Standard name
Human Ortholog
Description Subunit of the signal peptidase complex (SPC); SPC cleaves the signal sequence from proteins targeted to the endoplasmic reticulum (ER); homolog of the SPC12 subunit of mammalian signal peptidase complex; protein abundance increases in response to DNA replication stress

Micrographs

ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0 0 0 0 0 0 0 0 0 0 0 0 0.06 0 0.09 0.12 0 0 0 0 0 0 0
Bud 0 0 0 0 0 0 0 0.05 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Neck 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Site 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cell Periphery 0 0 0.07 0.06 0.09 0 0.05 0.07 0.08 0.11 0.1 0.06 0.16 0.17 0.3 0.26 0.22 0 0 0 0 0 0
Cytoplasm 0.06 0.1 0.18 0.21 0.2 0.22 0.17 0.16 0.13 0.2 0.17 0.11 0.13 0.15 0.21 0.32 0.24 0 0 0 0 0 0
Endoplasmic Reticulum 0.86 0.84 0.58 0.33 0.55 0.59 0.51 0.32 0.29 0.3 0.34 0.85 0.82 0.7 0 0 0 0.91 0.88 0.83 0.82 0.81 0.78
Endosome 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Golgi 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.07 0.07 0.06 0 0 0 0 0 0
Mitochondria 0 0 0.3 0.38 0.22 0.26 0.44 0.52 0.44 0.57 0.57 0 0 0 0.12 0.07 0.06 0 0 0 0 0 0
Nucleus 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nuclear Periphery 0 0 0.08 0 0 0 0.07 0 0.05 0 0.08 0 0 0 0 0 0 0 0 0 0 0 0
Nucleolus 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Peroxisomes 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
SpindlePole 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Vac/Vac Membrane 0.15 0.12 0 0.25 0.14 0.1 0.08 0.21 0.29 0.1 0.08 0 0 0.15 0.26 0.22 0.45 0 0 0 0 0.06 0.09
ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 25 12 4 2 3 3 2 2 7 3 6 9 20 7 11 10 1 9 5 2 7 7 6
Bud 1 1 1 0 0 1 1 9 1 4 5 1 1 0 0 1 0 1 0 0 0 2 1
Bud Neck 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 2 2
Bud Site 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
Cell Periphery 15 7 6 5 11 2 10 13 16 17 17 20 51 70 39 21 11 2 2 1 2 1 4
Cytoplasm 38 30 16 18 25 35 35 30 26 30 30 37 41 62 27 26 12 7 6 1 2 7 13
Endoplasmic Reticulum 505 241 52 28 69 92 105 58 59 45 61 279 264 279 2 1 2 589 282 85 229 308 358
Endosome 5 1 2 1 3 1 0 2 0 0 1 0 0 2 0 0 1 5 2 0 2 2 2
Golgi 9 3 0 3 0 0 0 1 0 0 0 2 3 1 9 6 3 2 3 2 4 4 4
Mitochondria 7 5 27 32 28 40 90 94 91 84 102 0 0 1 16 6 3 11 5 3 12 14 15
Nucleus 1 0 1 1 0 1 3 1 3 1 1 1 0 1 4 2 0 0 0 1 0 0 2
Nuclear Periphery 26 8 7 1 2 3 15 6 11 6 14 10 13 6 5 1 0 6 1 0 3 3 3
Nucleolus 0 0 0 1 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0
Peroxisomes 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
SpindlePole 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0
Vac/Vac Membrane 89 36 3 21 18 16 16 38 59 15 15 7 5 62 34 18 22 6 5 1 10 21 39
Unique Cell Count 587 288 89 85 125 156 205 182 206 148 178 327 323 401 129 81 49 650 321 104 279 380 460
Labelled Cell Count 721 344 119 113 159 194 277 254 275 205 253 366 398 491 149 93 55 650 321 104 279 380 460


Endoplasmic Reticulum

(Huh et al. Nature 2003 425:686)
Screen WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 AF100 AF140 AF180
Mean Cell GFP Intensity (1e-4) 10.2 9.7 7.2 7.9 7.9 7.6 6.8 7.2 7.1 7.1 7.2 10.5 10.5 10.5 10.4 10.3 10.4 11.4 11.0 11.1
Std Deviation (1e-4) 1.6 1.5 1.3 2.0 1.8 1.3 1.5 1.6 1.5 1.4 1.5 1.7 1.6 1.7 1.7 1.7 1.9 1.9 2.0 1.9
Intensity Change (Log2) 0.14 0.13 0.08 -0.07 0.0 -0.02 -0.03 0.0 0.54 0.55 0.54 0.54 0.51 0.53 0.66 0.61 0.63


