | 8.4 | 8.4 | 7.3 | 6.9 | 6.3 | 6.4 | 6.6 | 5.9 | 6.3 | 6.3 | 11.2 | 11.2 | 11.1 | 11.4 | 10.8 | 10.9 | 12.4 | 11.9 | 12.7 |
Std Deviation (1e-4) | 1.6 | 1.7 | 1.1 | 1.3 | 1.1 | 1.3 | 1.6 | 1.4 | 1.3 | 1.3 | 1.4 | 1.3 | 1.7 | 1.4 | 1.4 | 2.0 | 1.9 | 1.9 | 2.4 | 2.1 | 2.0 |
Intensity Change (Log2) | – | – | – | -0.01 | -0.19 | -0.28 | -0.41 | -0.39 | -0.36 | -0.51 | -0.42 | -0.41 | 0.42 | 0.41 | 0.41 | 0.44 | 0.36 | 0.38 | 0.56 | 0.5 | 0.59 |
Localization | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Cortical Patches | -5.2 | -5.4 | -3.5 | -6.2 | -7.4 | -5.5 | -5.9 | -5.9 | -4.1 | 0.8 | -1.2 | -1.9 | 1.2 | -0.9 | 1.0 |
Bud | -1.6 | 0 | 0.3 | 0.7 | 0.7 | -0.1 | 0.4 | -0.2 | 1.4 | -1.7 | -2.2 | -2.5 | -1.8 | -2.7 | -1.5 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cell Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 0.2 | 1.0 | 1.9 | 1.4 | 1.0 | 1.3 | 1.3 | 1.4 | 2.0 | 2.0 | 2.3 | 7.0 | 3.0 | 4.1 | 2.9 |
Endoplasmic Reticulum | -4.0 | -1.3 | -0.5 | -2.9 | -2.8 | -2.1 | -1.8 | -1.3 | -0.5 | 1.4 | -0.6 | 0.4 | -0.8 | -1.0 | -1.8 |
Endosome | -2.4 | -2.1 | -5.9 | -5.5 | -6.6 | -5.3 | -3.8 | -6.1 | -6.7 | -0.7 | -1.3 | -0.4 | 1.0 | 0.7 | 0.9 |
Golgi | -1.7 | -8.0 | -12.3 | -14.2 | -14.6 | -12.3 | -14.2 | -14.2 | -15.2 | 2.9 | 4.0 | -0.1 | 2.4 | 0.2 | 0.7 |
Mitochondria | 5.6 | 6.4 | 8.9 | 9.3 | 8.6 | 8.8 | 7.5 | 9.9 | 8.5 | -9.7 | -11.3 | -11.9 | -10.1 | -9.1 | -10.2 |
Nucleus | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nuclear Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleolus | -0.4 | 0 | -0.2 | 0.2 | 3.5 | 0.8 | 0 | 0.6 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Peroxisomes | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 0 | 0 | 0 | 2.2 | 0 | 0 | 3.3 | 0 | 2.4 | 0 | 0 | 0 | 2.5 | 3.1 | 3.7 |
Vacuole | -0.4 | 0 | -1.3 | -0.2 | -0.4 | -0.7 | -0.5 | 0 | 0 | 2.2 | 3.4 | 3.1 | 3.0 | 4.8 | 4.1 |
R1 | R2 | R3 | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Concentration | 5.0358 | 5.9584 | 5.7141 | 4.8492 | 4.5652 | 5.3261 | 6.8494 | 8.4888 | 7.7341 | 10.7472 | 6.8988 | 7.6408 | 3.8976 | 5.8175 | 5.127 | 5.0597 | 4.2092 | 4.9737 |
Actin | 0.0129 | 0.0236 | 0.0179 | 0.0848 | 0.0101 | 0.0231 | 0.0646 | 0.0244 | 0.0265 | 0.0283 | 0.0251 | 0.0138 | 0.0303 | 0.0113 | 0.0331 | 0.0044 | 0.0302 | 0.0172 |
Bud | 0.0004 | 0.0006 | 0.0004 | 0.0005 | 0.0003 | 0.0002 | 0.0007 | 0.0026 | 0.0004 | 0.0002 | 0.0002 | 0.0002 | 0.0007 | 0.0003 | 0.0005 | 0.0002 | 0.0009 | 0.0002 |
Bud Neck | 0.0011 | 0.0006 | 0.0037 | 0.0006 | 0.0004 | 0.0011 | 0.0044 | 0.0007 | 0.0006 | 0.0025 | 0.0004 | 0.0012 | 0.0009 | 0.0002 | 0.001 | 0.0005 | 0.0004 | 0.0007 |
Bud Periphery | 0.0003 | 0.0003 | 0.0003 | 0.0004 | 0.0003 | 0.0002 | 0.0006 | 0.0018 | 0.0002 | 0.0001 | 0.0001 | 0.0001 | 0.0007 | 0.0002 | 0.0002 | 0.0001 | 0.0015 | 0.0001 |
Bud Site | 0.0013 | 0.0031 | 0.0046 | 0.0007 | 0.0004 | 0.0003 | 0.0028 | 0.0091 | 0.0018 | 0.0005 | 0.0003 | 0.0007 | 0.0015 | 0.0006 | 0.0027 | 0.0003 | 0.002 | 0.0003 |
Cell Periphery | 0.0001 | 0.0001 | 0.0001 | 0 | 0.0001 | 0.0001 | 0.0006 | 0.0001 | 0.0006 | 0.0022 | 0 | 0 | 0.0001 | 0 | 0 | 0 | 0.0002 | 0.0001 |
Cytoplasm | 0.0138 | 0.031 | 0.0123 | 0.0075 | 0.0047 | 0.0095 | 0.0194 | 0.0308 | 0.0152 | 0.0063 | 0.006 | 0.0082 | 0.0064 | 0.0148 | 0.0066 | 0.0071 | 0.0491 | 0.0217 |
