Standard name
Human Ortholog
Description Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; potential Cdc28p substrate; null mutant is sensitive to expression of the top1-T722A allele
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Micrographs

ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.08 0.07 0.1 0 0 0.05 0 0 0
Bud 0 0 0 0 0 0 0 0 0 0 0.05 0 0 0 0 0.05 0 0 0 0 0 0 0 0
Bud Neck 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Site 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 – – – – – –
Cell Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.05 0 0.05 0 0 0 0 0 0
Cytoplasm 0.94 0.93 0.9 0.93 0.91 0.84 0.68 0.73 0.57 0.6 0.54 0.54 0.94 0.98 0.99 0.79 0.85 0.77 0.73 0.75 0.58 0.67 0.81 0.66
Endoplasmic Reticulum 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.08 0.1 0.05 0 0 0 0 0 0
Endosome 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Golgi 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Mitochondria 0.12 0.05 0.12 0.09 0.09 0.35 0.47 0.39 0.57 0.59 0.71 0.63 0 0 0 0.06 0.05 0.07 0.11 0.08 0.18 0.11 0.09 0.08
Nucleus 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nuclear Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nucleolus 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Peroxisomes 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
SpindlePole 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Vac/Vac Membrane 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.07 0.05 0 0 0.07
ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 2 0 0 1 1 1 0 1 1 1 1 0 0 1 0 23 8 11 7 6 7 2 1 3
Bud 2 2 3 0 0 4 1 6 3 6 9 5 2 3 1 15 3 1 1 3 3 3 2 6
Bud Neck 0 0 1 0 0 1 2 1 0 0 0 0 0 0 0 0 1 0 5 6 4 1 3 2
Bud Site 0 0 0 1 0 0 0 0 1 1 0 1 1 0 0 0 0 0 – – – – – –
Cell Periphery 1 1 1 0 1 0 1 1 4 3 3 2 0 3 3 13 4 5 1 1 0 0 0 2
Cytoplasm 210 266 145 142 155 225 225 251 131 205 102 149 126 311 233 226 99 81 184 232 99 69 147 111
Endoplasmic Reticulum 0 7 3 1 3 1 6 7 6 5 2 2 3 0 0 24 12 5 6 4 6 3 1 3
Endosome 0 1 0 0 0 0 0 2 0 0 0 1 0 3 2 10 2 3 3 4 2 2 2 2
Golgi 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 2
Mitochondria 28 14 19 14 15 95 154 133 131 199 134 174 4 0 2 17 6 7 27 23 30 11 15 13
Nucleus 0 0 0 0 0 1 2 1 1 0 0 0 0 2 1 1 0 1 0 1 0 0 0 0
Nuclear Periphery 0 2 0 0 0 1 0 0 0 2 1 2 0 0 0 0 0 0 0 0 0 0 0 1
Nucleolus 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0
Peroxisomes 0 0 1 1 0 0 0 1 0 2 0 1 0 1 0 3 1 0 0 1 0 0 0 0
SpindlePole 1 1 0 2 1 0 3 2 0 3 0 3 0 1 0 9 1 2 0 0 0 1 1 1
Vac/Vac Membrane 0 1 1 0 1 1 6 6 1 7 4 7 0 1 1 7 1 1 10 22 8 2 1 11
Unique Cell Count 224 285 161 152 171 268 329 344 229 339 189 278 134 318 236 286 117 105 253 310 170 104 182 168
Labelled Cell Count 244 295 174 162 177 330 400 412 279 434 257 347 136 326 243 349 139 118 253 310 170 104 182 168


Cytoplasm

(Huh et al. Nature 2003 425:686)
Screen WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 AF100 AF140 AF180
Mean Cell GFP Intensity (1e-4) 3.8 4.3 3.9 3.9 4.1 3.6 3.2 3.7 3.3 3.2 3.4 3.2 5.1 5.1 5.0 5.9 6.9 7.2 4.5 4.5 5.4
Std Deviation (1e-4) 0.5 0.6 1.1 0.9 1.1 0.9 0.7 0.9 0.7 0.7 1.0 0.7 1.1 1.5 1.5 1.3 1.6 1.1 1.1 1.5 1.6
Intensity Change (Log2) – – – -0.03 0.05 -0.14 -0.28 -0.08 -0.27 -0.32 -0.23 -0.3 0.36 0.37 0.34 0.57 0.81 0.86 0.19 0.2 0.45


