Standard name | |
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Human Ortholog | |
Description | Histone H3; core histone protein required for chromatin assembly, part of heterochromatin-mediated telomeric and HM silencing; one of two identical histone H3 proteins (see HHT1); regulated by acetylation, methylation, and phosphorylation; H3K14 acetylation plays an important role in the unfolding of strongly positioned nucleosomes during repair of UV damage |
ensLOC | DeepLoc | |||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Localization | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | WT1 | WT2 | WT3 | AF100 | AF140 | AF180 |
Cortical Patches | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 1 |
Bud | 0 | 0 | 0 | 0 | 0 | 0 | – | 2 | 1 | 2 | 0 | 2 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 2 | 3 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | – | 1 | 1 | 3 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 0 | – | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | – | – | – | – | – |
Cell Periphery | 0 | 1 | 1 | 1 | 1 | 0 | – | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 2 | 0 | 0 | 1 | 0 | 0 | 0 |
Cytoplasm | 38 | 57 | 53 | 50 | 77 | 63 | – | 129 | 82 | 93 | 56 | 64 | 85 | 60 | 64 | 62 | 20 | 38 | 49 | 72 | 59 | 43 | 71 | 82 |
Endoplasmic Reticulum | 0 | 0 | 1 | 1 | 0 | 0 | – | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 4 | 4 | 2 | 0 | 0 | 0 | 0 | 0 | 0 |
Endosome | 0 | 0 | 0 | 0 | 1 | 1 | – | 2 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 1 | 1 | 1 | 0 | 0 | 2 | 1 | 1 | 2 |
Golgi | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 1 |
Mitochondria | 4 | 4 | 2 | 11 | 6 | 17 | – | 32 | 87 | 67 | 31 | 82 | 0 | 3 | 0 | 4 | 1 | 1 | 2 | 6 | 8 | 0 | 3 | 4 |
Nucleus | 0 | 1 | 0 | 0 | 3 | 1 | – | 0 | 0 | 1 | 0 | 1 | 1 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nuclear Periphery | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleolus | 1 | 0 | 0 | 2 | 2 | 1 | – | 3 | 1 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Peroxisomes | 0 | 0 | 0 | 0 | 2 | 0 | – | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 0 | 0 | 0 | 0 | 0 | 0 | – | 3 | 1 | 3 | 0 | 4 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 0 | 2 | 0 | 1 | 2 |
Vac/Vac Membrane | 0 | 0 | 2 | 0 | 1 | 2 | – | 3 | 4 | 3 | 1 | 2 | 0 | 0 | 0 | 2 | 2 | 1 | 1 | 4 | 3 | 1 | 4 | 6 |
Unique Cell Count | 41 | 60 | 56 | 55 | 86 | 73 | 152 | 137 | 135 | 76 | 125 | 86 | 64 | 65 | 70 | 25 | 40 | 65 | 89 | 87 | 54 | 93 | 113 | |
Labelled Cell Count | 43 | 63 | 59 | 65 | 93 | 85 | 179 | 180 | 172 | 90 | 156 | 87 | 64 | 65 | 78 | 29 | 45 | 65 | 89 | 87 | 54 | 93 | 113 |
Screen | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | AF100 | AF140 | AF180 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Mean Cell GFP Intensity (1e-4) | 3.4 | 4.0 | 4.3 | 5.6 | 6.8 | 4.3 | – | 5.3 | 3.0 | 3.8 | 3.9 | 3.3 | 4.9 | 4.4 | 4.8 | 5.1 | 5.8 | 6.1 | 4.0 | 5.4 | 6.3 |
Std Deviation (1e-4) | 0.6 | 0.8 | 3.0 | 4.6 | 5.1 | 3.7 | – | 4.8 | 2.2 | 2.8 | 3.4 | 3.2 | 2.2 | 1.5 | 2.5 | 1.2 | 2.2 | 2.4 | 1.2 | 3.0 | 4.1 |
