Standard name
Human Ortholog
Description Protein required for assembly of the cytochrome bc(1) complex; acts as a chaperone for Rip1p and facilitates its insertion into the complex at a late stage of assembly; localized to the mitochondrial matrix; null mutant exhibits a respiratory growth defect and reduced mitochondrial zinc levels, which is characteristic of mutations affecting bc(1) complex assembly; member of the LYR protein family; human LYRM7 is a functional ortholog

Micrographs

ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.05
Bud 0 0 0.07 0 0 0 0.05 0.06 0.06 0 0.06 0 0 0 0 0 0 0 0 0
Bud Neck 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Site 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cell Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cytoplasm 0.36 0.16 0.23 0.18 0.22 0.14 0.15 0.12 0.08 0.16 0.1 0.49 0.49 0.41 0.07 0 0 0 0 0
Endoplasmic Reticulum 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Endosome 0.05 0.13 0 0 0.11 0 0 0 0 0 0 0.13 0.13 0.19 0.07 0.11 0.07 0.05 0.09 0.08
Golgi 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Mitochondria 0.55 0.6 0.79 0.83 0.65 0.89 0.87 0.92 0.92 0.88 0.93 0.25 0.31 0.2 0.65 0.65 0.68 0.71 0.6 0.59
Nucleus 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nuclear Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nucleolus 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Peroxisomes 0 0 0 0 0.09 0 0 0 0 0 0 0 0.05 0.1 0 0 0 0 0.05 0
SpindlePole 0 0 0.08 0 0.08 0 0.06 0.06 0 0 0 0 0 0 0 0 0 0 0 0
Vac/Vac Membrane 0.12 0.19 0 0 0.05 0 0 0 0 0 0 0.1 0.05 0.08 0.06 0 0 0 0 0.05
ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 2 3 1 0 0 0 0 0 0 0 0 1 5 0 12 15 8 6 11 22
Bud 16 4 19 10 10 9 28 22 24 9 16 8 5 8 10 6 2 3 4 8
Bud Neck 0 0 2 0 0 0 3 2 1 0 0 2 0 0 9 4 1 5 7 7
Bud Site 0 0 3 4 1 5 7 10 5 2 5 0 0 0
Cell Periphery 2 11 2 2 1 0 1 3 1 5 3 5 7 18 1 0 0 1 0 1
Cytoplasm 180 43 59 46 69 46 80 46 33 43 29 235 171 206 42 5 12 12 13 19
Endoplasmic Reticulum 14 9 3 2 4 4 1 1 2 1 2 10 11 5 6 2 3 3 1 6
Endosome 24 34 0 2 35 3 0 1 0 0 0 65 44 97 43 39 19 16 30 37
Golgi 0 2 0 0 0 1 0 0 0 0 0 6 0 12 3 11 3 5 9 11
Mitochondria 270 163 203 211 205 288 480 364 367 229 268 122 110 102 390 234 192 225 195 265
Nucleus 3 3 1 2 2 0 10 4 1 3 4 1 0 1 1 0 0 0 1 2
Nuclear Periphery 0 1 0 2 2 2 6 7 7 3 2 0 0 1 3 3 1 4 1 4
Nucleolus 1 1 0 1 3 1 6 3 4 1 2 2 0 0 2 0 0 1 2 3
Peroxisomes 5 7 1 6 30 5 4 0 3 1 2 20 18 51 6 8 9 6 15 14
SpindlePole 18 8 20 6 26 10 31 22 18 8 7 20 6 21 16 5 8 6 9 12
Vac/Vac Membrane 60 52 7 5 16 6 12 11 5 2 5 47 18 40 38 12 7 10 14 21
Unique Cell Count 495 270 257 253 317 324 550 395 400 261 287 484 350 498 601 359 283 318 324 448
Labelled Cell Count 595 341 321 299 404 380 669 496 471 307 345 544 395 562 601 359 283 318 324 448


Mitochondria

(Huh et al. Nature 2003 425:686)
Screen WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 AF100 AF140 AF180
Mean Cell GFP Intensity (1e-4) 4.0 5.0 3.6 3.7 4.1 3.4 3.5 3.0 3.1 3.2 3.2 4.8 5.1 5.1 5.1 5.4 5.3
Std Deviation (1e-4) 0.5 0.9 0.9 2.0 1.7 1.5 1.4 1.2 0.9 1.0 1.4 1.1 1.1 1.3 1.4 1.5 1.9
Intensity Change (Log2) 0.02 0.2 -0.07 -0.05 -0.25 -0.19 -0.17 -0.17 0.42 0.49 0.51 0.51 0.58 0.56


