Standard name
Human Ortholog
Description Phosphatidylinositol transfer protein; has a potential role in regulating lipid and fatty acid metabolism under heme-depleted conditions; interacts specifically with thioredoxin peroxidase; may have a role in oxidative stress resistance; protein abundance increases in response to DNA replication stress
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Micrographs

ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Neck 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Site 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 – – – – – –
Cell Periphery 0.24 0.13 0.16 0.38 0.31 0.14 0.12 0.07 0.12 0.1 0.17 0.1 0.11 0.13 0.13 0.12 0.07 0.16 0 0 0 0 0 0
Cytoplasm 0.98 0.96 0.98 0.92 0.89 0.95 0.86 0.89 0.86 0.87 0.86 0.85 1.0 0.98 0.99 0.96 0.97 0.96 0.92 0.96 0.92 0.91 0.9 0.89
Endoplasmic Reticulum 0 0 0 0.05 0.06 0 0.07 0 0.07 0.05 0.06 0.05 0 0 0 0 0 0 0 0 0 0 0 0
Endosome 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Golgi 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Mitochondria 0 0 0 0 0 0 0 0 0.05 0.05 0.06 0.07 0 0 0 0 0 0 0 0 0 0 0 0
Nucleus 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nuclear Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nucleolus 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Peroxisomes 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
SpindlePole 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Vac/Vac Membrane 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0 0 0 3 3 1 0 1 8 2 5 5 0 0 0 1 1 1 2 2 4 0 1 2
Bud 2 4 2 2 1 15 12 11 5 14 10 20 0 0 0 0 1 0 0 0 0 0 0 2
Bud Neck 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 1 3 3
Bud Site 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 – – – – – –
Cell Periphery 84 62 81 119 149 83 91 52 76 71 116 89 19 33 34 30 17 32 4 2 6 1 6 5
Cytoplasm 349 442 511 289 429 554 671 655 542 625 585 743 176 239 262 249 232 194 345 448 476 158 211 239
Endoplasmic Reticulum 6 15 7 17 29 13 56 28 47 36 40 42 0 6 3 8 4 2 6 3 16 2 2 7
Endosome 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 1 3 2 2 0 0 1
Golgi 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 2 1
Mitochondria 0 1 1 1 1 8 18 20 34 33 40 65 0 0 1 4 2 1 2 1 1 1 0 0
Nucleus 3 4 2 1 4 0 2 7 1 3 1 4 0 3 1 3 0 6 0 0 0 0 0 0
Nuclear Periphery 0 0 0 0 0 0 2 2 1 1 0 3 0 0 0 0 0 0 1 0 0 0 0 0
Nucleolus 0 0 0 0 0 0 1 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0
Peroxisomes 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
SpindlePole 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0
Vac/Vac Membrane 1 2 1 4 4 9 32 31 11 26 5 29 0 0 1 5 4 1 3 1 3 3 3 1
Unique Cell Count 356 461 519 314 480 585 782 740 633 721 680 877 176 245 265 259 238 203 375 468 520 173 235 268
Labelled Cell Count 445 530 605 436 620 683 886 810 725 812 803 1003 195 281 302 301 262 239 375 468 520 173 235 268


Ambiguous

(Huh et al. Nature 2003 425:686)
Screen WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 AF100 AF140 AF180
Mean Cell GFP Intensity (1e-4) 16.2 14.1 11.8 11.2 11.3 11.0 10.8 10.6 10.9 10.5 10.3 9.9 13.8 13.5 13.2 15.6 15.6 16.0 14.3 15.1 15.9
Std Deviation (1e-4) 2.5 2.5 2.3 2.0 1.9 1.9 2.1 2.0 2.1 2.0 1.8 2.2 2.0 1.9 1.8 5.8 3.7 4.3 2.5 2.5 2.7
Intensity Change (Log2) – – – -0.07 -0.06 -0.1 -0.13 -0.15 -0.11 -0.16 -0.19 -0.25 0.22 0.2 0.17 0.41 0.4 0.44 0.28 0.36 0.44