Localization RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3
Cortical Patches 0 0 0 0 0 0 0 0 0 0.6 0 1.2 1.9 0
Bud 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Neck 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Site 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cell Periphery -0.2 0.5 0 0 0.1 0.3 1.2 0.8 -0.2 2.2 2.5 4.2 3.4 2.7
Cytoplasm 0.5 0.4 0.8 -0.2 -0.3 -1.2 0.4 -0.2 -1.7 -1.3 -0.6 0.5 2.1 0.9
Endoplasmic Reticulum -3.4 -0.5 0.1 -1.1 -4.2 -4.8 -4.2 -3.8 5.6 4.6 2.0 -9.6 -8.0 -6.3
Endosome 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Golgi 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Mitochondria 1.0 -1.3 -0.8 2.2 3.3 2.2 3.9 4.2 -10.3 -10.2 -11.1 -3.3 -3.8 -3.3
Nucleus 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nuclear Periphery 0 0 0 -0.2 0 -0.8 0 0 0 0 0 0 0 0
Nucleolus 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Peroxisomes 0 0 0 0 0 0 0 0 0 0 0 0 0 0
SpindlePole 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Vacuole 4.1 2.7 1.9 1.4 3.8 4.9 1.9 1.6 0 0 3.0 4.4 3.7 6.1

