Standard name | |
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Human Ortholog | |
Description | Protein involved in rRNA and ribosome biogenesis; activated in stochastic pulses of nuclear localization; binds polymerase A and C motif; subunit of the RPD3L histone deacetylase complex; has chromatin specific SANT domain; involved in telomeric gene silencing and filamentation; relative distribution to the nucleus increases upon DNA replication stress |
ensLOC | DeepLoc | |||||||||||||||||||||||
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Localization | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | WT1 | WT2 | WT3 | AF100 | AF140 | AF180 |
Cortical Patches | 0 | 0 | 0 | 0 | 0 | 0 | 1 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 2 | 0 | 0 | 0 |
Bud | 3 | 2 | 0 | 1 | 0 | 1 | 5 | – | 4 | 3 | 6 | 4 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 4 | 9 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 2 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 2 | 2 | 4 | 0 | 0 | 0 | 0 | 0 | 0 | – | – | – | – | – | – |
Cell Periphery | 1 | 5 | 9 | 0 | 2 | 0 | 2 | – | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 4 | 8 | 4 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 156 | 332 | 146 | 25 | 158 | 143 | 185 | – | 111 | 127 | 118 | 143 | 22 | 56 | 85 | 89 | 121 | 98 | 150 | 316 | 141 | 49 | 114 | 137 |
Endoplasmic Reticulum | 0 | 2 | 3 | 1 | 0 | 0 | 0 | – | 0 | 0 | 0 | 2 | 0 | 0 | 2 | 8 | 2 | 4 | 2 | 2 | 4 | 0 | 0 | 2 |
Endosome | 0 | 2 | 0 | 7 | 8 | 21 | 20 | – | 9 | 11 | 8 | 4 | 5 | 4 | 8 | 1 | 0 | 0 | 1 | 4 | 1 | 0 | 0 | 1 |
Golgi | 1 | 0 | 2 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 3 | 2 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
Mitochondria | 4 | 0 | 0 | 0 | 1 | 38 | 40 | – | 79 | 87 | 179 | 108 | 0 | 1 | 0 | 0 | 1 | 0 | 1 | 0 | 2 | 1 | 2 | 1 |
Nucleus | 1 | 0 | 4 | 134 | 25 | 22 | 15 | – | 37 | 41 | 38 | 63 | 84 | 75 | 65 | 1 | 3 | 2 | 0 | 3 | 1 | 2 | 8 | 11 |
Nuclear Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
Nucleolus | 0 | 0 | 0 | 2 | 0 | 0 | 0 | – | 2 | 2 | 3 | 2 | 1 | 3 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 2 |
Peroxisomes | 0 | 1 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 0 | 0 | 1 | 1 | 0 | 0 | 2 | – | 2 | 2 | 2 | 4 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 2 | 4 |
Vac/Vac Membrane | 0 | 5 | 3 | 26 | 45 | 46 | 47 | – | 42 | 39 | 44 | 29 | 21 | 23 | 23 | 23 | 16 | 7 | 0 | 8 | 2 | 0 | 1 | 3 |
Unique Cell Count | 161 | 340 | 155 | 183 | 219 | 240 | 279 | 242 | 259 | 326 | 299 | 122 | 152 | 174 | 107 | 136 | 104 | 161 | 346 | 164 | 56 | 139 | 181 | |
Labelled Cell Count | 166 | 349 | 168 | 197 | 239 | 271 | 317 | 287 | 314 | 401 | 364 | 133 | 163 | 185 | 129 | 153 | 117 | 161 | 346 | 164 | 56 | 139 | 181 |
Screen | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | AF100 | AF140 | AF180 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Mean Cell GFP Intensity (1e-4) | 6.4 | 9.9 | 8.5 | 8.5 | 7.7 | 5.9 | 5.9 | – | 5.2 | 5.1 | 4.6 | 4.7 | 8.7 | 8.5 | 7.5 | 11.7 | 11.9 | 11.4 | – | 8.2 | 8.4 |