Localization RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3
Actin – – – – – – – – – – – – – – –
Bud – – – – – – – – – – – – – – –
Bud Neck – – – – – – – – – – – – – – –
Bud Site – – – – – – – – – – – – – – –
Cell Periphery – – – – – – – – – – – – – – –
Cyto – – – – – – – – – – – – – – –
Endoplasmic Reticulum – – – – – – – – – – – – – – –
Endosome – – – – – – – – – – – – – – –
Golgi – – – – – – – – – – – – – – –
Mitochondria – – – – – – – – – – – – – – –
Nuclear Periphery – – – – – – – – – – – – – – –
Nuc – – – – – – – – – – – – – – –
Nucleolus – – – – – – – – – – – – – – –
Peroxisomes – – – – – – – – – – – – – – –
SpindlePole – – – – – – – – – – – – – – –
Vac – – – – – – – – – – – – – – –
Cortical Patches – – – – – – – – – – – – – – –
Cytoplasm – – – – – – – – – – – – – – –
Nucleus – – – – – – – – – – – – – – –
Vacuole – – – – – – – – – – – – – – –

Images

Circle plot not available

Protein Concentration and Protein Localization Data

R1 R2 R3
G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase
Concentration 0.3411 0.8697 0.8132 0.5854 0.1936 0.8163 0.549 0.742 0.6028 0.2199 0.3007 0.5225 1.9387 1.2812 1.8873 1.5456 1.3015 0.9555
Actin 0.0161 0.006 0.0139 0.0637 0.0005 0.0036 0.0471 0.0018 0.01 0.019 0.0139 0.01 0.1306 0.1473 0.0157 0.0009 0.0011 0.0009
Bud 0.0002 0.0085 0.003 0.0005 0.0001 0.0011 0.0005 0.0007 0.0003 0.0003 0.0065 0.0002 0.0015 0.0004 0.0004 0.0005 0.0093 0.0001
Bud Neck 0.0115 0.002 0.0071 0.0016 0.0005 0.0188 0.0012 0.0005 0.0002 0.0003 0.0004 0.0191 0.0019 0.0007 0.0004 0.0002 0.0002 0.0033
Bud Periphery 0.0004 0.0157 0.0038 0.0022 0.0005 0.0014 0.0011 0.0021 0.0004 0.0002 0.0299 0.0006 0.0022 0.0005 0.0007 0.0006 0.0071 0.0001
Bud Site 0.0067 0.0406 0.0034 0.0006 0.0003 0.0003 0.0027 0.0058 0.0031 0.0001 0.0089 0.0001 0.0068 0.0067 0.0007 0.0005 0.0004 0
Cell Periphery 0.0013 0.003 0.0007 0.0006 0.0006 0.0003 0.0006 0.0008 0.0003 0.0001 0.0004 0.0002 0.0014 0.0009 0.0007 0.0002 0.0002 0.0001
Cytoplasm 0.1963 0.2711 0.3475 0.2792 0.1567 0.4025 0.1319 0.2005 0.1964 0.3097 0.1822 0.2508 0.0692 0.1987 0.2682 0.3128 0.0562 0.3151