Localization RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3
Cortical Patches 0 0 0 0 0 0 0 0 0 0 0
Bud 0 0 0 0 0 0 0 0 0 -3.7 -4.1
Bud Neck 0 0 0 0 0 0 0 0 0 0 0
Bud Site 0 0 0 0 0 0 0 0 0 0 0
Cell Periphery 0 0 0 0 0 0 0 0 0 0 2.3
Cytoplasm -1.3 -0.3 -2.7 -2.9 -3.8 -5.3 -1.9 -4.1 6.8 6.5 5.0
Endoplasmic Reticulum 0 0 0 0 0 0 0 0 0 1.6 0
Endosome 0 0 0 0 0 0 0 0 0 5.9 7.6
Golgi 0 0 0 0 0 0 0 0 0 0 0
Mitochondria 0 0 0 0 0 0 0 0 0 -11.6 -15.5
Nucleus 0 0 0 0 0 0 0 0 0 0 0
Nuclear Periphery 0 0 0 0 0 0 0 0 0 0 0
Nucleolus 0 0 0 0 0 0 0 0 0 0 0
Peroxisomes 0 0 0 0 0 0 0 0 0 3.3 5.1
SpindlePole 0 0 0 0 0 0 0 0 0 -3.6 -2.0
Vacuole -0.6 1.4 -0.7 -0.5 0 0 0 -0.8 3.5 1.5 2.9

