Standard name
Human Ortholog
Description Small plasma membrane protein; confers resistance to amphotericin B and is a potential target of this common antifungal drug; related to a family of plant polypeptides that are overexpressed under high salt concentration or low temperature; not essential for viability; deletion causes hyperpolarization of the plasma membrane potential

Micrographs

ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0 0 0 0 0 0 0 0 0 0 0 0
Bud 0 0 0 0 0 0 0 0 0 0 0 0
Bud Neck 0 0 0 0 0 0 0 0 0 0 0 0
Bud Site 0 0 0 0 0 0
Cell Periphery 0 0 0 0 0 0 0 0 0 0 0 0
Cytoplasm 0.97 0.99 0.95 0.95 0.81 0.7 0.82 0.83 0.69 0.72 0.81 0.72
Endoplasmic Reticulum 0 0 0 0 0 0 0 0 0 0 0 0
Endosome 0 0 0 0 0 0 0 0 0 0 0 0
Golgi 0 0 0 0 0 0 0 0 0 0 0 0
Mitochondria 0 0 0.07 0.14 0.35 0.52 0.07 0 0.15 0.06 0 0
Nucleus 0 0 0 0 0 0 0 0 0 0 0 0
Nuclear Periphery 0 0 0 0 0 0 0 0 0 0 0 0
Nucleolus 0 0 0 0 0 0 0 0 0 0 0 0
Peroxisomes 0 0 0 0 0 0 0 0 0 0 0 0
SpindlePole 0 0 0 0 0 0 0 0 0 0 0 0
Vac/Vac Membrane 0 0 0 0 0 0 0 0 0 0.06 0 0.06
ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 1 0 1 0 0 0 4 3 1 2 0 3
Bud 0 1 1 1 6 9 3 3 2 0 3 2
Bud Neck 3 1 3 3 7 1 2 1 0 0 0 0
Bud Site 0 0 0 0 1 5
Cell Periphery 3 2 3 0 1 2 1 0 2 1 0 0
Cytoplasm 355 273 157 211 306 271 319 237 157 94 110 93
Endoplasmic Reticulum 0 0 0 0 0 2 0 0 2 5 1 3
Endosome 1 1 0 0 1 1 6 3 5 4 1 3
Golgi 2 0 0 0 0 0 3 1 1 1 2 1
Mitochondria 7 3 12 32 132 200 27 12 34 8 2 4
Nucleus 1 0 0 1 0 1 0 0 0 0 1 1
Nuclear Periphery 0 0 1 0 1 0 0 0 0 0 1 0
Nucleolus 0 0 0 0 1 0 0 1 0 0 0 0
Peroxisomes 0 0 0 0 1 0 0 0 0 0 0 0
SpindlePole 2 0 1 0 7 12 6 5 4 0 1 2
Vac/Vac Membrane 1 0 1 0 0 2 7 8 4 7 4 7
Unique Cell Count 365 276 165 223 377 385 391 287 230 131 136 130
Labelled Cell Count 376 281 180 248 464 506 391 287 230 131 136 130


Ambiguous

(Huh et al. Nature 2003 425:686)
Screen WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 AF100 AF140 AF180
Mean Cell GFP Intensity (1e-4) 3.9 3.8 3.2 3.2 2.5 2.5 4.5 4.7 4.5
Std Deviation (1e-4) 0.8 1.0 1.2 1.5 1.3 1.3 1.0 1.3 1.3
Intensity Change (Log2) -0.03 -0.37 -0.39 0.48 0.54 0.49

WT3RAP140RAP300RAP7000246WT30246WT3rpd3Δ_1rpd3Δ_2rpd3Δ_30246WT10246
rapamycinhydroxy-urearpd3 knockoutalpha-factorMultiple Condition Time-Course Intensity PlotsGFP Intensity (1e-4)GFP Intensity (1e-4)GFP Intensity (1e-4)GFP Intensity (1e-4)

Localization RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3
Actin
Bud
Bud Neck
Bud Site
Cell Periphery
Cyto
Endoplasmic Reticulum
Endosome
Golgi
Mitochondria
Nuclear Periphery
Nuc
Nucleolus
Peroxisomes
SpindlePole
Vac
Cortical Patches
Cytoplasm
Nucleus
Vacuole