Cytoplasmic Foci 0.0289 0.0401 0.0209 0.013 0.008 0.0198 0.0381 0.0117 0.0265 0.0439 0.0324 0.0268 0.1059 0.0402 0.0044 0.0418 0.0126 0.0108
Eisosomes 0.0007 0.0006 0.0006 0.0008 0.0004 0.0001 0.0017 0.0003 0.0003 0.0002 0.0002 0.0002 0.0018 0.001 0.0007 0.0007 0.0002 0.0001
Endoplasmic Reticulum 0.0042 0.0045 0.0029 0.0065 0.0015 0.0047 0.0074 0.0026 0.0021 0.002 0.0011 0.0015 0.009 0.0068 0.0169 0.0014 0.0022 0.0022
Endosome 0.0142 0.0069 0.0064 0.0222 0.0019 0.0076 0.0318 0.0057 0.0185 0.0079 0.0243 0.0096 0.1133 0.0293 0.0113 0.0007 0.0006 0.0061
Golgi 0.0035 0.0008 0.0011 0.0023 0.0002 0.0004 0.0177 0.0014 0.0043 0.001 0.0086 0.001 0.03 0.0071 0.0131 0.0003 0.0002 0.0002
Lipid Particles 0.0183 0.0069 0.0013 0.0009 0.0011 0.0018 0.0241 0.0009 0.0031 0.0007 0.0241 0.0033 0.0507 0.0248 0.001 0.0013 0.0008 0.0005
Mitochondria 0.0018 0.011 0.0022 0.0042 0.0005 0.0004 0.0109 0.002 0.0016 0.0007 0.007 0.0006 0.0112 0.011 0.0255 0.0004 0.0021 0.0008
None 0.6795 0.5674 0.5729 0.5887 0.8231 0.5291 0.6406 0.7528 0.7215 0.6003 0.6311 0.6642 0.3375 0.5042 0.6353 0.6345 0.8605 0.655
Nuclear Periphery 0.0013 0.0015 0.0007 0.0019 0.0004 0.0009 0.0052 0.0006 0.0007 0.0005 0.001 0.0003 0.0135 0.0011 0.0018 0.0003 0.0074 0.0007
Nucleolus 0.0006 0.0032 0.0027 0.0006 0.0008 0.0004 0.0022 0.0003 0.0003 0.0001 0.0004 0.0001 0.0042 0.0005 0.0001 0.0001 0.0015 0.0001
Nucleus 0.0007 0.0019 0.0019 0.0016 0.0007 0.0015 0.0064 0.0009 0.0006 0.0004 0.0006 0.0003 0.007 0.0011 0.0006 0.0003 0.0106 0.0005
Peroxisomes 0.0061 0.0018 0.001 0.0006 0.0002 0.0003 0.0144 0.0012 0.0044 0.0102 0.0198 0.0086 0.0329 0.0134 0.0001 0.0009 0.0006 0.0002
Punctate Nuclear 0.0037 0.0017 0.0015 0.0005 0.0006 0.0018 0.0103 0.0004 0.0015 0.0004 0.0016 0.0015 0.0521 0.0017 0.0003 0.0009 0.0237 0.0004
Vacuole 0.0036 0.0044 0.004 0.0062 0.0012 0.0029 0.0031 0.0063 0.003 0.0015 0.0046 0.0008 0.0139 0.0022 0.0014 0.0005 0.0017 0.0022
Vacuole Periphery 0.0005 0.0004 0.0004 0.0014 0.0001 0.0002 0.0011 0.0005 0.0005 0.0003 0.0009 0.0002 0.0033 0.0005 0.0008 0.0001 0.0008 0.0004

