Standard name | |
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Human Ortholog | |
Description | Twin Cx(9)C protein involved in cytochrome c oxidase organization; organization includes assembly or stability; localizes to the mitochondrial intermembrane space via the Mia40p-Erv1p system; interacts genetically with CYC1 and with cytochrome c oxidase assembly factors |
ensLOC | DeepLoc | |||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Localization | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | WT1 | WT2 | WT3 | AF100 | AF140 | AF180 |
Cortical Patches | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
Bud | 1 | 0 | 0 | 2 | 1 | 0 | – | 1 | 2 | 3 | 1 | 7 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 4 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | – | – | – | – | – |
Cell Periphery | 3 | 2 | 0 | 0 | 2 | 0 | – | 2 | 2 | 9 | 0 | 8 | 1 | 1 | 1 | 3 | 3 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 370 | 144 | 109 | 154 | 207 | 203 | – | 174 | 156 | 237 | 154 | 232 | 208 | 326 | 423 | 165 | 119 | 166 | 372 | 137 | 104 | 98 | 189 | 203 |
Endoplasmic Reticulum | 2 | 1 | 0 | 0 | 0 | 1 | – | 1 | 2 | 3 | 0 | 2 | 0 | 0 | 1 | 5 | 4 | 2 | 0 | 1 | 0 | 0 | 0 | 2 |
Endosome | 1 | 0 | 0 | 0 | 3 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 2 | 1 | 2 | 0 | 0 | 1 | 0 | 4 |
Golgi | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 |
Mitochondria | 2 | 0 | 7 | 21 | 13 | 40 | – | 43 | 84 | 119 | 81 | 136 | 0 | 2 | 3 | 0 | 2 | 4 | 0 | 2 | 1 | 0 | 1 | 2 |
Nucleus | 2 | 0 | 1 | 0 | 1 | 2 | – | 2 | 9 | 13 | 6 | 10 | 6 | 2 | 6 | 2 | 0 | 1 | 1 | 0 | 0 | 0 | 1 | 0 |
Nuclear Periphery | 0 | 0 | 0 | 0 | 0 | 0 | – | 2 | 2 | 1 | 1 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleolus | 0 | 0 | 0 | 0 | 1 | 0 | – | 0 | 0 | 1 | 1 | 1 | 0 | 0 | 0 | 1 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Peroxisomes | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 0 | 1 |
Vac/Vac Membrane | 1 | 2 | 0 | 4 | 14 | 9 | – | 42 | 29 | 61 | 21 | 34 | 4 | 1 | 5 | 18 | 16 | 14 | 3 | 0 | 1 | 3 | 5 | 3 |
Unique Cell Count | 377 | 148 | 112 | 156 | 229 | 235 | 240 | 235 | 371 | 225 | 353 | 213 | 332 | 433 | 176 | 131 | 175 | 387 | 146 | 110 | 108 | 204 | 231 | |
Labelled Cell Count | 382 | 149 | 117 | 181 | 242 | 255 | 267 | 286 | 447 | 265 | 433 | 219 | 334 | 441 | 195 | 148 | 189 | 387 | 146 | 110 | 108 | 204 | 231 |
Screen | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | AF100 | AF140 | AF180 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Mean Cell GFP Intensity (1e-4) | 5.7 | 8.1 | 4.1 | 4.9 | 6.9 | 6.3 | – | 6.9 | 5.9 | 6.3 | 6.1 | 6.0 | 7.1 | 7.3 | 7.6 | 15.8 | 15.0 | 15.1 | 5.8 | 7.0 | 7.1 |
Std Deviation (1e-4) | 0.8 | 1.3 | 1.1 | 1.2 | 1.5 | 1.2 | – | 1.8 | 1.4 | 1.2 | 1.6 | 1.3 | 5.7 | 1.2 | 1.4 | 3.6 | 3.2 | 3.2 | 1.2 | 1.4 | 1.4 |
Intensity Change (Log2) | – | – | – | 0.26 | 0.75 | 0.6 | – | 0.74 | 0.52 | 0.61 | 0.57 | 0.53 | 0.78 | 0.82 | 0.88 | 1.94 | 1.86 | 1.87 | 0.5 | 0.76 | 0.78 |
