Standard name | |
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Human Ortholog | |
Description | Subunit of the condensin complex; condensin reorganizes chromosomes during both mitosis and meiosis; essential SMC chromosomal ATPase family member that forms a subcomplex with Smc2p that has ATP-hydrolyzing and DNA-binding activity, but other condensin subunits are required for chromatin binding; required for clustering of tRNA genes at the nucleolus |
ensLOC | DeepLoc | |||||||||||||||||||||||
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Localization | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | WT1 | WT2 | WT3 | AF100 | AF140 | AF180 |
Cortical Patches | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
Bud | 0 | 0 | 0 | 0 | 2 | 2 | 17 | 17 | 9 | – | 5 | 7 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 2 | 1 | 5 | 2 |
Bud Neck | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 2 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
Bud Site | 0 | 0 | 0 | 0 | 2 | 16 | 17 | 29 | 14 | – | 11 | 21 | 0 | 1 | 0 | 0 | 0 | 0 | – | – | – | – | – | – |
Cell Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 9 | 7 | 6 | 7 | 16 | 25 | 21 | 22 | 13 | – | 8 | 6 | 14 | 41 | 57 | 24 | 13 | 13 | 0 | 2 | 1 | 0 | 1 | 2 |
Endoplasmic Reticulum | 1 | 3 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 1 | 1 | 6 | 8 | 6 | 1 | 1 | 1 | 0 | 1 | 1 |
Endosome | 8 | 2 | 0 | 0 | 8 | 3 | 4 | 1 | 2 | – | 1 | 1 | 2 | 0 | 2 | 3 | 7 | 10 | 15 | 6 | 1 | 7 | 5 | 16 |
Golgi | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 1 |
Mitochondria | 13 | 15 | 57 | 119 | 123 | 258 | 302 | 494 | 311 | – | 258 | 469 | 6 | 7 | 53 | 12 | 4 | 11 | 7 | 3 | 1 | 1 | 6 | 7 |
Nucleus | 294 | 159 | 140 | 165 | 247 | 269 | 397 | 500 | 234 | – | 223 | 323 | 235 | 270 | 266 | 147 | 110 | 119 | 252 | 149 | 121 | 110 | 209 | 161 |
Nuclear Periphery | 6 | 6 | 0 | 0 | 12 | 5 | 28 | 10 | 6 | – | 8 | 17 | 1 | 6 | 4 | 0 | 2 | 4 | 14 | 0 | 1 | 0 | 0 | 2 |
Nucleolus | 44 | 18 | 7 | 20 | 67 | 74 | 89 | 141 | 66 | – | 45 | 100 | 5 | 14 | 20 | 15 | 16 | 22 | 69 | 19 | 12 | 11 | 14 | 21 |
Peroxisomes | 1 | 0 | 0 | 0 | 1 | 0 | 1 | 0 | 0 | – | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 5 | 0 | 1 | 2 | 13 | 10 | 21 | 26 | 7 | – | 2 | 8 | 1 | 1 | 0 | 2 | 5 | 2 | 14 | 4 | 3 | 5 | 8 | 5 |
Vac/Vac Membrane | 12 | 9 | 2 | 0 | 4 | 3 | 12 | 16 | 1 | – | 4 | 8 | 14 | 12 | 13 | 9 | 10 | 20 | 10 | 12 | 11 | 14 | 52 | 72 |
Unique Cell Count | 364 | 195 | 162 | 212 | 372 | 436 | 604 | 835 | 413 | 351 | 590 | 266 | 335 | 377 | 203 | 148 | 174 | 395 | 205 | 162 | 160 | 313 | 300 | |
Labelled Cell Count | 393 | 219 | 215 | 313 | 495 | 665 | 910 | 1258 | 663 | 565 | 961 | 278 | 353 | 417 | 219 | 176 | 207 | 395 | 205 | 162 | 160 | 313 | 300 |
Screen | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | AF100 | AF140 | AF180 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Mean Cell GFP Intensity (1e-4) | 7.3 | 5.9 | 4.3 | 4.1 | 4.4 | 4.0 | 4.0 | 3.8 | 3.3 | – | 3.4 | 3.1 | 6.0 | 6.1 | 5.5 | 8.0 | 8.6 | 8.9 | 5.9 | 5.8 | 6.2 |
