Standard name | |
---|---|
Human Ortholog | |
Description | Protein involved in nucleotide excision repair (NER); homologous to RAD4 |
ensLOC | DeepLoc | |||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Localization | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | WT1 | WT2 | WT3 | AF100 | AF140 | AF180 |
Cortical Patches | 0 | 0 | 2 | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 2 | 2 |
Bud | 0 | 0 | 0 | 1 | 3 | 2 | 8 | 3 | 9 | 8 | 13 | 23 | 5 | 1 | 1 | 0 | 0 | 0 | 1 | 3 | 4 | 6 | 13 | 11 |
Bud Neck | 0 | 0 | 18 | 10 | 21 | 6 | 20 | 26 | 5 | 10 | 5 | 6 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 3 | 6 | 14 | 14 |
Bud Site | 0 | 0 | 0 | 1 | 2 | 4 | 3 | 3 | 5 | 6 | 9 | 11 | 2 | 2 | 1 | 0 | 0 | 0 | – | – | – | – | – | – |
Cell Periphery | 0 | 0 | 4 | 0 | 1 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 3 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 21 | 33 | 109 | 114 | 166 | 193 | 262 | 217 | 163 | 217 | 204 | 193 | 70 | 124 | 168 | 144 | 81 | 83 | 17 | 26 | 56 | 36 | 57 | 64 |
Endoplasmic Reticulum | 3 | 1 | 3 | 0 | 1 | 1 | 2 | 0 | 1 | 0 | 0 | 0 | 1 | 2 | 1 | 19 | 5 | 13 | 1 | 1 | 1 | 3 | 4 | 3 |
Endosome | 0 | 0 | 0 | 5 | 2 | 5 | 5 | 1 | 1 | 3 | 1 | 3 | 15 | 30 | 27 | 66 | 22 | 27 | 8 | 4 | 3 | 6 | 33 | 41 |
Golgi | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 0 | 0 | 1 | 2 | 1 | 1 |
Mitochondria | 69 | 70 | 2 | 58 | 45 | 186 | 283 | 136 | 362 | 311 | 359 | 295 | 133 | 60 | 67 | 26 | 6 | 20 | 8 | 5 | 18 | 20 | 59 | 61 |
Nucleus | 51 | 63 | 116 | 103 | 164 | 172 | 168 | 116 | 119 | 133 | 92 | 103 | 212 | 224 | 229 | 66 | 50 | 48 | 62 | 89 | 112 | 100 | 90 | 64 |
Nuclear Periphery | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 3 | 1 | 0 | 2 | 4 | 3 |
Nucleolus | 0 | 0 | 0 | 0 | 1 | 0 | 1 | 1 | 1 | 2 | 4 | 5 | 3 | 8 | 6 | 0 | 0 | 1 | 7 | 8 | 10 | 12 | 22 | 18 |
Peroxisomes | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 2 | 2 | 5 | 29 | 19 | 10 | 42 | 31 | 11 | 19 | 14 | 27 | 3 | 17 | 7 | 4 | 6 | 1 | 18 | 12 | 21 | 21 | 57 | 67 |
Vac/Vac Membrane | 46 | 26 | 11 | 10 | 36 | 34 | 27 | 59 | 19 | 24 | 30 | 30 | 54 | 66 | 135 | 163 | 99 | 94 | 59 | 55 | 153 | 166 | 286 | 266 |
Unique Cell Count | 149 | 165 | 258 | 292 | 421 | 529 | 687 | 523 | 560 | 605 | 605 | 570 | 417 | 486 | 583 | 395 | 236 | 238 | 196 | 214 | 404 | 397 | 671 | 646 |
Labelled Cell Count | 193 | 195 | 270 | 331 | 461 | 614 | 824 | 593 | 697 | 733 | 732 | 696 | 498 | 534 | 643 | 491 | 269 | 292 | 196 | 214 | 404 | 397 | 671 | 646 |
Screen | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | AF100 | AF140 | AF180 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Mean Cell GFP Intensity (1e-4) | 4.0 | 3.7 | 4.8 | 4.3 | 4.9 | 3.8 | 4.0 | 4.3 | 3.5 | 3.5 | 3.4 | 3.7 | 4.1 | 4.2 | 4.2 | 5.9 | 6.2 | 6.0 | 3.9 | 3.8 | 4.2 |
Std Deviation (1e-4) | 0.5 | 0.6 | 0.7 | 1.1 | 1.1 | 0.9 | 0.9 | 1.1 | 0.9 | 0.9 | 0.9 | 0.6 | 0.7 | 1.0 | 0.9 | 1.3 | 1.3 | 1.2 | 0.9 | 0.8 | 1.0 |
Intensity Change (Log2) | – | – | – | -0.15 | 0.03 | -0.33 | -0.27 | -0.17 | -0.47 | -0.45 | -0.49 | -0.37 | -0.24 | -0.19 | -0.19 | 0.3 | 0.35 | 0.31 | -0.3 | -0.36 | -0.19 |