Localization | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Cortical Patches | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Neck | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cell Periphery | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 0.8 | -2.3 | -3.2 | – | -5.5 | -6.3 | -6.9 | -6.0 | -6.6 | 0.2 | 0.6 | 0.2 | -1.4 | -2.1 | -1.0 |
Endoplasmic Reticulum | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Endosome | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Golgi | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Mitochondria | 1.9 | -0.2 | 2.7 | – | 2.9 | 5.8 | 5.5 | 5.9 | 6.4 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleus | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nuclear Periphery | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleolus | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Peroxisomes | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Vacuole | 0 | 0 | 0 | – | 4.7 | 3.9 | 4.6 | 3.3 | 3.4 | 0 | 0 | 0 | 3.5 | 3.8 | 3.1 |
R1 | R2 | R3 | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Concentration | 2.5173 | 3.4647 | 3.0159 | 2.7576 | 2.6148 | 2.862 | 1.6179 | 2.4462 | 2.1616 | 1.6162 | 1.5188 | 1.7998 | 3.5844 | 4.7684 | 4.1447 | 3.9528 | 4.1027 | 3.8746 |
Actin | 0.0027 | 0.0003 | 0.0212 | 0.0006 | 0.0002 | 0.0078 | 0.0226 | 0.0012 | 0.0056 | 0.0089 | 0.0001 | 0.0006 | 0.0232 | 0.0003 | 0.0127 | 0.0151 | 0.0918 | 0.0021 |
Bud | 0.0002 | 0.0001 | 0.0004 | 0.0002 | 0.0002 | 0.0007 | 0.0006 | 0.0007 | 0.0071 | 0.0003 | 0.0002 | 0.0003 | 0.0003 | 0.0001 | 0.0002 | 0.0005 | 0.0002 | 0.0002 |
Bud Neck | 0.0003 | 0.0001 | 0.0011 | 0.0002 | 0.0003 | 0.0019 | 0.001 | 0.0002 | 0.0005 | 0.0005 | 0.0002 | 0.001 | 0.0018 | 0.0001 | 0.0007 | 0.0005 | 0.0005 | 0.0008 |
Bud Periphery | 0.0001 | 0 | 0.0002 | 0.0001 | 0 | 0.0017 | 0.0005 | 0.0002 | 0.0029 | 0.0002 | 0.0001 | 0.0001 | 0.0003 | 0 | 0.0002 | 0.0003 | 0.0002 | 0.0004 |
Bud Site | 0.0011 | 0.0003 | 0.0029 | 0.0001 | 0 | 0.0008 | 0.0037 | 0.0053 | 0.0024 | 0.0006 | 0 | 0.0002 | 0.0016 | 0.0002 | 0.003 | 0.0005 | 0.0004 | 0.0003 |
Cell Periphery | 0.0001 | 0.0001 | 0.0001 | 0 | 0 | 0.0002 | 0.0001 | 0.0001 | 0.0001 | 0.0001 | 0 | 0 | 0.0001 | 0 | 0.0001 | 0 | 0 | 0 |
Cytoplasm | 0.787 | 0.9228 | 0.7938 | 0.8829 | 0.9012 | 0.8742 | 0.7314 | 0.8718 | 0.8096 | 0.8762 | 0.9562 | 0.9188 | 0.7722 | 0.9404 | 0.8335 | 0.8549 | 0.8177 | 0.9206 |
Cytoplasmic Foci | 0.0163 | 0.0035 | 0.0252 | 0.0041 | 0.0025 | 0.0119 | 0.0448 | 0.0037 | 0.0159 | 0.0107 | 0.0052 | 0.0124 | 0.0314 | 0.0016 | 0.0077 | 0.0071 | 0.0115 | 0.008 |
Eisosomes | 0.0001 | 0 | 0.0001 | 0 | 0 | 0.0001 | 0.0002 | 0.0001 | 0.0001 | 0.0001 | 0 | 0 | 0.0001 | 0 | 0.0002 | 0.0001 | 0.0002 | 0 |
Endoplasmic Reticulum | 0.006 | 0.0031 | 0.0049 | 0.0032 | 0.0017 | 0.002 | 0.0071 | 0.0017 | 0.004 | 0.0032 | 0.001 | 0.0027 | 0.0041 | 0.0013 | 0.002 | 0.003 | 0.0005 | 0.0015 |