Images

Circle plot not available

Protein Concentration and Protein Localization Data

R1 R2 R3
G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase
Concentration
Actin 0.0058 0.0002 0.0001 0.0002 0.0002 0.0004 0.0139 0 0.0004 0.0001 0.004 0.005
Bud 0.0091 0.0067 0.0053 0.0149 0.0021 0.0065 0.0018 0.0001 0.0009 0.0001 0.0004 0.0006
Bud Neck 0.0028 0.0015 0.0012 0.0107 0.0001 0.0017 0.0015 0 0.0022 0.0001 0.0005 0.0003
Bud Periphery 0.0038 0.001 0.0011 0.0034 0.0018 0.0034 0.0071 0 0.0026 0.0001 0.001 0.0023
Bud Site 0.0071 0.018 0.0103 0.0197 0.0007 0.0014 0.0021 0.001 0.0053 0.0001 0.0002 0.0001
Cell Periphery 0.0006 0.0001 0.0002 0.0008 0.0001 0.0004 0.0009 0 0.0001 0.0001 0.0001 0.0001
Cytoplasm 0.0142 0.0231 0.0091 0.0172 0.0077 0.0185 0.0182 0.011 0.0137 0.0145 0.0258 0.0228
Cytoplasmic Foci 0.0132 0.003 0.0024 0.0043 0.0018 0.0096 0.0067 0.0006 0.0015 0.0014 0.0013 0.0017
Eisosomes 0.0002 0.0001 0.0001 0.0001 0.0001 0.0001 0.0004 0.0001 0.0002 0.0002 0.0001 0.0001
Endoplasmic Reticulum 0.0006 0.0003 0.0002 0.0004 0.0001 0.0003 0.0019 0.0001 0.0002 0.0002 0.004 0.0009
Endosome 0.0021 0.0004 0.0002 0.0001 0 0.0001 0.0016 0 0.0001 0.0001 0.0013 0.0004
Golgi 0.0008 0.0001 0 0 0 0 0.0013 0 0.0001 0 0.0001 0.0003
Lipid Particles 0.0024 0.0001 0.0001 0.0003 0.0001 0.0002 0.0015 0 0.0001 0.0001 0.0001 0.0004
Mitochondria 0.002 0.0002 0.0003 0.0003 0.0002 0.0006 0.0009 0 0.0002 0.0002 0.0004 0.0002
None 0.9227 0.9353 0.9653 0.9051 0.9823 0.9498 0.9317 0.9782 0.9697 0.982 0.9522 0.9615
Nuclear Periphery 0.0021 0.0002 0.0002 0.0009 0.0001 0.0002 0.0009 0.0001 0.0002 0.0001 0.0038 0.0008
Nucleolus 0.001 0.0007 0.0006 0.0016 0.0002 0.0009 0.001 0.0003 0.0002 0.0001 0.0001 0.0002
Nucleus 0.002 0.004 0.0015 0.0069 0.0006 0.0027 0.001 0.0016 0.0006 0.0002 0.0031 0.0006
Peroxisomes 0.0016 0.0001 0.0001 0.0001 0.0001 0.0001 0.0019 0 0.0002 0.0001 0.0001 0.0004
Punctate Nuclear 0.0036 0.0046 0.0014 0.0111 0.0016 0.0023 0.0026 0.0068 0.0013 0.0002 0.0005 0.0011
Vacuole 0.0019 0.0002 0.0003 0.0014 0.0001 0.0005 0.0009 0 0.0001 0.0001 0.0007 0.0002
Vacuole Periphery 0.0004 0 0.0001 0.0003 0 0.0001 0.0002 0 0 0 0.0003 0.0001

Sequencing Data

R1 R2
G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Post-START S/G2 Metaphase Anaphase Telophase
Gene Expression 338.246 410.9901 431.3181 647.5978 391.7152 229.7487 553.5741 671.1231 542.7358 543.3263
Translational Efficiency 2.5776 2.8264 3.2378 1.7609 2.7107 6.8497 3.2419 2.4498 3.6176 2.7514

Hit Data

Dataset Hit
Protein Concentration
Protein Localization
Gene Expression
Translational Efficiency

Micrographs

Cell Count

R1 R2 R1 & R2
WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14
155 1880 1791 1279 1708 1886 130 1769 1863 3766 1921 3048

Protein Abundance

R1 R2 R1 & R2
WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14
Mean 645.66 700.37 741.59 796.44 644.91 664.84 846.66 800.59 644.97 682.58 748.70 798.85
Standard Deviation 63.28 82.21 83.62 116.59 70.47 80.14 97.45 141.61 69.90 83.10 88.65 131.70
Intensity Change Log 2 0.117343 0.199847 0.302791 0.043909 0.392685 0.311966 0.081114 0.299430 0.307383