Images

Circle plot not available

Protein Concentration and Protein Localization Data

R1 R2 R3
G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase
Concentration 0.3919 0.6277 0.5593 0.8562 0.1066 0.7456 -0.0106 0.1147 0.2323 1.0857 0.6773 0.3325 1.5072 1.5885 1.6732 1.6708 1.5839 1.5996
Actin 0.0056 0.006 0.0077 0.0103 0.003 0.0091 0.0054 0.0118 0.0064 0.0612 0.0483 0.0119 0.0041 0.0082 0.0091 0.0454 0.0052 0.0073
Bud 0.0021 0.0052 0.0031 0.0067 0.0014 0.0011 0.0021 0.0064 0.0041 0.0025 0.0101 0.0029 0.0022 0.0046 0.0071 0.0051 0.0025 0.0017
Bud Neck 0.005 0.0022 0.0034 0.0043 0.0032 0.004 0.0025 0.0013 0.0033 0.0049 0.0038 0.0072 0.0048 0.0021 0.0019 0.003 0.0008 0.0062
Bud Periphery 0.0046 0.0079 0.0065 0.0155 0.0025 0.0029 0.0049 0.0131 0.0146 0.0078 0.0172 0.0099 0.0062 0.0112 0.0088 0.0156 0.0117 0.0065
Bud Site 0.0084 0.0488 0.0138 0.0172 0.0026 0.0013 0.0076 0.0311 0.0145 0.0051 0.01 0.0043 0.0096 0.0269 0.0099 0.0045 0.0026 0.0018
Cell Periphery 0.0009 0.0011 0.0021 0.0011 0.0003 0.0005 0.0016 0.0014 0.0015 0.0009 0.0006 0.001 0.0024 0.0018 0.0022 0.0007 0.0005 0.0011
Cytoplasm 0.0341 0.0682 0.0406 0.0413 0.0604 0.051 0.0319 0.0423 0.0579 0.0295 0.0465 0.0548 0.0564 0.0787 0.0667 0.0643 0.0487 0.0643
Cytoplasmic Foci 0.1108 0.1277 0.1065 0.0999 0.1505 0.1217 0.119 0.1111 0.1173 0.0968 0.1603 0.135 0.12 0.1222 0.1113 0.096 0.099 0.1264
Eisosomes 0.0004 0.0004 0.0008 0.0004 0.0001 0.0003 0.0011 0.001 0.0009 0.0016 0.0004 0.0005 0.0006 0.0004 0.0007 0.0006 0.0006 0.0005
Endoplasmic Reticulum 0.0035 0.0057 0.0032 0.0049 0.0044 0.0025 0.0076 0.0024 0.0063 0.0052 0.0034 0.0034 0.0072 0.0027 0.0035 0.0043 0.0022 0.0035
Endosome 0.2099 0.1345 0.1297 0.1381 0.1906 0.1305 0.1335 0.1816 0.0892 0.1226 0.1015 0.0996 0.1581 0.1449 0.1031 0.0847 0.1291 0.1048
Golgi 0.0597 0.0524 0.0416 0.0423 0.0586 0.0458 0.0419 0.0582 0.0308 0.0413 0.0476 0.0358 0.0364 0.0523 0.0398 0.0403 0.0415 0.0356
Lipid Particles 0.0539 0.0283 0.036 0.0098 0.0168 0.0401 0.0482 0.0193 0.0213 0.0586 0.0216 0.0257 0.0369 0.0161 0.0112 0.0084 0.0144 0.0237
Mitochondria 0.344 0.3193 0.4301 0.4573 0.3699 0.4018 0.3156 0.3428 0.3729 0.2227 0.386 0.3398 0.3344 0.3417 0.3795 0.3533 0.2791 0.3591
None 0.0727 0.1259 0.077 0.0694 0.0666 0.0775 0.1773 0.1119 0.1605 0.2155 0.0383 0.1568 0.1409 0.1094 0.1753 0.2067 0.2437 0.1652
Nuclear Periphery 0.0033 0.0039 0.0063 0.0082 0.0007 0.0033 0.008 0.001 0.0087 0.0077 0.0053 0.0046 0.0025 0.0012 0.0014 0.0053 0.0017 0.0026
Nucleolus 0.0023 0.002 0.0027 0.0007 0.0005 0.0017 0.0029 0.0014 0.0027 0.0023 0.002 0.0019 0.0093 0.002 0.001 0.0007 0.0013 0.0014
Nucleus 0.0025 0.0031 0.0033 0.0017 0.0008 0.0028 0.0045 0.0014 0.0068 0.0039 0.0035 0.003 0.0031 0.0023 0.002 0.0037 0.0019 0.0023
Peroxisomes 0.0498 0.0408 0.065 0.0544 0.0518 0.0853 0.0576 0.044 0.057 0.0849 0.0714 0.0842 0.0313 0.048 0.0505 0.041 0.0861 0.0689
Punctate Nuclear 0.0021 0.0023 0.0024 0.0011 0.0017 0.0052 0.0073 0.0013 0.0108 0.0077 0.0127 0.0048 0.003 0.0015 0.0014 0.0019 0.002 0.0035
Vacuole 0.0169 0.0104 0.0136 0.0092 0.0086 0.0074 0.0142 0.0107 0.0086 0.0112 0.0068 0.009 0.0231 0.0171 0.0098 0.0101 0.0176 0.0093
Vacuole Periphery 0.0074 0.0039 0.0048 0.0065 0.005 0.0043 0.0053 0.0047 0.0037 0.0061 0.0029 0.0037 0.0074 0.0047 0.0039 0.0043 0.0077 0.0043

Sequencing Data

R1 R2
G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Post-START S/G2 Metaphase Anaphase Telophase
Gene Expression 13.3476 21.2124 15.7405 19.5864 17.3058 11.858 21.4478 30.7612 29.7528 21.1311
Translational Efficiency 1.9442 1.3179 2.0798 2.3918 2.3175 4.3369 2.3971 2.0594 2.3338 2.7861

Hit Data

Dataset Hit
Protein Concentration
Protein Localization
Gene Expression
Translational Efficiency

Micrographs

Cell Count

R1 R2 R1 & R2
WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14
1669 1723 1250 260 1475 1865 921 1664 3144 3588 2171 1924

Protein Abundance

R1 R2 R1 & R2
WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14
Mean 586.84 711.75 719.58 814.08 616.07 731.49 728.80 786.92 600.55 722.01 723.49 790.59
Standard Deviation 66.36 95.01 92.39 104.11 67.58 95.01 92.38 113.08 68.51 95.52 92.50 112.29
Intensity Change Log 2 0.278403 0.294188 0.472203 0.247744 0.242429 0.353123 0.262783 0.267911 0.412445

Localization Score (DeepLoc)