Images

Circle plot not available

Protein Concentration and Protein Localization Data

R1 R2 R3
G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase
Concentration 7.2105 6.6966 6.6204 6.4868 6.1704 6.5543 9.1138 8.8238 8.606 8.3927 8.633 8.725 7.3414 6.5636 6.5726 6.8127 6.419 6.3633
Actin 0.0004 0.0008 0.0004 0.0001 0.0002 0.0005 0.0317 0.0012 0.0066 0.0008 0.0229 0.0008 0.015 0.0046 0.0011 0.0182 0.0207 0.0002
Bud 0.0005 0.0091 0.0001 0 0 0.0005 0.0002 0 0.0004 0 0.0001 0 0.0004 0.0002 0.0001 0.0005 0.0002 0
Bud Neck 0.0001 0.0005 0.0005 0.0002 0.0002 0.0011 0.0007 0.0001 0.0002 0.0002 0.001 0.0001 0.0087 0.0004 0.0004 0.0019 0.0008 0.0013
Bud Periphery 0.0001 0.0024 0.0001 0 0 0.0002 0.0005 0 0.0059 0.0001 0.0005 0 0.0005 0.0002 0.0001 0.001 0.0006 0
Bud Site 0.0011 0.0077 0.0048 0 0 0.0001 0.0027 0.0001 0.0002 0 0.0002 0 0.0142 0.0033 0.0005 0.0014 0.0006 0
Cell Periphery 0.0004 0.001 0.0009 0.0002 0.0001 0.0007 0.0006 0.001 0.0008 0.0006 0.0005 0.0003 0.0018 0.0025 0.0013 0.0006 0.0007 0.0004
Cytoplasm 0.0281 0.0569 0.0402 0.0078 0.0177 0.0542 0.0171 0.0277 0.0077 0.0148 0.0212 0.0192 0.0568 0.1283 0.0503 0.0733 0.0328 0.0728
Cytoplasmic Foci 0.002 0.0048 0.0021 0.0017 0.0011 0.0022 0.0028 0.0008 0.0025 0.0068 0.0015 0.0033 0.0132 0.006 0.0041 0.0113 0.0171 0.0031
Eisosomes 0 0 0 0 0 0 0.0002 0 0.0004 0 0.0004 0 0.0002 0.0001 0 0.0003 0.0006 0
Endoplasmic Reticulum 0.9072 0.8025 0.8892 0.9409 0.9337 0.87 0.8549 0.9502 0.9236 0.9375 0.8644 0.9384 0.7652 0.7914 0.8993 0.7124 0.7896 0.875
Endosome 0.0066 0.0262 0.0069 0.0076 0.0086 0.0123 0.0169 0.003 0.0081 0.0098 0.0056 0.007 0.0264 0.0096 0.0088 0.045 0.0221 0.0139
Golgi 0.0003 0.0026 0.0007 0.0006 0.0005 0.0005 0.007 0.001 0.0018 0.0011 0.0004 0.001 0.0066 0.0035 0.0064 0.0288 0.0193 0.0003
Lipid Particles 0.0016 0.0055 0.0019 0.0199 0.0008 0.0021 0.0057 0.0064 0.003 0.0088 0.0011 0.0045 0.0147 0.0179 0.0102 0.0227 0.0251 0.0025
Mitochondria 0.0004 0.0013 0.0004 0.0002 0.0002 0.0007 0.0022 0.0001 0.0012 0.0004 0.0003 0.0003 0.0146 0.0004 0.0011 0.0342 0.0126 0.0002
None 0.0012 0.0015 0.0121 0.0002 0.003 0.0031 0.0129 0.0001 0.01 0.0076 0.0226 0.0013 0.0063 0.0091 0.0011 0.0046 0.0012 0.0006
Nuclear Periphery 0.0315 0.0401 0.0231 0.0161 0.027 0.0293 0.016 0.0058 0.0084 0.0061 0.052 0.009 0.028 0.0112 0.006 0.0219 0.0116 0.0194
Nucleolus 0.0013 0.0012 0.0008 0 0 0.0004 0.0126 0 0.0001 0 0.0001 0.0003 0.0004 0.0001 0 0.0005 0.0004 0
Nucleus 0.0079 0.0111 0.0062 0.0012 0.0036 0.0102 0.0072 0.0003 0.0098 0.0003 0.0013 0.0074 0.0105 0.0049 0.0011 0.0038 0.0015 0.0034
Peroxisomes 0 0.0001 0 0 0 0 0.0022 0 0.006 0.0002 0.0004 0.0002 0.0053 0.0001 0.0008 0.0064 0.0166 0
Punctate Nuclear 0.0042 0.0133 0.0051 0.0001 0.0003 0.0064 0.0004 0.0001 0.0002 0.0007 0.0003 0.0038 0.0015 0.0005 0.0002 0.0047 0.0222 0.0004
Vacuole 0.004 0.0102 0.0035 0.0025 0.0024 0.0048 0.0039 0.0019 0.0025 0.0035 0.0019 0.0023 0.0071 0.0052 0.0069 0.0046 0.002 0.0059
Vacuole Periphery 0.0011 0.0013 0.0008 0.0005 0.0005 0.0009 0.0015 0.0002 0.0006 0.0005 0.0011 0.0005 0.0026 0.0005 0.0003 0.0022 0.0017 0.0005

Sequencing Data

R1 R2
G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Post-START S/G2 Metaphase Anaphase Telophase
Gene Expression 42.5875 20.7658 28.2501 39.4785 30.1181 27.0862 31.4944 27.1612 37.6024 44.6658
Translational Efficiency 2.7724 3.8715 2.577 1.4564 2.8383 4.9022 2.5823 2.7826 1.6787 2.0608

Hit Data

Dataset Hit
Protein Concentration
Protein Localization
Gene Expression
Translational Efficiency

Micrographs

Cell Count

R1 R2 R1 & R2
WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14
1258 1447 2323 349 1830 1680 805 1918 3088 3127 3128 2267

Protein Abundance

R1 R2 R1 & R2
WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14
Mean 878.44 948.55 1092.24 1014.83 869.43 929.82 1040.66 985.44 873.10 938.49 1078.97 989.96
Standard Deviation 472.96 150.48 154.61 149.99 164.45 135.89 134.88 125.93 327.38 143.13 151.47 130.36
Intensity Change Log 2 0.110780 0.314274 0.208222 0.096882 0.259357 0.180698 0.103883 0.287218 0.194597

Localization Score (DeepLoc)