Localization | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Actin | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Bud | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Bud Neck | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Bud Site | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Cell Periphery | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Cyto | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Endoplasmic Reticulum | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Endosome | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Golgi | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Mitochondria | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Nuclear Periphery | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Nuc | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Nucleolus | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Peroxisomes | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
SpindlePole | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Vac | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Cortical Patches | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Cytoplasm | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Nucleus | – | – | – | – | – | – | – | – | – | – | – | – | 0 | 0 | 0 |
Vacuole | – | – | – | – | – | – | – | – | – | – | – | – | 10.5 | 10.1 | 9.6 |
R1 | R2 | R3 | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Concentration | -0.9214 | -0.8058 | -0.8237 | -1.2288 | -1.4098 | -1.0024 | -0.8436 | -1.0258 | -0.9946 | -0.9134 | -1.1856 | -1.0905 | -0.8856 | -0.7964 | -1.0731 | -0.3394 | -0.9997 | -0.962 |
Actin | 0.0077 | 0.0064 | 0.0136 | 0.0021 | 0.0091 | 0.0119 | 0.0145 | 0.0002 | 0.0041 | 0.0063 | 0.0027 | 0.0012 | 0.0173 | 0.0003 | 0.014 | 0.0547 | 0.0178 | 0.0047 |
Bud | 0.0006 | 0.0077 | 0.0009 | 0.0001 | 0.0003 | 0.001 | 0.001 | 0.0003 | 0.0002 | 0.0005 | 0.0005 | 0.0002 | 0.0006 | 0.0002 | 0.0003 | 0.0008 | 0.0028 | 0.0003 |
Bud Neck | 0.0167 | 0.0011 | 0.0071 | 0.0026 | 0.0023 | 0.0089 | 0.0038 | 0.0021 | 0.0014 | 0.0256 | 0.0014 | 0.0078 | 0.0021 | 0.003 | 0.0021 | 0.004 | 0.0049 | 0.0093 |
Bud Periphery | 0.001 | 0.0018 | 0.0021 | 0.0002 | 0.0004 | 0.0017 | 0.0019 | 0.0004 | 0.0002 | 0.0013 | 0.0008 | 0.0004 | 0.0008 | 0.0002 | 0.0005 | 0.001 | 0.0052 | 0.0004 |
Bud Site | 0.0095 | 0.005 | 0.0058 | 0.0009 | 0.0006 | 0.0021 | 0.0056 | 0.0074 | 0.0019 | 0.0048 | 0.0009 | 0.0018 | 0.0021 | 0.0051 | 0.0032 | 0.0088 | 0.0023 | 0.0008 |
Cell Periphery | 0.0006 | 0.0003 | 0.0007 | 0.0002 | 0.0001 | 0.0002 | 0.0004 | 0.0003 | 0.0001 | 0.0002 | 0.0001 | 0.0002 | 0.0002 | 0.0004 | 0.0003 | 0.0004 | 0.0004 | 0.0001 |
Cytoplasm | 0.0986 | 0.1679 | 0.1243 | 0.0594 | 0.1118 | 0.1245 | 0.106 | 0.1529 | 0.1413 | 0.1109 | 0.1311 | 0.1243 | 0.1422 | 0.2106 | 0.1956 | 0.1158 | 0.1205 | 0.1676 |
Cytoplasmic Foci | 0.0407 | 0.0163 | 0.0212 | 0.0131 | 0.0178 | 0.0103 | 0.045 | 0.0118 | 0.0188 | 0.0297 | 0.0349 | 0.0118 | 0.0258 | 0.0096 | 0.0156 | 0.0282 | 0.0161 | 0.0121 |