Std Deviation (1e-4) | 0.9 | 1.4 | 1.4 | 2.0 | 1.7 | 1.4 | 1.5 | – | 1.6 | 1.3 | 1.0 | 1.1 | 1.4 | 1.8 | 1.5 | 2.4 | 2.4 | 2.1 | – | 1.2 | 1.7 |
Intensity Change (Log2) | – | – | – | 0.0 | -0.15 | -0.53 | -0.52 | – | -0.69 | -0.73 | -0.88 | -0.84 | 0.04 | -0.0 | -0.17 | 0.47 | 0.49 | 0.42 | – | -0.04 | -0.01 |
Localization | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Cortical Patches | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Neck | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cell Periphery | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | -0.8 | 0 | -0.7 |
Cytoplasm | -14.8 | -5.4 | -7.6 | -6.5 | – | -9.8 | -9.4 | -11.9 | -9.7 | -12.9 | -10.6 | -9.0 | -2.9 | -1.6 | 0 |
Endoplasmic Reticulum | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Endosome | 0 | 0 | 3.8 | 3.4 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Golgi | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Mitochondria | 0 | 0 | 5.2 | 4.9 | – | 7.9 | 8.1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleus | 13.2 | 3.1 | 2.6 | 1.4 | – | 4.1 | 4.2 | 3.3 | 5.3 | 11.8 | 9.4 | 7.7 | 0 | 0 | 0 |
Nuclear Periphery | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleolus | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Peroxisomes | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Vacuole | 4.0 | 5.3 | 5.1 | 4.7 | – | 4.7 | 4.3 | 4.0 | 3.1 | 4.5 | 4.2 | 3.8 | 5.2 | 3.4 | 0 |
R1 | R2 | R3 | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Concentration | 1.6476 | 1.7378 | 1.4725 | 1.5875 | 0.909 | 1.9452 | 2.1842 | 2.8272 | 2.5393 | 1.9228 | 1.9376 | 2.4551 | 3.1166 | 3.827 | 3.1413 | 3.5667 | 3.1434 | 3.4802 |
Actin | 0.0454 | 0.0012 | 0.0034 | 0.0001 | 0.0073 | 0.0055 | 0.0103 | 0.0008 | 0.0126 | 0.0037 | 0.006 | 0.0006 | 0.0102 | 0.001 | 0.0034 | 0.04 | 0.0381 | 0.004 |
Bud | 0.0017 | 0.0047 | 0.0018 | 0.0004 | 0.0007 | 0.0014 | 0.0019 | 0.004 | 0.0065 | 0.0002 | 0.0058 | 0.0015 | 0.0038 | 0.0044 | 0.0049 | 0.0032 | 0.0006 | 0.002 |
Bud Neck | 0.0036 | 0.0008 | 0.001 | 0.0011 | 0.0043 | 0.0059 | 0.0079 | 0.0013 | 0.0021 | 0.0011 | 0.0016 | 0.0043 | 0.0029 | 0.001 | 0.0024 | 0.0097 | 0.0029 | 0.0083 |
Bud Periphery | 0.0017 | 0.0015 | 0.0011 | 0.0003 | 0.0011 | 0.0011 | 0.0012 | 0.0013 | 0.0032 | 0.0001 | 0.0024 | 0.0008 | 0.0052 | 0.0022 | 0.0021 | 0.0037 | 0.0007 | 0.0018 |
Bud Site | 0.0061 | 0.0071 | 0.0017 | 0.0004 | 0.0007 | 0.0011 | 0.0055 | 0.0252 | 0.0046 | 0.0005 | 0.0017 | 0.0007 | 0.0046 | 0.0099 | 0.0042 | 0.009 | 0.0012 | 0.0015 |
Cell Periphery | 0.0005 | 0.0003 | 0.0001 | 0.0002 | 0.0002 | 0.0001 | 0.0005 | 0.0002 | 0.0005 | 0.0001 | 0.0001 | 0.0001 | 0.0006 | 0.0002 | 0.0002 | 0.0024 | 0.0001 | 0.0001 |
Cytoplasm | 0.5342 | 0.6442 | 0.6103 | 0.6451 | 0.5547 | 0.5876 | 0.4884 | 0.4786 | 0.5243 | 0.5479 | 0.3666 | 0.5499 | 0.5182 | 0.6125 | 0.5857 | 0.4877 | 0.4333 | 0.4494 |
Cytoplasmic Foci | 0.023 | 0.014 | 0.0101 | 0.0817 | 0.0175 | 0.0096 | 0.0351 | 0.008 | 0.0134 | 0.0481 | 0.0465 | 0.0107 | 0.0264 | 0.0109 | 0.0133 | 0.0168 | 0.0179 | 0.0069 |
Eisosomes | 0.0009 | 0 | 0 | 0 | 0.0001 | 0 | 0.0001 | 0 | 0.0001 | 0.0002 | 0.0001 | 0 | 0.0002 | 0 | 0 | 0.0003 | 0.0005 | 0 |