Endosome | 0.0197 | 0.0017 | 0.0166 | 0.0018 | 0.0011 | 0.0189 | 0.0282 | 0.0012 | 0.0074 | 0.0101 | 0.0032 | 0.0043 | 0.022 | 0.0004 | 0.0023 | 0.0029 | 0.0025 | 0.0086 |
Golgi | 0.008 | 0.0002 | 0.0073 | 0.0001 | 0 | 0.0123 | 0.0119 | 0.0002 | 0.0044 | 0.0158 | 0.0001 | 0.0001 | 0.0033 | 0 | 0.0013 | 0.002 | 0.007 | 0.0021 |
Lipid Particles | 0.0047 | 0.0002 | 0.0065 | 0.0001 | 0 | 0.0071 | 0.019 | 0.0001 | 0.0016 | 0.0076 | 0 | 0.0001 | 0.0111 | 0 | 0.0031 | 0.0049 | 0.0146 | 0.0047 |
Mitochondria | 0.0082 | 0.0001 | 0.0016 | 0.0003 | 0.0001 | 0.0138 | 0.009 | 0.0001 | 0.0047 | 0.0357 | 0.0001 | 0.0002 | 0.0013 | 0.0001 | 0.0007 | 0.0011 | 0.0008 | 0.0015 |
None | 0.1168 | 0.0625 | 0.0919 | 0.0947 | 0.0856 | 0.025 | 0.0923 | 0.1093 | 0.115 | 0.0136 | 0.0285 | 0.0502 | 0.0857 | 0.0521 | 0.1183 | 0.0869 | 0.0063 | 0.0255 |
Nuclear Periphery | 0.0055 | 0.0008 | 0.0032 | 0.0025 | 0.0013 | 0.0025 | 0.0038 | 0.0007 | 0.0024 | 0.0013 | 0.0005 | 0.0011 | 0.0032 | 0.0005 | 0.0011 | 0.0019 | 0.0006 | 0.0021 |
Nucleolus | 0.0004 | 0 | 0.0001 | 0 | 0 | 0.0005 | 0.0005 | 0 | 0.0004 | 0.0001 | 0 | 0 | 0.0012 | 0 | 0.0002 | 0.0001 | 0 | 0.0003 |
Nucleus | 0.0102 | 0.0034 | 0.0032 | 0.007 | 0.0045 | 0.0022 | 0.0068 | 0.0022 | 0.0062 | 0.0032 | 0.0021 | 0.0053 | 0.0078 | 0.0023 | 0.0033 | 0.0061 | 0.0042 | 0.0089 |
Peroxisomes | 0.0048 | 0 | 0.0168 | 0.0001 | 0 | 0.0035 | 0.01 | 0.0001 | 0.0014 | 0.0098 | 0 | 0.0001 | 0.0127 | 0 | 0.0064 | 0.0092 | 0.0383 | 0.0013 |
Punctate Nuclear | 0.0058 | 0.0003 | 0.0016 | 0.0012 | 0.0003 | 0.0084 | 0.0037 | 0.0008 | 0.007 | 0.0006 | 0.0003 | 0.0014 | 0.0129 | 0.0002 | 0.0026 | 0.0016 | 0.0023 | 0.0101 |
Vacuole | 0.0016 | 0.0005 | 0.0008 | 0.0006 | 0.0007 | 0.0027 | 0.0024 | 0.0004 | 0.001 | 0.001 | 0.0017 | 0.0008 | 0.0028 | 0.0002 | 0.0004 | 0.0009 | 0.0001 | 0.0007 |
Vacuole Periphery | 0.0005 | 0.0001 | 0.0003 | 0.0001 | 0.0002 | 0.0016 | 0.0005 | 0.0001 | 0.0002 | 0.0004 | 0.0004 | 0.0002 | 0.0008 | 0 | 0.0001 | 0.0002 | 0.0001 | 0.0004 |
R1 | R2 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Gene Expression | 2.4358 | 6.5323 | 12.926 | 10.504 | 4.7371 | 14.6065 | 9.3568 | 10.4015 | 25.2084 | 10.3598 |
Translational Efficiency | 6.433 | 1.6522 | 0.7134 | 1.9607 | 3.3308 | 1.6593 | 1.6707 | 2.7792 | 1.0618 | 2.1004 |
Dataset | Hit |
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Protein Concentration | ✘ |
Protein Localization | ✘ |
Gene Expression | ✘ |
Translational Efficiency | ✘ |
Temp | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Vph1-GFP) |
---|---|---|---|---|
37℃ | ||||
RT |
Gene / Allele | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Sac6-tdTomato) |
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Gene | Images |
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Gene | Images |
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