Intensity Change (Log2) | – | – | – | 0.39 | 0.66 | -0.01 | – | 0.3 | -0.51 | -0.18 | -0.13 | -0.36 | 0.19 | 0.04 | 0.17 | 0.25 | 0.44 | 0.5 | -0.1 | 0.33 | 0.55 |
Localization | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Actin | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Bud | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Bud Neck | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Bud Site | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Cell Periphery | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Cyto | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Endoplasmic Reticulum | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Endosome | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Golgi | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Mitochondria | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Nuclear Periphery | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Nuc | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Nucleolus | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Peroxisomes | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
SpindlePole | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Vac | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Cortical Patches | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Cytoplasm | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Nucleus | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Vacuole | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
R1 | R2 | R3 | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Concentration | 1.544 | -0.3882 | -0.1959 | -0.0449 | -0.0412 | -0.283 | 2.0669 | -1.0396 | -0.9508 | -0.4228 | -0.9215 | -0.5637 | 6.6829 | 0.115 | 0.4513 | 0.4478 | -0.0538 | 0.4487 |
Actin | 0.0873 | 0.0028 | 0.0213 | 0.0075 | 0.0998 | 0.0087 | 0.1346 | 0.0004 | 0.0006 | 0.0281 | 0.0046 | 0.0236 | 0.2769 | 0.0013 | 0.0021 | 0.0103 | 0 | 0.004 |
Bud | 0.0013 | 0.0014 | 0.001 | 0.0073 | 0.0139 | 0.0002 | 0.0014 | 0.002 | 0.0002 | 0.0009 | 0.0003 | 0.0002 | 0.0019 | 0.0024 | 0.0008 | 0.0002 | 0 | 0.002 |
Bud Neck | 0.0988 | 0.0003 | 0.0013 | 0.0027 | 0.0015 | 0.0007 | 0.0016 | 0.0001 | 0.0131 | 0.0258 | 0.0001 | 0.0008 | 0.0019 | 0.0001 | 0.0002 | 0.0001 | 0 | 0.0032 |
Bud Periphery | 0.0017 | 0.0028 | 0.0025 | 0.0279 | 0.0353 | 0.0002 | 0.0016 | 0.004 | 0.0003 | 0.0024 | 0.0003 | 0.0005 | 0.0018 | 0.0042 | 0.0032 | 0.0003 | 0 | 0.0037 |
Bud Site | 0.0322 | 0.0103 | 0.0059 | 0.012 | 0.0275 | 0.0007 | 0.0085 | 0.0012 | 0.0008 | 0.0055 | 0.0008 | 0.0003 | 0.0145 | 0.0018 | 0.0145 | 0.0004 | 0 | 0.0034 |
Cell Periphery | 0.0022 | 0.0002 | 0.0002 | 0.0006 | 0.0016 | 0.0001 | 0.0006 | 0.0001 | 0.0002 | 0.0009 | 0 | 0.0002 | 0.0005 | 0.0001 | 0.0006 | 0 | 0 | 0.0004 |
Cytoplasm | 0.0173 | 0.0549 | 0.0537 | 0.0197 | 0.0678 | 0.0808 | 0.1213 | 0.0877 | 0.0717 | 0.0892 | 0.0939 | 0.1191 | 0.1038 | 0.0387 | 0.0315 | 0.0443 | 0.1058 | 0.1275 |
Cytoplasmic Foci | 0.1517 | 0.0045 | 0.0128 | 0.0478 | 0.0134 | 0.0398 | 0.0994 | 0.0057 | 0.0164 | 0.0167 | 0.0394 | 0.0092 | 0.0729 | 0.0053 | 0.0047 | 0.0085 | 0.0035 | 0.0098 |
Eisosomes | 0.0029 | 0.0001 | 0.0001 | 0.0001 | 0.0006 | 0.0001 | 0.0021 | 0.0002 | 0.0001 | 0.0006 | 0 | 0.0002 | 0.0008 | 0.0001 | 0.0002 | 0.0002 | 0 | 0.0001 |