R1 R2 R1 & R2
WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14
Actin 0.000381 0.001010 0.001459 0.009953 0.000482 0.000578 0.001161 0.006200 0.000428 0.000785 0.001333 0.006707
Bud Neck 0.043722 0.024992 0.024762 0.026275 0.030794 0.032649 0.042577 0.040609 0.037657 0.028972 0.032319 0.038672
Bud Site 0.013800 0.027907 0.045555 0.077930 0.015046 0.021627 0.047814 0.095465 0.014384 0.024643 0.046513 0.093095
Cell Periphery 0.000323 0.000245 0.000194 0.000233 0.000415 0.000286 0.000226 0.000212 0.000366 0.000266 0.000207 0.000215
Cytoplasm 0.076490 0.042418 0.227329* 0.238673* 0.050620 0.048303 0.305649* 0.257027* 0.064353 0.045477 0.260555* 0.254547*
Cytoplasmic Foci 0.216611* 0.160659 0.188353* 0.173238 0.179494 0.160168 0.179608 0.127063 0.199198* 0.160404 0.184643* 0.133303
Eisosomes 0.000259 0.000134 0.000112 0.000200 0.000221 0.000158 0.000118 0.000143 0.000241 0.000146 0.000114 0.000150
Endoplasmic Reticulum 0.001085 0.000532 0.004017 0.002860 0.001222 0.000705 0.001507 0.001955 0.001149 0.000622 0.002952 0.002077
Endosome 0.070412 0.083236 0.052464 0.025613 0.091596 0.100386 0.034865 0.030779 0.080351 0.092151 0.044998 0.030081
Golgi 0.053647 0.109072 0.030320 0.010496 0.066151 0.101076 0.015597 0.015975 0.059513 0.104916 0.024074 0.015235
Lipid Particles 0.027548 0.006464 0.007508 0.006087 0.022327 0.014055 0.006358 0.003525 0.025099 0.010410 0.007020 0.003871
Mitochondria 0.366143* 0.389024* 0.078926 0.019777 0.410137* 0.387098* 0.050465 0.038824 0.386782* 0.388022* 0.066852 0.036250
Mitotic Spindle 0.004382 0.034281 0.047669 0.054376 0.007106 0.019818 0.033845 0.070929 0.005660 0.026763 0.041805 0.068692
None 0.002272 0.001484 0.003803 0.001126 0.001823 0.001037 0.001499 0.001570 0.002062 0.001252 0.002825 0.001510
Nuclear Periphery 0.000545 0.000239 0.001226 0.000517 0.000758 0.000502 0.000905 0.001111 0.000645 0.000376 0.001090 0.001031
Nuclear Periphery Foci 0.000239 0.000241 0.002197 0.001870 0.000427 0.000336 0.001228 0.000755 0.000327 0.000290 0.001786 0.000906
Nucleolus 0.003003 0.002228 0.007572 0.000698 0.002689 0.001474 0.002257 0.001864 0.002856 0.001836 0.005317 0.001707
Nucleus 0.022493 0.007789 0.120808 0.092040 0.015806 0.008053 0.123802 0.085770 0.019356 0.007926 0.122078 0.086617
Peroxisomes 0.058262 0.063638 0.048198 0.115889* 0.056245 0.054735 0.059010 0.083327 0.057315 0.059010 0.052785 0.087727
Vacuole 0.027316 0.030633 0.090044 0.141211 0.032140 0.032661 0.086762 0.130525 0.029579 0.031688 0.088652 0.131969
Vacuole Periphery 0.011067 0.013772 0.017485 0.000939 0.014500 0.014297 0.004747 0.006373 0.012678 0.014045 0.012081 0.005639

Localization Changes (T-score)