Std Deviation (1e-4) | 1.4 | 1.1 | 0.6 | 0.7 | 1.2 | 1.0 | 1.3 | 0.9 | 0.8 | – | 1.0 | 0.8 | 1.1 | 1.5 | 1.5 | 1.8 | 2.2 | 2.2 | 1.1 | 1.4 | 1.3 |
Intensity Change (Log2) | – | – | – | -0.06 | 0.04 | -0.1 | -0.11 | -0.17 | -0.36 | – | -0.35 | -0.47 | 0.48 | 0.52 | 0.35 | 0.91 | 1.01 | 1.06 | 0.45 | 0.43 | 0.55 |
Localization | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Cortical Patches | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cell Periphery | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | -0.2 | 0.3 | 1.0 | -0.1 | 0 | -0.3 | – | 0 | 0 | 0.7 | 3.0 | 3.8 | 2.8 | 1.9 | 1.5 |
Endoplasmic Reticulum | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Endosome | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Golgi | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Mitochondria | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | -9.3 | -10.3 | -5.6 | -7.1 | -7.2 | -6.6 |
Nucleus | -2.1 | -4.8 | -5.8 | -5.1 | -6.4 | -6.7 | – | -5.3 | -7.3 | 0.6 | -1.6 | -3.9 | -3.2 | -2.7 | -3.9 |
Nuclear Periphery | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleolus | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | -0.1 | 0.5 | 1.2 | 2.2 | 2.7 |
Peroxisomes | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Vacuole | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 2.1 | 0 | 0 | 0 | 2.5 | 3.8 |
R1 | R2 | R3 | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Concentration | 3.8614 | 3.6023 | 3.7757 | 3.2805 | 3.4715 | 3.7861 | 3.2083 | 2.9834 | 3.1021 | 2.6843 | 2.6465 | 2.639 | 0.9851 | 1.1323 | 0.9192 | 0.8475 | 0.5554 | 0.8487 |
Actin | 0 | 0.0001 | 0.0006 | 0.0001 | 0.0001 | 0.0001 | 0.0918 | 0.0002 | 0.0225 | 0.0024 | 0.0035 | 0.0008 | 0.0037 | 0.0002 | 0.0203 | 0.0002 | 0.0075 | 0.0001 |
Bud | 0 | 0.0001 | 0.0002 | 0.0002 | 0.0001 | 0.0001 | 0.0007 | 0.0001 | 0.0008 | 0.0006 | 0.0005 | 0.0001 | 0.0003 | 0.0001 | 0.0003 | 0.0001 | 0.0004 | 0 |
Bud Neck | 0.0002 | 0.0018 | 0.0027 | 0.0029 | 0.0186 | 0.0106 | 0.0065 | 0.0009 | 0.0012 | 0.0027 | 0.0128 | 0.0028 | 0.0006 | 0.0011 | 0.0022 | 0.0013 | 0.013 | 0.003 |
Bud Periphery | 0 | 0.0001 | 0.0005 | 0.0003 | 0.0005 | 0.0002 | 0.001 | 0.0001 | 0.0009 | 0.0014 | 0.0018 | 0.0003 | 0.0002 | 0.0002 | 0.0008 | 0.0002 | 0.0019 | 0.0001 |
Bud Site | 0.0001 | 0.0006 | 0.001 | 0.0009 | 0.0017 | 0.0003 | 0.0105 | 0.0009 | 0.0034 | 0.0026 | 0.001 | 0.0002 | 0.0009 | 0.0006 | 0.0035 | 0.0006 | 0.0018 | 0.0001 |
Cell Periphery | 0 | 0 | 0.0003 | 0.0002 | 0.0003 | 0.0001 | 0.0005 | 0.0001 | 0.0002 | 0.0003 | 0.0004 | 0.0001 | 0.0001 | 0.0001 | 0.0002 | 0.0001 | 0.0005 | 0 |
Cytoplasm | 0.0004 | 0.004 | 0.0015 | 0.0006 | 0.0001 | 0.0004 | 0.0063 | 0.0088 | 0.0088 | 0.0012 | 0.0006 | 0.0003 | 0.0057 | 0.0213 | 0.0081 | 0.0046 | 0.0007 | 0.001 |
Cytoplasmic Foci | 0 | 0.0001 | 0.0004 | 0.0005 | 0.0019 | 0.0005 | 0.0294 | 0.0007 | 0.0071 | 0.0081 | 0.0069 | 0.0007 | 0.0119 | 0.0017 | 0.0077 | 0.0007 | 0.005 | 0.0002 |
Eisosomes | 0 | 0 | 0 | 0 | 0 | 0 | 0.001 | 0 | 0.0001 | 0 | 0.0002 | 0 | 0.0001 | 0 | 0.0003 | 0 | 0.0006 | 0 |