R1 R2 R1 & R2
WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14
Actin 0.000832 0.001360 0.001258 0.000712 0.000744 0.001105 0.001429 0.000654 0.000780 0.001223 0.001302 0.000663
Bud Neck 0.001882 0.000823 0.000954 0.002147 0.000934 0.000390 0.000287 0.000551 0.001320 0.000590 0.000782 0.000796
Bud Site 0.011229 0.006483 0.002837 0.005158 0.004200 0.002001 0.001609 0.001741 0.007063 0.004075 0.002521 0.002267
Cell Periphery 0.003523 0.002453 0.000354 0.000658 0.000917 0.000939 0.000403 0.000495 0.001979 0.001640 0.000366 0.000520
Cytoplasm 0.087033 0.044537 0.051651 0.124755* 0.060224 0.059103 0.021095 0.031196 0.071145 0.052363 0.043787 0.045599
Cytoplasmic Foci 0.021395 0.007714 0.003414 0.019678 0.028164 0.012944 0.000752 0.003059 0.025407 0.010524 0.002729 0.005617
Eisosomes 0.000441 0.000305 0.000142 0.000135 0.000229 0.000398 0.000049 0.000073 0.000315 0.000355 0.000118 0.000082
Endoplasmic Reticulum 0.750957* 0.886037* 0.831413* 0.455023* 0.782701* 0.840974* 0.944547* 0.923315* 0.769769* 0.861827* 0.860528* 0.851222*
Endosome 0.008101 0.004384 0.006521 0.018165 0.010091 0.005811 0.003261 0.004804 0.009280 0.005150 0.005682 0.006861
Golgi 0.009300 0.008728 0.000959 0.002318 0.016786 0.009867 0.000696 0.002295 0.013737 0.009340 0.000891 0.002299
Lipid Particles 0.031292 0.012053 0.006779 0.024812 0.028453 0.022944 0.002803 0.005043 0.029609 0.017904 0.005756 0.008086
Mitochondria 0.003922 0.003161 0.000973 0.000830 0.008556 0.005824 0.000334 0.000882 0.006668 0.004592 0.000809 0.000874
Mitotic Spindle 0.000176 0.000091 0.001371 0.001885 0.000435 0.000612 0.000050 0.000400 0.000330 0.000371 0.001031 0.000629
None 0.008644 0.005635 0.001455 0.002102 0.011566 0.003118 0.000779 0.002106 0.010375 0.004283 0.001281 0.002106
Nuclear Periphery 0.010898 0.001900 0.028897 0.096497 0.008161 0.006996 0.003847 0.004413 0.009276 0.004638 0.022450 0.018590
Nuclear Periphery Foci 0.019537 0.006123 0.043743 0.133353 0.015087 0.014604 0.013178 0.012058 0.016900 0.010680 0.035877 0.030731
Nucleolus 0.000759 0.000103 0.000069 0.001178 0.001114 0.000079 0.000008 0.000032 0.000969 0.000090 0.000053 0.000208
Nucleus 0.014108 0.002373 0.008885 0.042282 0.007453 0.004370 0.001074 0.002554 0.010164 0.003446 0.006875 0.008670
Peroxisomes 0.002002 0.001531 0.000249 0.000678 0.002134 0.001962 0.000203 0.000339 0.002081 0.001762 0.000237 0.000392
Vacuole 0.010351 0.003022 0.007771 0.066499 0.008493 0.004228 0.003501 0.003676 0.009250 0.003670 0.006672 0.013348
Vacuole Periphery 0.003616 0.001185 0.000307 0.001136 0.003557 0.001731 0.000093 0.000314 0.003581 0.001478 0.000252 0.000441

Localization Changes (T-score)