R1 R2 R1 & R2
UBP2_WT UBP14_WT UBP2UBP14_WT UBP2UBP14_UBP2 UBP2UBP14_UBP14 UBP2_WT UBP14_WT UBP2UBP14_WT UBP2UBP14_UBP2 UBP2UBP14_UBP14 UBP2_WT UBP14_WT UBP2UBP14_WT UBP2UBP14_UBP2 UBP2UBP14_UBP14
Actin -4.50 -8.94 -3.21 -2.94 -2.73 -0.82 -5.06 -6.94 -6.75 -5.89 -3.97 -10.08 -7.70 -7.13 -6.29
Bud Neck 5.91 6.12 3.88 0.30 0.23 -0.61 -3.05 -2.19 -1.52 1.41 3.84 2.33 0.95 -2.78 -1.33
Bud Site -7.02 -9.46 -5.92 -4.17 -2.16 -3.52 -7.17 -15.41 -13.63 -6.10 -7.54 -11.77 -16.94 -13.81 -7.41
Cell Periphery 2.56 4.98 3.42 1.18 -0.69 1.35 2.09 2.50 3.94 1.09 2.10 3.51 3.90 4.36 0.95
Cytoplasm 7.36 -18.16 -9.62 -11.79 -0.35 0.55 -25.25 -30.15 -31.03 3.40 5.93 -30.37 -30.62 -34.40 -0.09
Cytoplasmic Foci 8.45 3.98 5.05 0.16 2.52 3.14 0.38 10.15 7.92 8.32 8.44 3.02 15.36 8.34 11.47
Eisosomes 7.77 9.28 2.51 -2.54 -3.40 2.81 4.80 3.92 2.34 -2.36 6.98 9.57 7.06 0.42 -3.98
Endoplasmic Reticulum 3.13 -8.23 -4.54 -5.99 1.68 1.71 -0.96 -2.77 -5.17 -1.79 3.03 -7.31 -4.78 -7.91 2.93
Endosome -3.25 5.04 11.60 14.71 7.42 -1.79 12.98 16.03 20.75 2.79 -3.74 12.48 20.32 26.05 8.37
Golgi -12.41 7.64 13.25 22.65 6.48 -7.56 15.05 16.46 23.90 1.00 -14.18 15.38 21.55 33.48 6.15
Lipid Particles 12.05 11.78 11.24 0.68 1.57 3.93 8.86 11.45 7.74 3.22 10.56 14.64 18.19 8.19 6.10
Mitochondria -1.89 30.44 34.80* 37.69* 8.35 1.79 35.84* 39.75* 43.65* 3.29 -0.18 46.25* 54.31* 59.39* 8.93
Mitotic Spindle -12.34 -12.48 -5.00 -1.53 -0.20 -6.10 -7.28 -13.30 -9.42 -5.14 -13.31 -14.19 -14.67 -8.32 -4.23
None 1.14 -2.48 2.18 0.35 5.32 1.73 0.80 0.73 -1.01 0.11 2.00 -1.73 1.53 -0.36 3.37
Nuclear Periphery 1.69 -3.46 -1.19 -4.26 2.92 0.71 -0.79 -1.83 -2.38 -1.38 1.31 -2.92 -2.70 -3.81 -0.57
Nuclear Periphery Foci -0.19 -5.34 -4.70 -4.69 -0.68 0.84 -1.30 -2.14 -3.01 0.73 0.58 -4.49 -5.05 -5.41 2.24
Nucleolus 1.08 -4.68 4.27 2.90 7.66 2.97 0.53 2.19 -1.04 1.68 2.51 -4.28 3.37 0.72 6.82
Nucleus 7.29 -17.22 -8.21 -9.79 1.86 4.16 -17.96 -20.38 -23.16 3.37 8.28 -24.72 -21.66 -25.34 4.03
Peroxisomes -1.25 2.43 -2.73 -2.25 -3.61 0.48 0.08 -2.66 -3.15 -2.37 -0.50 1.89 -3.51 -3.14 -4.66
Vacuole -1.59 -15.61 -12.09 -11.85 -7.47 -0.23 -13.02 -25.64 -26.03 -11.31 -1.32 -20.22 -29.50 -29.18 -14.77
Vacuole Periphery -2.75 -3.83 17.25 16.37 11.90 0.13 8.82 7.69 8.73 -0.52 -1.80 1.26 9.48 11.16 6.64
Standard name
Human Ortholog
Description Protein required for assembly of the cytochrome bc(1) complex; acts as a chaperone for Rip1p and facilitates its insertion into the complex at a late stage of assembly; localized to the mitochondrial matrix; null mutant exhibits a respiratory growth defect and reduced mitochondrial zinc levels, which is characteristic of mutations affecting bc(1) complex assembly; member of the LYR protein family; human LYRM7 is a functional ortholog
Localization
Cell Percentages mitochondrion (83%)
Cell Cycle Regulation No
Subcompartmental Group mito-1

Mzm1

Mzm1


Nearest neighbours ( genes)

correlation threshold

0.6

1.0

0.80


Biological Process (Gene Ontology)

Molecular Function (Gene Ontology)

Cellular Component (Gene Ontology)


Endocytosis
Temp Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Vph1-GFP)
37℃
RT
Cell Cycle Omics

CYCLoPs (Mzm1-GFP)
Gene / Allele Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Sac6-tdTomato)
Gene Images
Gene Images
Images are not yet available
Images are not yet available