Localization Score (DeepLoc)

R1 R2 R1 & R2
WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14
Actin 0.000057 0.000500 0.000075 0.000681 0.000079 0.000500 0.000266 0.000461 0.000077 0.000500 0.000087 0.000553
Bud Neck 0.018879 0.042848 0.002110 0.007465 0.013272 0.053195 0.000705 0.010303 0.013739 0.048030 0.002015 0.009112
Bud Site 0.002264 0.014111 0.004465 0.029426 0.003465 0.014353 0.001966 0.030771 0.003365 0.014233 0.004296 0.030207
Cell Periphery 0.000164 0.000137 0.000118 0.000298 0.000093 0.000179 0.000149 0.000243 0.000099 0.000158 0.000120 0.000266
Cytoplasm 0.371676 0.409374 0.459044 0.444052 0.513763 0.367645 0.198892 0.544903 0.501942 0.388476 0.441439 0.502584
Cytoplasmic Foci 0.331707 0.252828 0.017144 0.022491 0.227500 0.298944 0.026773 0.029090 0.236170 0.275923 0.017796 0.026321
Eisosomes 0.000214 0.000144 0.000030 0.000050 0.000132 0.000249 0.000083 0.000044 0.000139 0.000196 0.000033 0.000047
Endoplasmic Reticulum 0.000384 0.000456 0.000692 0.003142 0.000448 0.000554 0.002532 0.000691 0.000443 0.000505 0.000817 0.001719
Endosome 0.035638 0.018596 0.001504 0.008373 0.010462 0.023669 0.005790 0.008706 0.012556 0.021137 0.001794 0.008566
Golgi 0.001421 0.005883 0.000106 0.006987 0.002221 0.008807 0.004049 0.004395 0.002155 0.007348 0.000372 0.005483
Lipid Particles 0.018952 0.006089 0.000881 0.001517 0.007476 0.009880 0.004196 0.000972 0.008431 0.007988 0.001106 0.001201
Mitochondria 0.006688 0.015218 0.000368 0.008262 0.003722 0.023932 0.000350 0.003037 0.003969 0.019582 0.000367 0.005230
Mitotic Spindle 0.000053 0.007482 0.001471 0.032085 0.002565 0.008682 0.001722 0.038018 0.002356 0.008083 0.001488 0.035528
None 0.003922 0.002372 0.008346 0.006731 0.004412 0.002003 0.003064 0.005883 0.004371 0.002187 0.007989 0.006239
Nuclear Periphery 0.001117 0.000339 0.000770 0.001891 0.000399 0.000318 0.001470 0.000930 0.000459 0.000328 0.000817 0.001333
Nuclear Periphery Foci 0.000336 0.000211 0.000286 0.001867 0.000410 0.000220 0.000850 0.000521 0.000404 0.000215 0.000324 0.001085
Nucleolus 0.001653 0.001757 0.000644 0.000774 0.002323 0.001494 0.000832 0.000846 0.002267 0.001626 0.000656 0.000816
Nucleus 0.144640 0.138157 0.479804 0.296308 0.161796 0.105302 0.697334 0.234069 0.160369 0.121703 0.494525 0.260186
Peroxisomes 0.009189 0.016366 0.000322 0.001486 0.004766 0.024532 0.000577 0.001720 0.005134 0.020456 0.000339 0.001622
Vacuole 0.049145 0.065482 0.021608 0.120011 0.039788 0.053595 0.047980 0.080691 0.040567 0.059529 0.023393 0.097191
Vacuole Periphery 0.001902 0.001651 0.000211 0.006105 0.000906 0.001946 0.000422 0.003705 0.000989 0.001799 0.000226 0.004712

Localization Changes (T-score)