Cytoplasmic Foci | 0.155 | 0.1926 | 0.1526 | 0.129 | 0.151 | 0.1517 | 0.1827 | 0.1796 | 0.1743 | 0.1102 | 0.1538 | 0.1523 | 0.164 | 0.1519 | 0.1536 | 0.1281 | 0.0953 | 0.125 |
Eisosomes | 0.0001 | 0.0001 | 0.0001 | 0.0001 | 0 | 0 | 0.0004 | 0 | 0.0001 | 0 | 0 | 0 | 0.0001 | 0 | 0 | 0 | 0.0004 | 0 |
Endoplasmic Reticulum | 0.0035 | 0.0016 | 0.0025 | 0.0007 | 0.0025 | 0.0012 | 0.0043 | 0.0009 | 0.0015 | 0.0006 | 0.0015 | 0.0007 | 0.0024 | 0.003 | 0.0015 | 0.0015 | 0.0056 | 0.0023 |
Endosome | 0.4049 | 0.351 | 0.3764 | 0.3562 | 0.4041 | 0.3174 | 0.3486 | 0.3425 | 0.3367 | 0.2359 | 0.333 | 0.2472 | 0.3719 | 0.439 | 0.3722 | 0.548 | 0.4216 | 0.3513 |
Golgi | 0.2959 | 0.3676 | 0.3727 | 0.3926 | 0.3959 | 0.4568 | 0.2978 | 0.3849 | 0.3868 | 0.443 | 0.4459 | 0.551 | 0.3573 | 0.3558 | 0.4023 | 0.2878 | 0.1697 | 0.4529 |
Lipid Particles | 0.0069 | 0.0026 | 0.0126 | 0.0014 | 0.0041 | 0.0023 | 0.0108 | 0.0014 | 0.0054 | 0.004 | 0.0092 | 0.0035 | 0.0126 | 0.002 | 0.0031 | 0.0013 | 0.0601 | 0.003 |
Mitochondria | 0.0086 | 0.0054 | 0.0068 | 0.005 | 0.0096 | 0.0207 | 0.0063 | 0.0051 | 0.0107 | 0.0037 | 0.0061 | 0.0052 | 0.0216 | 0.0105 | 0.0071 | 0.0024 | 0.0241 | 0.0082 |
None | 0.0059 | 0.0003 | 0.0008 | 0.0001 | 0.0003 | 0.0001 | 0.0035 | 0.0003 | 0.0018 | 0.0001 | 0.0002 | 0.0001 | 0.0024 | 0.0001 | 0.0001 | 0.0001 | 0.0013 | 0.0001 |
Nuclear Periphery | 0.0328 | 0.0009 | 0.0068 | 0.0002 | 0.0049 | 0.0002 | 0.0103 | 0.0001 | 0.0009 | 0.0002 | 0.0005 | 0.0001 | 0.0017 | 0.0004 | 0.0002 | 0.0003 | 0.0534 | 0.0002 |
Nucleolus | 0.001 | 0.0001 | 0.0001 | 0 | 0.0001 | 0 | 0.0005 | 0 | 0.0004 | 0.0002 | 0 | 0.0001 | 0.0001 | 0 | 0 | 0 | 0.0006 | 0 |
Nucleus | 0.0206 | 0.0009 | 0.0015 | 0.0001 | 0.0007 | 0.0001 | 0.0025 | 0.0001 | 0.0005 | 0.0002 | 0.0001 | 0.0001 | 0.0003 | 0.0001 | 0.0001 | 0 | 0.006 | 0.0001 |
Peroxisomes | 0.0193 | 0.0132 | 0.0231 | 0.0167 | 0.0038 | 0.0098 | 0.0266 | 0.008 | 0.0162 | 0.0299 | 0.0149 | 0.0136 | 0.0207 | 0.0057 | 0.0131 | 0.0087 | 0.0605 | 0.0119 |
Punctate Nuclear | 0.01 | 0.0003 | 0.0015 | 0.0001 | 0.0006 | 0.0001 | 0.0016 | 0.0002 | 0.0017 | 0.0003 | 0.0008 | 0.0002 | 0.001 | 0.0001 | 0.0002 | 0.0001 | 0.0021 | 0.0001 |
Vacuole | 0.003 | 0.0025 | 0.0015 | 0.0017 | 0.0034 | 0.0026 | 0.0076 | 0.0058 | 0.0141 | 0.0944 | 0.0007 | 0.0007 | 0.0016 | 0.0021 | 0.0011 | 0.0041 | 0.006 | 0.0023 |
Vacuole Periphery | 0.0025 | 0.0016 | 0.0017 | 0.0018 | 0.0027 | 0.0023 | 0.0034 | 0.0015 | 0.0038 | 0.0373 | 0.001 | 0.0009 | 0.0018 | 0.0019 | 0.0013 | 0.0049 | 0.009 | 0.0024 |
R1 | R2 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Gene Expression | 20.7478 | 11.8028 | 21.2699 | 21.0971 | 17.1184 | 13.1958 | 20.0317 | 18.4103 | 15.316 | 24.6683 |
Translational Efficiency | 2.0488 | 3.2217 | 1.4257 | 1.0707 | 1.9915 | 2.9666 | 1.933 | 2.0423 | 2.232 | 1.3866 |
Dataset | Hit |
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Protein Concentration | ✘ |
Protein Localization | ✘ |
Gene Expression | ✘ |
Translational Efficiency | ✘ |
Temp | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Vph1-GFP) |
---|---|---|---|---|
37℃ | ||||
RT |
Gene / Allele | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Sac6-tdTomato) |
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Gene | Images |
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Gene | Images |
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