Localization RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3
Cortical Patches 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud 0 0 2.9 2.0 1.9 0 2.4 1.9 2.7 0 0 0 0 0 0
Bud Neck 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Site 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cell Periphery 7.3 5.8 -0.7 -2.1 -4.9 -1.8 -3.1 0.7 -3.0 -1.6 -0.8 -1.0 -1.5 -3.2 0.1
Cytoplasm -4.6 -6.1 -3.4 -7.8 -6.6 -7.7 -7.4 -7.6 -8.2 1.7 -0.9 0.5 -2.0 -0.9 -2.3
Endoplasmic Reticulum 3.4 4.0 1.1 4.8 2.6 4.9 3.5 4.0 3.4 0 0 0 0 0 0
Endosome 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Golgi 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Mitochondria 0 0 0 3.1 3.4 5.1 4.7 5.4 6.1 0 0 0 0 0 0
Nucleus 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nuclear Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nucleolus 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Peroxisomes 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
SpindlePole 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Vacuole 0 0 0 4.4 4.4 2.6 4.1 0 3.9 0 0 0 0 0 0

Images

Circle plot not available

Protein Concentration and Protein Localization Data

R1 R2 R3
G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase
Concentration 6.9614 8.4206 6.9634 6.272 6.3368 7.1252 10.3579 12.6265 11.8536 11.9997 11.3209 11.2195 10.0264 11.0256 10.4368 9.003 9.8728 10.2103
Actin 0.0392 0.0072 0.0177 0.0684 0.0344 0.0061 0.0199 0.0015 0.0016 0.0016 0.0101 0.0037 0.0006 0.0007 0.0027 0.0138 0.0004 0.0009
Bud 0.0007 0.0079 0.0016 0.0017 0.0015 0.0103 0.0005 0.0001 0.0001 0.0002 0.0003 0.0002 0 0.0001 0.0001 0.0001 0 0
Bud Neck 0.0033 0.0007 0.002 0.0034 0.0034 0.006 0.0016 0.0004 0.0015 0.0009 0.0015 0.006 0.0004 0.0004 0.0009 0.0009 0.0009 0.0096
Bud Periphery 0.001 0.0027 0.0019 0.003 0.0026 0.0052 0.0005 0.0001 0.0001 0.0002 0.0003 0.0002 0.0001 0 0.0001 0 0 0
Bud Site 0.0038 0.0243 0.0135 0.0066 0.0049 0.0012 0.0032 0.0031 0.0015 0.0002 0.0006 0.0007 0.0002 0.0034 0.0003 0.0003 0.0001 0.0001
Cell Periphery 0.0015 0.001 0.0011 0.0013 0.0015 0.0009 0.0019 0.0011 0.0009 0.0006 0.0004 0.0003 0.0009 0.0004 0.0002 0.0002 0.0001 0.0002
Cytoplasm 0.8402 0.9314 0.8771 0.8161 0.813 0.921 0.9133 0.9806 0.9809 0.9727 0.8924 0.9703 0.9727 0.9909 0.9738 0.9564 0.9887 0.983
Cytoplasmic Foci 0.0115 0.0011 0.0117 0.0327 0.0181 0.011 0.0164 0.0013 0.0036 0.0028 0.0169 0.004 0.0004 0.0004 0.0025 0.0122 0.001 0.0005
Eisosomes 0.0003 0 0.0004 0.0003 0.0001 0 0.0001 0 0 0 0.0002 0 0.0001 0 0 0.0001 0 0
Endoplasmic Reticulum 0.0092 0.0075 0.0043 0.01 0.0078 0.0042 0.0054 0.0025 0.003 0.0104 0.0193 0.0045 0.0082 0.0014 0.0026 0.0055 0.0042 0.0032
Endosome 0.0249 0.0002 0.0136 0.0083 0.039 0.0048 0.0057 0.0004 0.0018 0.0014 0.0166 0.0008 0.0027 0.0001 0.0014 0.0009 0.0005 0.0001
Golgi 0.0059 0.0001 0.0105 0.0064 0.0139 0.0035 0.0037 0.0001 0.0007 0.0004 0.0042 0.0004 0.0003 0 0.0006 0.0006 0 0
Lipid Particles 0.0181 0.0001 0.0069 0.0126 0.0197 0.0042 0.0013 0.0001 0.0001 0.0004 0.009 0.0002 0.0006 0 0.0034 0.0005 0 0
Mitochondria 0.0158 0.0005 0.0082 0.0019 0.0109 0.0031 0.0013 0 0.0002 0.0001 0.0006 0.0001 0.002 0 0.0002 0.0001 0 0
None 0.0056 0.0021 0.0162 0.0082 0.0014 0.0033 0.0184 0.006 0.0018 0.0055 0.0209 0.0053 0.0023 0.0009 0.007 0.0062 0.0019 0.0008
Nuclear Periphery 0.004 0.001 0.0011 0.0014 0.0077 0.0021 0.0007 0.0005 0.0003 0.0004 0.0017 0.0004 0.0036 0.0002 0.0006 0.0004 0.0005 0.0002
Nucleolus 0.0022 0.0002 0.0004 0.0003 0.0011 0.0005 0.0001 0 0 0 0 0 0.0005 0 0.0001 0 0 0
Nucleus 0.0026 0.0113 0.0021 0.0023 0.0048 0.0095 0.0011 0.0015 0.0011 0.0017 0.0015 0.001 0.0022 0.0009 0.0008 0.0006 0.0011 0.001
Peroxisomes 0.0028 0.0001 0.0038 0.0121 0.0014 0.0009 0.0027 0 0.0003 0 0.0016 0.0006 0 0 0.001 0.0004 0 0
Punctate Nuclear 0.0042 0.0004 0.0017 0.0023 0.0015 0.0009 0.0008 0.0004 0.0001 0.0002 0.0009 0.0012 0.0002 0.0001 0.0014 0.0006 0.0002 0.0001
Vacuole 0.0025 0.0003 0.0037 0.0007 0.0083 0.0009 0.0011 0.0003 0.0003 0.0004 0.001 0.0002 0.001 0.0001 0.0002 0.0002 0.0002 0.0001
Vacuole Periphery 0.0009 0 0.0006 0.0002 0.0031 0.0004 0.0002 0 0 0 0.0002 0 0.0011 0 0.0001 0 0 0