R1 R2 R1 & R2
UBP2_WT UBP14_WT UBP2UBP14_WT UBP2UBP14_UBP2 UBP2UBP14_UBP14 UBP2_WT UBP14_WT UBP2UBP14_WT UBP2UBP14_UBP2 UBP2UBP14_UBP14 UBP2_WT UBP14_WT UBP2UBP14_WT UBP2UBP14_UBP2 UBP2UBP14_UBP14
Actin -1.71 -1.66 -6.00 0.27 -5.56 -4.59 -2.47 -3.32 1.06 -0.70 -3.09 -1.63 -5.55 0.73 -5.07
Bud Neck -4.39 3.21 2.36 15.81 -5.43 -14.20 10.95 3.28 16.23 -8.08 -17.03 10.44 4.86 22.36 -8.47
Bud Site -8.48 -2.16 -6.05 -0.64 -4.89 -9.71 1.82 -8.47 -3.28 -8.83 -12.26 -1.19 -10.12 -3.05 -8.74
Cell Periphery 1.36 3.25 -0.31 -1.24 -2.10 -5.43 -3.36 -1.85 0.14 -0.54 -4.52 -2.79 -2.72 -0.57 -1.95
Cytoplasm -1.74 -3.25 0.68 5.04 8.03 16.34 19.80 3.52 -11.83 -17.54 14.99 8.83 9.04 -5.78 -0.76
Cytoplasmic Foci 4.21 17.45 17.47 44.07 0.38 -9.59 29.79 38.96 49.66 0.23 -6.31 43.70 43.11 65.71 -2.47
Eisosomes 3.92 10.98 9.09 9.00 -12.71 -8.64 2.74 9.81 18.58 4.30 -5.46 12.99 10.71 20.09 -8.93
Endoplasmic Reticulum -0.84 -5.34 -10.37 -10.29 -8.80 -0.97 -6.66 -8.73 -4.86 5.49 -0.93 -8.84 -12.47 -11.46 -6.75
Endosome 2.51 5.11 4.66 11.75 -4.85 -8.53 3.02 5.13 11.89 -0.34 -6.87 12.50 7.78 16.32 -6.37
Golgi -5.95 3.99 -1.18 3.21 -2.91 -6.76 -0.04 -0.33 6.03 -0.07 -7.37 4.04 -0.47 6.62 -4.28
Lipid Particles 3.51 5.00 4.82 8.30 -5.90 -2.93 3.57 11.04 15.74 3.98 0.59 11.68 11.61 17.18 -0.89
Mitochondria -2.41 1.89 0.95 7.22 -3.15 -10.21 5.38 2.35 11.47 -4.97 -11.80 5.64 1.79 13.71 -5.01
Mitotic Spindle -5.69 -3.47 -7.90 -4.70 -7.25 -3.75 -0.51 -8.34 -5.91 -3.83 -4.59 0.66 -10.44 -7.61 -11.14
None 1.17 -2.67 -0.42 -3.64 3.77 3.08 2.24 -0.34 -4.03 -2.98 3.19 -3.16 -0.29 -5.33 3.51
Nuclear Periphery 1.13 0.31 -3.07 -18.24 -14.67 1.27 -8.46 -13.41 -14.88 3.32 1.69 -6.78 -16.59 -23.22 -14.86
Nuclear Periphery Foci 1.66 -0.29 -6.88 -7.75 -7.06 2.93 -3.72 -1.04 -4.60 3.36 3.29 0.15 -5.73 -8.93 -6.60
Nucleolus -0.43 3.26 2.91 4.71 -0.58 1.93 3.69 3.68 3.38 -0.07 1.64 4.12 3.91 5.69 -0.69
Nucleus 0.52 -23.72 -12.19 -22.32 16.19 11.13 -22.28 -16.60 -25.27 16.72 8.54 -44.83 -23.38 -32.99 24.70
Peroxisomes -3.22 4.51 4.32 15.91 -1.82 -13.76 8.42 6.89 17.31 -3.00 -15.80 9.78 8.40 23.23 -3.95
Vacuole -2.52 2.76 -17.94 -21.47 -27.24 -5.63 -4.02 -19.66 -16.23 -2.96 -9.44 3.40 -30.61 -26.02 -31.67
Vacuole Periphery 0.49 3.55 -0.38 -0.76 -2.67 -4.89 3.41 -2.27 -0.37 -3.32 -5.29 7.18 -2.61 -0.85 -4.42
Protein Complexes26S Proteasome complex37S mitochondrial small ribosomal subunit54S mitochondrial large ribosomal subunit60S cytosolic large ribosomal subunitAar2-U5 snRNPAnaphase-Promoting Complex variant 1Anaphase-Promoting Complex variant 2Anaphase-Promoting Complex variant 3Anaphase-Promoting Complex variant 4Arp2/3 complexATG1 kinase complexBLOC-1 complexCcr4-Not complexCentral kinetochore CTF19 complexCleavage and polyadenylation specificity factorcomplexCMG helicase complexCMG-Pol epsilon complexCOMPASS complexCOP9 signalosome COPI vesicle coat complexCoQ6 biosynthesis complexCore mediator complexCORVET complexCTF18-RFC complexCURI complex variant 1CURI complex variant 2CURI complex variant 3Cytoplasmic exosome complex, DIS3 variantDASH complexDNA-directed RNA Polymerase I complexDNA-directed RNA polymerase II complexDNA-directed RNA polymerase III complexDNA replication factor C complexEGO complexELG1-RFC complex Elongator holoenzyme complexEndoplasmic Reticulum Membrane ComplexEukaryotic translation initiation factor 2BcomplexEukaryotic translation