Endoplasmic Reticulum | 0.0079 | 0.0089 | 0.005 | 0.0032 | 0.0034 | 0.0058 | 0.009 | 0.0029 | 0.0035 | 0.003 | 0.005 | 0.003 | 0.0045 | 0.0018 | 0.0033 | 0.0087 | 0.0057 | 0.0021 |
Endosome | 0.0251 | 0.008 | 0.016 | 0.0419 | 0.0661 | 0.0124 | 0.0241 | 0.0031 | 0.0081 | 0.0111 | 0.0288 | 0.0069 | 0.0202 | 0.0049 | 0.0149 | 0.0193 | 0.0252 | 0.0077 |
Golgi | 0.0116 | 0.0009 | 0.0093 | 0.0013 | 0.032 | 0.0049 | 0.0039 | 0.0002 | 0.0038 | 0.0042 | 0.0175 | 0.0002 | 0.005 | 0.0004 | 0.0024 | 0.0108 | 0.0067 | 0.0034 |
Lipid Particles | 0.0082 | 0.0006 | 0.0013 | 0.0092 | 0.0171 | 0.0068 | 0.0144 | 0.0001 | 0.0049 | 0.0061 | 0.0393 | 0.0001 | 0.008 | 0.0001 | 0.0048 | 0.0044 | 0.0222 | 0.005 |
Mitochondria | 0.0102 | 0.0004 | 0.0102 | 0.0003 | 0.0317 | 0.0146 | 0.0027 | 0.0008 | 0.004 | 0.001 | 0.0216 | 0.0006 | 0.0045 | 0.0005 | 0.0023 | 0.0052 | 0.0048 | 0.0025 |
None | 0.0391 | 0.0477 | 0.064 | 0.0059 | 0.0664 | 0.0141 | 0.068 | 0.1466 | 0.0717 | 0.0908 | 0.0457 | 0.039 | 0.0276 | 0.0323 | 0.0243 | 0.0267 | 0.054 | 0.0141 |
Nuclear Periphery | 0.0186 | 0.0128 | 0.015 | 0.0068 | 0.0097 | 0.0173 | 0.0114 | 0.0054 | 0.0071 | 0.0052 | 0.0184 | 0.0091 | 0.0076 | 0.0047 | 0.0064 | 0.0107 | 0.0311 | 0.0064 |
Nucleolus | 0.0018 | 0.0013 | 0.001 | 0.0012 | 0.0117 | 0.0041 | 0.0022 | 0.0018 | 0.0041 | 0.0046 | 0.0022 | 0.0031 | 0.0042 | 0.0021 | 0.0019 | 0.0026 | 0.0054 | 0.0034 |
Nucleus | 0.2124 | 0.2291 | 0.2258 | 0.1671 | 0.1639 | 0.2926 | 0.2739 | 0.283 | 0.2891 | 0.2288 | 0.3231 | 0.3441 | 0.3092 | 0.2925 | 0.2954 | 0.3116 | 0.3058 | 0.4665 |
Peroxisomes | 0.0116 | 0.0027 | 0.0014 | 0.0021 | 0.0012 | 0.0023 | 0.0151 | 0.0003 | 0.0077 | 0.0362 | 0.0303 | 0.0002 | 0.0154 | 0.0008 | 0.0042 | 0.0109 | 0.0076 | 0.0026 |
Punctate Nuclear | 0.0225 | 0.0076 | 0.0159 | 0.0016 | 0.0021 | 0.007 | 0.0171 | 0.0338 | 0.0177 | 0.0051 | 0.0317 | 0.0212 | 0.0126 | 0.0138 | 0.0177 | 0.008 | 0.0321 | 0.0088 |
Vacuole | 0.012 | 0.0056 | 0.0043 | 0.0254 | 0.0051 | 0.0048 | 0.0063 | 0.0022 | 0.01 | 0.0015 | 0.0043 | 0.0028 | 0.008 | 0.0035 | 0.0051 | 0.007 | 0.003 | 0.003 |
Vacuole Periphery | 0.0019 | 0.0005 | 0.001 | 0.0048 | 0.0029 | 0.001 | 0.0011 | 0.0003 | 0.001 | 0.0003 | 0.0012 | 0.001 | 0.0011 | 0.0005 | 0.001 | 0.0014 | 0.001 | 0.0006 |
R1 | R2 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Gene Expression | 22.7478 | 22.5401 | 23.9978 | 26.0016 | 26.2954 | 23.0091 | 21.0563 | 23.2401 | 21.3822 | 26.4608 |
Translational Efficiency | 1.0061 | 1.0368 | 0.8789 | 0.6495 | 0.977 | 0.8369 | 0.8926 | 0.796 | 0.983 | 0.9209 |
Dataset | Hit |
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Protein Concentration | ✘ |
Protein Localization | ✘ |
Gene Expression | ✘ |
Translational Efficiency | ✘ |
Temp | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Vph1-GFP) |
---|---|---|---|---|
37℃ | ||||
RT |
Gene / Allele | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Sac6-tdTomato) |
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Gene | Images |
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Gene | Images |
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