Endoplasmic Reticulum | 0.0047 | 0.0003 | 0.0028 | 0.0007 | 0.0076 | 0.0006 | 0.0124 | 0.0008 | 0.0004 | 0.0014 | 0.0002 | 0.0051 | 0.0127 | 0.0002 | 0.0008 | 0.0003 | 0.0002 | 0.0013 |
Endosome | 0.0744 | 0.0029 | 0.0103 | 0.028 | 0.034 | 0.014 | 0.145 | 0.0021 | 0.0075 | 0.0257 | 0.0126 | 0.025 | 0.0529 | 0.0012 | 0.0211 | 0.0194 | 0.0008 | 0.0079 |
Golgi | 0.0265 | 0.0019 | 0.0031 | 0.0289 | 0.0401 | 0.017 | 0.0771 | 0.0005 | 0.0043 | 0.0108 | 0.0093 | 0.0068 | 0.0361 | 0.0015 | 0.0049 | 0.0291 | 0 | 0.0049 |
Lipid Particles | 0.0427 | 0.0027 | 0.0033 | 0.0221 | 0.0112 | 0.013 | 0.0354 | 0.0009 | 0.0015 | 0.003 | 0.008 | 0.0094 | 0.0289 | 0.0005 | 0.0035 | 0.0036 | 0 | 0.0037 |
Mitochondria | 0.0152 | 0.0098 | 0.0051 | 0.0148 | 0.0463 | 0.0075 | 0.0204 | 0.0027 | 0.0162 | 0.0825 | 0.0021 | 0.0094 | 0.0108 | 0.0003 | 0.0027 | 0.1016 | 0.0001 | 0.0008 |
None | 0.288 | 0.9015 | 0.8656 | 0.7323 | 0.5369 | 0.7961 | 0.2577 | 0.8871 | 0.8637 | 0.6945 | 0.7679 | 0.7665 | 0.2276 | 0.94 | 0.9055 | 0.7679 | 0.8888 | 0.8188 |
Nuclear Periphery | 0.0177 | 0.0002 | 0.0018 | 0.0018 | 0.0112 | 0.0006 | 0.0098 | 0.0005 | 0.0002 | 0.0008 | 0.0001 | 0.0013 | 0.0612 | 0.0001 | 0.0003 | 0.0001 | 0.0001 | 0.0005 |
Nucleolus | 0.0051 | 0.0001 | 0.0004 | 0.0006 | 0.005 | 0.0002 | 0.0011 | 0.0004 | 0.0004 | 0.0003 | 0.0001 | 0.0004 | 0.0008 | 0 | 0.0001 | 0 | 0 | 0.0001 |
Nucleus | 0.0101 | 0.0002 | 0.0006 | 0.0008 | 0.0111 | 0.0004 | 0.0027 | 0.0005 | 0.0003 | 0.0006 | 0.0002 | 0.0008 | 0.0067 | 0.0001 | 0.0003 | 0.0001 | 0.0001 | 0.0008 |
Peroxisomes | 0.0494 | 0.0019 | 0.0035 | 0.0255 | 0.0045 | 0.0155 | 0.028 | 0.001 | 0.0006 | 0.0046 | 0.0476 | 0.0111 | 0.0638 | 0.0017 | 0.0006 | 0.0129 | 0 | 0.005 |
Punctate Nuclear | 0.0446 | 0.0002 | 0.0013 | 0.0023 | 0.0022 | 0.0025 | 0.0174 | 0.0007 | 0.0005 | 0.0036 | 0.0007 | 0.0007 | 0.0164 | 0.0001 | 0.0002 | 0.0001 | 0 | 0.0007 |
Vacuole | 0.0202 | 0.0007 | 0.003 | 0.0155 | 0.0232 | 0.0006 | 0.0158 | 0.0013 | 0.0008 | 0.0016 | 0.0108 | 0.0081 | 0.0039 | 0.0002 | 0.0018 | 0.0003 | 0.0004 | 0.0012 |
Vacuole Periphery | 0.006 | 0.0001 | 0.0002 | 0.0011 | 0.0051 | 0.0006 | 0.0062 | 0.0002 | 0.0002 | 0.0006 | 0.0009 | 0.0018 | 0.0031 | 0 | 0.0004 | 0.0003 | 0.0001 | 0.0002 |
R1 | R2 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Gene Expression | 1496.7104 | 995.9759 | 236.8545 | 253.2548 | 1613.3545 | 802.2756 | 773.472 | 542.1043 | 458.6573 | 1227.4875 |
Translational Efficiency | 1.7031 | 1.8019 | 1.4704 | 1.4807 | 1.4851 | 3.0789 | 1.7731 | 1.596 | 1.5726 | 2.0292 |
Dataset | Hit |
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Protein Concentration | ✘ |
Protein Localization | ✘ |
Gene Expression | ✔ |
Translational Efficiency | ✘ |
Temp | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Vph1-GFP) |
---|---|---|---|---|
37℃ | ||||
RT |
Gene / Allele | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Sac6-tdTomato) |
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Gene | Images |
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Gene | Images |
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