Sequencing Data

R1 R2
G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Post-START S/G2 Metaphase Anaphase Telophase
Gene Expression 11.6531 7.1618 5.7975 9.2588 5.6658 10.1908 9.0516 6.8868 9.161 12.9716
Translational Efficiency 0.6881 0.4131 0.7132 0.7665 1.4847 1.1001 0.4472 0.9098 0.9223 0.7168

Hit Data

Dataset Hit
Protein Concentration ✘
Protein Localization ✘
Gene Expression ✘
Translational Efficiency ✘

Micrographs

Cell Count

R1 R2 R1 & R2
WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14
2681 724 1097 1520 1698 870 233 2982 4379 1594 1330 4502

Protein Abundance

R1 R2 R1 & R2
WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14
Mean 691.09 741.70 877.49 869.04 712.14 746.51 993.37 937.92 699.25 744.33 897.79 914.66
Standard Deviation 69.96 88.24 107.53 119.51 77.03 94.90 99.17 117.51 73.50 91.96 114.90 122.60
Intensity Change Log 2 — 0.101962 0.344509 0.330549 — 0.068001 0.480170 0.397304 — 0.084827 0.414950 0.364813

Localization Score (DeepLoc)

R1 R2 R1 & R2
WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14
Actin 0.000366 0.000579 0.000311 0.004262 0.000197 0.001010 0.001785 0.001340 0.000301 0.000814 0.000569 0.002326
Bud Neck 0.027447 0.033392 0.006984 0.014229 0.013245 0.049333 0.004621 0.016254 0.021940 0.042092 0.006570 0.015571
Bud Site 0.014436 0.026899 0.018910 0.058929 0.008026 0.037860 0.023100 0.045973 0.011951 0.032882 0.019644 0.050347
Cell Periphery 0.000317 0.000178 0.000137 0.000283 0.000144 0.000311 0.000128 0.000078 0.000250 0.000251 0.000135 0.000147
Cytoplasm 0.508577* 0.373341* 0.621988* 0.515083* 0.525387* 0.335458* 0.515917* 0.720444* 0.515095* 0.352665* 0.603406* 0.651108*
Cytoplasmic Foci 0.233722* 0.321162* 0.059682 0.056203 0.266840* 0.319453* 0.066923 0.016391 0.246564* 0.320229* 0.060950 0.029833
Eisosomes 0.000578 0.000208 0.000052 0.000077 0.000201 0.000370 0.000061 0.000031 0.000432 0.000296 0.000054 0.000047
Endoplasmic Reticulum 0.002137 0.001450 0.001828 0.000935 0.001746 0.000899 0.002239 0.000514 0.001986 0.001149 0.001900 0.000656
Endosome 0.015015 0.049104 0.008637 0.009474 0.015958 0.061860 0.013001 0.002067 0.015381 0.056066 0.009401 0.004568
Golgi 0.011232 0.011020 0.000242 0.003840 0.005248 0.013725 0.000274 0.001256 0.008912 0.012496 0.000247 0.002128
Lipid Particles 0.008439 0.008160 0.002871 0.001116 0.008438 0.010494 0.002511 0.000446 0.008439 0.009434 0.002808 0.000672
Mitochondria 0.004480 0.007888 0.000343 0.002437 0.002896 0.012764 0.000065 0.003355 0.003866 0.010549 0.000294 0.003045
Mitotic Spindle 0.000260 0.003312 0.002176 0.037844 0.003226 0.004093 0.001808 0.037018 0.001410 0.003738 0.002111 0.037297
None 0.004345 0.000845 0.002816 0.002433 0.002556 0.000555 0.000733 0.001820 0.003652 0.000687 0.002451 0.002027
Nuclear Periphery 0.000123 0.000198 0.001159 0.000561 0.000287 0.000272 0.000615 0.000620 0.000187 0.000239 0.001063 0.000600
Nuclear Periphery Foci 0.000332 0.000499 0.002873 0.001017 0.000357 0.000457 0.007712 0.000247 0.000342 0.000476 0.003721 0.000507
Nucleolus 0.000843 0.001325 0.000662 0.000365 0.000491 0.000952 0.000166 0.000212 0.000706 0.001122 0.000575 0.000264
Nucleus 0.074827 0.035381 0.135102* 0.053218 0.073670 0.026394 0.051294 0.058228 0.074379 0.030476 0.120420 0.056536
Peroxisomes 0.004321 0.016354 0.002110 0.005346 0.004457 0.016738 0.005221 0.002077 0.004374 0.016564 0.002655 0.003181
Vacuole 0.086418 0.103564 0.130692 0.227163* 0.064889 0.101397 0.301513* 0.090766 0.078070 0.102381 0.160617 0.136817
Vacuole Periphery 0.001785 0.005140 0.000427 0.005186 0.001738 0.005605 0.000313 0.000863 0.001767 0.005394 0.000407 0.002323

Localization Changes (T-score)