initiation factor 3core complexExocystExomer complexFAR complexGeneral transcription factor complex TFIIDGeneral transcription factor complex TFIIHGET4-GET5 transmembrane domain recognition complexGID ubiquitin ligase complexGin4 complexGolgi transport complexGSE complexHMC complexHOPS complexINO80 chromatin remodeling complexLSM1-7 complexLsm1-7-Pat1 complexLSM2-7 complexLSM2-8 complexMCM complexMICOS complexMitochondrial electron transport complex IIIMitochondrial inner membrane pre-sequence translocasecomplexMitochondrial outer membrane translocase holocomplexMitochondrial proton-transporting ATP synthase complexMitochondrial pyruvate dehydrogenase complexNineTeen complexNOP8 60s ribosome pre-assembly complexNuA3 histone acetyltransferase complexNuA4 histone acetyltransferase complexNuclear condensin complexNuclear/nucleolar exosome complex, DIS3-RRP6 variantNuclear pore complexNucleolar ribonuclease MRP complexNucleolar ribonuclease P complexOligosaccharyl transferase complex variant 1Oligosaccharyl transferase complex variant 2PAF1 complexPAS complexPhosphatidylinositol 3-kinase complex IPolarisomePrefoldin complexPRP19-associated complexRad17 RFC-like complexRetromer complexRPD3L histone deacetylase complexRPD3S histone deacetylase complexRQC complexRSC complex variant RSC1RSC complex variant RSC2SAGA complexSCF-Met30 ubiquitin ligase complexSCF-Ufo1 ubiquitin ligase complexSEA complexSeptin complexSET3C histone deacetylase complexSignal recognition particleSLIK (SAGA-like) complexSmall ribosomal subunit processome, variant1Small ribosomal subunit processome, variant2Small ribosomal subunit processome, variant3SMC5-SMC6 SUMO ligase complexSm complexSpliceosomal commitment complexSPOTS complexSWI/SNF chromatin remodelling complexSwr1 chromatin remodelling complexTHO complexTranscription factor TFIIIC complexTranslocon complexTRAPPIII protein complexTRAPPII protein complexTRAPPI protein complexTREX complexU1 snRNPU2 snRNPU4 snRNPU4/U6 snRNPU4/U6.U5 tri-snRNP complexU5 snRNPU6 snRNP complexUTP-A complexUTP-B complexUTP-C complex variant 1UTP-C complex variant 2UTP-C complex variant 3Vacuolar proton translocating ATPase complex,Golgi variantVacuolar proton translocating ATPase complex,vacuole variantCellular Componentsactinbud neckcell peripherycytoplasmendosomeERGolgimitochondrionmixednuclear peripherynucleolusnucleusperoxisomespindle polevacuolar membranevacuole
Standard name
Human Ortholog
Description Small plasma membrane protein; confers resistance to amphotericin B and is a potential target of this common antifungal drug; related to a family of plant polypeptides that are overexpressed under high salt concentration or low temperature; not essential for viability; deletion causes hyperpolarization of the plasma membrane potential
Localization
Cell Percentages cytoplasm (24%)
Cell Cycle Regulation No
Subcompartmental Group cytoplasm-9

Pmp3

Pmp3


Nearest neighbours ( genes)

correlation threshold

0.6

1.0

0.80


Biological Process (Gene Ontology)

Molecular Function (Gene Ontology)

Cellular Component (Gene Ontology)


Endocytosis
Temp Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Vph1-GFP)
37℃
RT
Cell Cycle Omics

CYCLoPs (Pmp3-GFP)
Gene / Allele Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Sac6-tdTomato)
Gene Images
Gene Images
Images are not yet available
Images are not yet available