Endoplasmic Reticulum | 0.0001 | 0.0003 | 0.0006 | 0.0004 | 0 | 0.0001 | 0.0062 | 0.001 | 0.0013 | 0.002 | 0.0013 | 0.0002 | 0.0046 | 0.0011 | 0.0019 | 0.0033 | 0.0006 | 0.0001 |
Endosome | 0.0001 | 0.0002 | 0.0025 | 0.0008 | 0.0007 | 0.0006 | 0.0386 | 0.0011 | 0.0092 | 0.0166 | 0.0149 | 0.0036 | 0.0104 | 0.0015 | 0.0082 | 0.0043 | 0.0071 | 0.0003 |
Golgi | 0 | 0 | 0.0004 | 0.0002 | 0.0006 | 0.0001 | 0.0129 | 0.0001 | 0.0056 | 0.0029 | 0.015 | 0.0028 | 0.0013 | 0.0002 | 0.003 | 0.0003 | 0.0038 | 0 |
Lipid Particles | 0 | 0.0001 | 0.0009 | 0.0027 | 0.0056 | 0.0006 | 0.0491 | 0.0001 | 0.0046 | 0.0076 | 0.0361 | 0.0098 | 0.0049 | 0.0018 | 0.0119 | 0.0034 | 0.017 | 0.0006 |
Mitochondria | 0.0002 | 0.0002 | 0.0008 | 0.0003 | 0.0003 | 0.0002 | 0.0053 | 0.0005 | 0.0064 | 0.0039 | 0.0217 | 0.013 | 0.0018 | 0.0004 | 0.0057 | 0.0003 | 0.0152 | 0.0003 |
None | 0.0001 | 0.0004 | 0.0008 | 0.0005 | 0.0002 | 0.0001 | 0.0097 | 0.0002 | 0.001 | 0.0006 | 0.0008 | 0.0001 | 0.0057 | 0.0039 | 0.0186 | 0.0011 | 0.0021 | 0.0005 |
Nuclear Periphery | 0.0075 | 0.0066 | 0.0277 | 0.035 | 0.0019 | 0.0073 | 0.0754 | 0.0267 | 0.0344 | 0.0385 | 0.0722 | 0.0153 | 0.0173 | 0.0596 | 0.0629 | 0.0375 | 0.0302 | 0.0094 |
Nucleolus | 0.0349 | 0.092 | 0.1291 | 0.3705 | 0.4608 | 0.0952 | 0.0144 | 0.037 | 0.1266 | 0.2918 | 0.2704 | 0.1103 | 0.0395 | 0.1031 | 0.1357 | 0.2971 | 0.4047 | 0.0921 |
Nucleus | 0.9499 | 0.8585 | 0.7952 | 0.4744 | 0.2584 | 0.8586 | 0.6039 | 0.8877 | 0.7088 | 0.5602 | 0.4103 | 0.7972 | 0.8708 | 0.7498 | 0.6419 | 0.5564 | 0.3333 | 0.8439 |
Peroxisomes | 0 | 0 | 0.0002 | 0.0001 | 0.0004 | 0.0001 | 0.0139 | 0 | 0.0046 | 0.0126 | 0.0051 | 0.0007 | 0.0007 | 0.0005 | 0.0084 | 0.0001 | 0.0038 | 0 |
Punctate Nuclear | 0.0061 | 0.0343 | 0.0312 | 0.107 | 0.2467 | 0.0242 | 0.0155 | 0.0312 | 0.0449 | 0.0376 | 0.1171 | 0.0404 | 0.0179 | 0.0511 | 0.0546 | 0.0856 | 0.1465 | 0.0475 |
Vacuole | 0.0002 | 0.0004 | 0.0028 | 0.001 | 0.001 | 0.0006 | 0.0037 | 0.0016 | 0.005 | 0.004 | 0.004 | 0.0006 | 0.0012 | 0.0012 | 0.0019 | 0.0021 | 0.0023 | 0.0003 |
Vacuole Periphery | 0.0001 | 0.0001 | 0.0008 | 0.0014 | 0.0001 | 0.0001 | 0.0037 | 0.0009 | 0.0027 | 0.0024 | 0.0036 | 0.0009 | 0.0005 | 0.0006 | 0.0016 | 0.0007 | 0.002 | 0.0001 |
R1 | R2 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Gene Expression | 11.1503 | 12.3543 | 9.7925 | 12.2609 | 13.2351 | 14.1263 | 14.4077 | 15.233 | 12.6024 | 15.8805 |
Translational Efficiency | 0.7781 | 0.5965 | 0.4998 | 0.4498 | 0.4569 | 0.5563 | 0.4672 | 0.3232 | 0.4016 | 0.4348 |
Dataset | Hit |
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Protein Concentration | ✘ |
Protein Localization | ✔ |
Gene Expression | ✘ |
Translational Efficiency | ✘ |
Temp | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Vph1-GFP) |
---|---|---|---|---|
37℃ | ||||
RT |
Gene / Allele | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Sac6-tdTomato) |
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Gene | Images |
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Gene | Images |
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