Eisosomes | 0.0003 | 0.0003 | 0.0003 | 0.0001 | 0.0001 | 0.0002 | 0.0003 | 0.0001 | 0.0001 | 0.0002 | 0.0001 | 0.0001 | 0.0002 | 0.0001 | 0.0004 | 0.0003 | 0.0005 | 0.0001 |
Endoplasmic Reticulum | 0.0113 | 0.0069 | 0.0086 | 0.0088 | 0.0055 | 0.0058 | 0.0085 | 0.0052 | 0.0083 | 0.0067 | 0.0034 | 0.0044 | 0.0084 | 0.011 | 0.0133 | 0.0126 | 0.0037 | 0.0043 |
Endosome | 0.0217 | 0.0148 | 0.0256 | 0.0132 | 0.026 | 0.0107 | 0.0541 | 0.0151 | 0.0317 | 0.03 | 0.0511 | 0.0187 | 0.0355 | 0.0133 | 0.0234 | 0.0518 | 0.0248 | 0.0199 |
Golgi | 0.002 | 0.0016 | 0.0075 | 0.0013 | 0.0029 | 0.0032 | 0.0124 | 0.0004 | 0.0053 | 0.0137 | 0.0118 | 0.0013 | 0.009 | 0.0005 | 0.0042 | 0.0181 | 0.0287 | 0.0059 |
Lipid Particles | 0.0223 | 0.0063 | 0.0113 | 0.0106 | 0.0053 | 0.0024 | 0.0383 | 0.0038 | 0.0132 | 0.0073 | 0.0597 | 0.0096 | 0.0301 | 0.0051 | 0.0168 | 0.0233 | 0.0264 | 0.0095 |
Mitochondria | 0.0037 | 0.0036 | 0.0047 | 0.002 | 0.0027 | 0.002 | 0.0183 | 0.0019 | 0.0051 | 0.0187 | 0.0129 | 0.0021 | 0.008 | 0.0009 | 0.0155 | 0.0224 | 0.0359 | 0.0021 |
None | 0.3773 | 0.3841 | 0.3732 | 0.2547 | 0.2382 | 0.2154 | 0.2146 | 0.3514 | 0.274 | 0.304 | 0.2059 | 0.1282 | 0.2301 | 0.274 | 0.2075 | 0.1765 | 0.1688 | 0.1206 |
Nuclear Periphery | 0.0253 | 0.0267 | 0.0358 | 0.0341 | 0.024 | 0.0252 | 0.0528 | 0.0262 | 0.0457 | 0.0455 | 0.0259 | 0.022 | 0.0305 | 0.032 | 0.0474 | 0.0521 | 0.0138 | 0.0249 |
Nucleolus | 0.0101 | 0.013 | 0.0172 | 0.0291 | 0.0239 | 0.0147 | 0.0264 | 0.0298 | 0.0427 | 0.008 | 0.0115 | 0.0427 | 0.01 | 0.0381 | 0.0163 | 0.0068 | 0.0234 | 0.0159 |
Nucleus | 0.2606 | 0.2801 | 0.2609 | 0.4951 | 0.4373 | 0.4926 | 0.3213 | 0.331 | 0.3336 | 0.3207 | 0.2761 | 0.535 | 0.3789 | 0.3436 | 0.3743 | 0.3553 | 0.4341 | 0.5341 |
Peroxisomes | 0.0052 | 0.0009 | 0.0074 | 0.0033 | 0.0039 | 0.0006 | 0.02 | 0.0009 | 0.0037 | 0.0065 | 0.011 | 0.0045 | 0.0242 | 0.0003 | 0.0041 | 0.0229 | 0.0099 | 0.0024 |
Punctate Nuclear | 0.0663 | 0.0462 | 0.0589 | 0.061 | 0.0814 | 0.0623 | 0.0403 | 0.0401 | 0.0571 | 0.0479 | 0.1531 | 0.0775 | 0.0344 | 0.0411 | 0.0334 | 0.0296 | 0.0511 | 0.0601 |
Vacuole | 0.0152 | 0.008 | 0.0114 | 0.0069 | 0.0049 | 0.0032 | 0.01 | 0.0174 | 0.0096 | 0.0082 | 0.0035 | 0.0055 | 0.0079 | 0.0096 | 0.0098 | 0.0119 | 0.0065 | 0.004 |
Vacuole Periphery | 0.0032 | 0.001 | 0.0016 | 0.0011 | 0.0015 | 0.001 | 0.0046 | 0.0013 | 0.0017 | 0.0035 | 0.0018 | 0.0008 | 0.0015 | 0.0009 | 0.002 | 0.0025 | 0.0025 | 0.0009 |
R1 | R2 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Gene Expression | 3.4498 | 6.6423 | 4.2247 | 6.0318 | 5.1609 | 8.4871 | 8.5149 | 7.6087 | 5.4082 | 8.2393 |
Translational Efficiency | – | – | – | – | – | – | – | – | – | – |
Dataset | Hit |
---|---|
Protein Concentration | ✘ |
Protein Localization | ✘ |
Gene Expression | ✘ |
Translational Efficiency | – |
Temp | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Vph1-GFP) |
---|---|---|---|---|
37℃ | ||||
RT |
Gene / Allele | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Sac6-tdTomato) |
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Gene | Images |
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Gene | Images |
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