R1 R2 R1 & R2
UBP2_WT UBP14_WT UBP2UBP14_WT UBP2UBP14_UBP2 UBP2UBP14_UBP14 UBP2_WT UBP14_WT UBP2UBP14_WT UBP2UBP14_UBP2 UBP2UBP14_UBP14 UBP2_WT UBP14_WT UBP2UBP14_WT UBP2UBP14_UBP2 UBP2UBP14_UBP14
Actin -2.34 0.54 -3.09 -2.77 -3.13 -3.72 -1.84 -3.34 0.42 0.89 -4.06 -1.78 -4.17 -2.10 -2.91
Bud Neck -1.85 13.50 11.27 8.03 -1.51 -9.99 7.03 1.23 10.58 -6.58 -8.20 13.71 10.52 13.12 -4.47
Bud Site -4.42 -0.85 -7.69 -2.52 -5.29 -9.06 -2.45 -9.37 3.34 -1.82 -9.48 -2.18 -11.10 1.34 -4.78
Cell Periphery 6.14 12.55 3.21 -0.04 -1.06 -5.69 3.01 14.11 8.68 5.62 -0.04 11.87 9.25 6.62 2.08
Cytoplasm 12.29 -7.29 7.08 -5.85 11.61 18.33 3.30 -14.10 -31.10 -9.35 21.93 -5.01 -10.22 -28.21 -1.73
Cytoplasmic Foci -9.85 39.67 46.14 32.99 3.25 -5.89 32.24 49.45 40.96 8.32 -11.89 50.84 71.97 53.24 11.63
Eisosomes 11.76 20.44 19.68 7.15 -1.73 -5.55 10.04 12.34 12.43 4.29 5.73 22.35 23.08 14.52 3.48
Endoplasmic Reticulum 1.46 -0.04 2.75 1.44 7.98 2.06 -0.70 3.30 2.51 6.56 2.62 -0.50 4.60 3.05 12.17
Endosome -11.34 8.95 12.56 14.51 3.85 -13.36 4.28 14.96 18.30 6.41 -17.65 9.88 23.72 23.56 10.76
Golgi 0.27 21.67 13.48 7.14 -2.88 -6.46 11.78 9.77 10.46 -1.75 -3.74 24.47 19.08 12.85 -3.33
Lipid Particles 0.23 13.30 20.56 6.76 7.15 -1.78 10.18 13.43 9.73 6.00 -1.29 15.57 24.46 11.88 9.76
Mitochondria -2.86 12.97 7.13 5.66 -2.82 -5.39 6.34 1.87 6.04 -5.07 -5.90 13.64 6.09 7.89 -5.23
Mitotic Spindle -2.77 -5.40 -8.56 -7.03 -7.83 -0.53 0.89 -8.58 -7.99 -9.80 -2.57 -1.54 -13.05 -10.76 -12.73
None 9.20 4.14 4.53 -3.07 1.27 4.63 4.17 0.62 -13.45 -8.99 10.41 4.20 4.70 -9.68 0.13
Nuclear Periphery -3.21 -17.39 -16.11 -13.04 5.98 0.14 -4.92 -5.95 -5.15 -2.10 -1.00 -16.62 -10.96 -8.46 4.22
Nuclear Periphery Foci -2.25 -12.02 -11.51 -6.03 8.34 -0.80 -8.63 2.20 1.71 8.79 -1.86 -14.59 -5.46 -0.84 13.61
Nucleolus -1.41 1.62 11.56 2.86 4.33 -1.31 11.32 6.43 1.83 -7.45 -1.70 1.50 14.72 3.22 4.20
Nucleus 11.83 -14.22 1.08 -9.08 13.74 16.74 3.22 -5.79 -23.46 -6.59 20.84 -13.08 -4.75 -23.06 10.62
Peroxisomes -6.84 4.22 1.76 7.20 -2.10 -8.41 0.77 6.50 10.87 1.28 -10.86 4.07 7.53 12.95 0.36
Vacuole -3.45 -12.49 -33.53 -26.89 -18.48 -7.69 -17.50 -25.79 -13.69 10.71 -7.08 -19.36 -38.81 -26.71 -4.59
Vacuole Periphery -4.36 13.46 -0.56 2.76 -2.49 -5.93 7.19 5.62 8.25 -1.71 -7.35 13.46 2.70 7.99 -2.58
Standard name
Human Ortholog
Description Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; potential Cdc28p substrate; null mutant is sensitive to expression of the top1-T722A allele
Localization
Cell Percentages cytoplasm (83%)
Cell Cycle Regulation No
Subcompartmental Group cytoplasm-9

Tda11

Tda11


Nearest neighbours ( genes)

correlation threshold

0.6

1.0

0.80


Biological Process (Gene Ontology)
Molecular Function (Gene Ontology)
Cellular Component (Gene Ontology)

Endocytosis
Temp Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Vph1-GFP)
37℃
RT
Cell Cycle Omics

CYCLoPs (Tda11-GFP)
Gene / Allele Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Sac6-tdTomato)
Gene Images
Gene Images
Images are not yet available
Images are not yet available