R1 R2 R1 & R2
UBP2_WT UBP14_WT UBP2UBP14_WT UBP2UBP14_UBP2 UBP2UBP14_UBP14 UBP2_WT UBP14_WT UBP2UBP14_WT UBP2UBP14_UBP2 UBP2UBP14_UBP14 UBP2_WT UBP14_WT UBP2UBP14_WT UBP2UBP14_UBP2 UBP2UBP14_UBP14
Actin -1.03 -1.03 0.23 1.26 1.30 -0.92 -0.67 0.33 1.15 0.75 -1.41 -1.37 0.49 1.76 1.64
Bud Neck 2.39 2.19 -0.78 -3.09 -2.93 3.13 3.39 1.35 -0.63 -0.99 3.37 2.43 1.76 -1.06 -0.11
Bud Site 2.07 4.51 2.62 0.47 -2.04 2.28 2.23 2.59 0.41 -0.14 2.62 4.55 4.89 2.15 0.54
Cell Periphery 1.33 5.52 4.87 3.01 -2.68 -0.13 3.30 2.93 3.54 -0.90 0.93 6.44 5.77 4.00 -2.34
Cytoplasm 8.34 6.70 -3.62 -7.83 -7.06 0.26 11.79 8.92 7.60 -3.76 5.95 8.57 7.35 1.95 -0.57
Cytoplasmic Foci 6.58 9.17 0.15 -5.13 -7.02 6.24 13.80 12.34 6.77 -4.65 9.03 15.60 12.95 4.57 -4.54
Eisosomes 0.59 1.24 1.33 2.48 0.02 -1.37 3.38 2.89 2.88 -1.33 -0.34 1.68 2.39 4.09 0.50
Endoplasmic Reticulum -12.37 -7.36 15.36 24.02 21.09 -5.91 -18.49 -16.53 -11.08 3.62 -12.63 -12.45 -9.89 1.72 1.30
Endosome 4.40 1.86 -5.28 -7.44 -6.32 5.13 8.61 5.93 1.35 -2.20 6.88 6.05 3.18 -2.62 -1.74
Golgi 0.41 8.03 4.42 4.05 -1.06 4.01 11.64 9.99 6.65 -3.44 3.75 13.88 11.29 8.28 -3.19
Lipid Particles 7.77 10.48 1.56 -3.92 -5.63 2.11 12.40 11.42 9.63 -2.68 6.40 15.09 13.14 7.54 -2.58
Mitochondria 0.97 5.12 5.49 4.03 0.96 2.23 9.58 8.83 5.49 -2.50 2.68 10.36 10.08 6.58 -0.27
Mitotic Spindle 2.18 -2.54 -1.68 -1.77 -0.45 -0.49 2.49 0.06 0.47 -1.42 -0.20 -2.00 -1.15 -0.88 0.96
None 1.69 5.01 4.30 2.66 -0.92 4.60 6.27 5.18 1.06 -1.90 4.60 7.65 6.43 2.51 -1.31
Nuclear Periphery 7.18 -8.37 -9.56 -10.69 -7.39 0.81 3.11 2.77 2.69 -0.64 4.74 -8.20 -4.95 -8.32 2.08
Nuclear Periphery Foci 7.65 -9.38 -12.60 -14.27 -9.72 0.30 0.91 1.74 1.57 0.58 4.87 -9.91 -6.36 -9.91 2.29
Nucleolus 4.58 4.89 -1.15 -3.06 -3.16 5.32 5.70 5.58 3.27 -4.04 6.80 7.11 5.41 -2.09 -2.77
Nucleus 7.93 3.16 -6.08 -9.09 -7.49 2.99 6.59 4.79 3.16 -3.34 7.85 3.26 1.32 -6.16 -1.72
Peroxisomes 1.07 4.91 3.42 2.61 -2.85 0.29 7.38 7.16 5.24 -1.06 0.99 8.79 7.95 6.30 -1.72
Vacuole 5.89 1.80 -8.57 -9.65 -8.95 4.18 3.08 4.98 0.74 0.01 7.11 2.60 -3.54 -7.94 -5.30
Vacuole Periphery 3.30 5.11 3.58 0.12 -3.19 3.52 8.80 8.18 4.11 -4.26 4.90 9.43 8.81 4.10 -2.96
Standard name
Human Ortholog
Description Subunit of the signal peptidase complex (SPC); SPC cleaves the signal sequence from proteins targeted to the endoplasmic reticulum (ER); homolog of the SPC12 subunit of mammalian signal peptidase complex; protein abundance increases in response to DNA replication stress
Localization
Cell Percentages ER (99%)
Cell Cycle Regulation No
Subcompartmental Group ER-3

Spc1

Spc1


Nearest neighbours ( genes)

correlation threshold

0.6

1.0

0.80


Biological Process (Gene Ontology)

Molecular Function (Gene Ontology)

Cellular Component (Gene Ontology)


Endocytosis
Temp Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Vph1-GFP)
37℃
RT
Cell Cycle Omics

CYCLoPs (Spc1-GFP)
Gene / Allele Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Sac6-tdTomato)
Gene Images
Gene Images
Images are not yet available
Images are not yet available