Sequencing Data

R1 R2
G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Post-START S/G2 Metaphase Anaphase Telophase
Gene Expression 90.3766 84.4087 55.4766 47.8286 71.7055 78.1932 65.838 54.8595 51.2588 70.089
Translational Efficiency 0.9647 0.8645 0.8931 0.864 1.008 1.0923 0.9763 0.9432 1.186 1.2329

Hit Data

Dataset Hit
Protein Concentration ✘
Protein Localization ✘
Gene Expression ✔
Translational Efficiency ✘
Standard name
Human Ortholog
Description Phosphatidylinositol transfer protein; has a potential role in regulating lipid and fatty acid metabolism under heme-depleted conditions; interacts specifically with thioredoxin peroxidase; may have a role in oxidative stress resistance; protein abundance increases in response to DNA replication stress
Localization
Cell Percentages cytoplasm (100%)
Cell Cycle Regulation No
Subcompartmental Group cytoplasm-10

Csr1

Csr1


Nearest neighbours ( genes)

correlation threshold

0.6

1.0

0.80


Biological Process (Gene Ontology)
Molecular Function (Gene Ontology)
Cellular Component (Gene Ontology)

Endocytosis
Temp Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Vph1-GFP)
37℃
RT
Cell Cycle Omics

CYCLoPs (Csr1-GFP)
Gene / Allele Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Sac6-tdTomato)
Gene Images
Gene Images
Images are not yet available
Images are not yet available