Standard name
Human Ortholog
Description Member of the PUF protein family; PUF family is defined by the presence of Pumilio homology domains that confer RNA binding activity; preferentially binds mRNAs encoding nucleolar ribosomal RNA-processing factors
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Micrographs

ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0 0 0 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud 0 0 0 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Neck 0 0 0 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Site 0 0 0 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0 – – – – – –
Cell Periphery 0 0 0.07 0 0 0 0 0 0.05 – 0 0 0 0 0 0.08 0.09 0 0 0 0 0 0 0
Cytoplasm 0.97 0.93 0.94 0.97 0.92 0.93 0.84 0.82 0.73 – 0.64 0.74 0.95 0.97 0.97 0.83 0.9 0.95 0.89 0.93 0.87 0.72 0.75 0.8
Endoplasmic Reticulum 0 0.06 0 0 0.05 0 0.07 0.09 0.07 – 0 0.06 0 0 0 0 0 0 0 0 0 0.19 0.15 0.14
Endosome 0 0 0 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Golgi 0 0 0 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Mitochondria 0 0 0 0 0 0.05 0.09 0.06 0.24 – 0.4 0.23 0 0 0 0 0 0 0 0 0 0 0 0
Nucleus 0 0 0 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nuclear Periphery 0 0 0 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nucleolus 0 0 0 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Peroxisomes 0 0 0 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0 0 0 0 0 0 0
SpindlePole 0 0 0 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Vac/Vac Membrane 0 0 0 0 0 0 0 0 0 – 0 0 0 0 0 0.1 0.07 0.05 0 0 0 0 0.05 0
ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0 0 2 0 2 4 6 7 7 – 3 7 0 1 1 0 0 0 0 0 1 0 1 1
Bud 0 1 0 1 0 0 3 2 0 – 8 4 1 0 2 0 0 0 0 0 2 0 0 0
Bud Neck 0 0 0 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0 0 0 0 0 1 0
Bud Site 0 0 0 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0 – – – – – –
Cell Periphery 2 6 19 6 8 2 12 7 14 – 12 13 4 3 11 9 11 0 0 0 0 0 0 0
Cytoplasm 92 186 254 201 236 288 344 234 204 – 173 216 350 342 400 96 111 100 105 192 244 178 259 277
Endoplasmic Reticulum 2 11 6 5 14 8 27 27 19 – 11 17 16 8 7 5 5 3 4 2 10 46 51 47
Endosome 0 1 0 0 0 1 1 0 0 – 1 0 0 0 1 0 0 0 1 1 1 0 0 0
Golgi 0 0 1 0 0 0 3 1 0 – 0 0 0 0 0 1 1 0 0 0 2 0 3 1
Mitochondria 1 0 0 1 1 17 37 17 66 – 108 67 2 0 4 1 2 0 1 0 6 4 5 3
Nucleus 0 0 2 1 0 2 2 1 1 – 4 2 0 1 1 1 2 1 0 0 1 0 0 0
Nuclear Periphery 0 0 0 1 0 0 0 0 1 – 1 0 0 0 0 0 0 1 0 0 0 0 0 1
Nucleolus 0 0 0 0 0 0 0 0 0 – 0 0 0 0 1 0 0 0 0 0 0 0 0 0
Peroxisomes 0 0 0 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0 0 0 0 0 0 0
SpindlePole 0 0 0 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Vac/Vac Membrane 0 0 3 0 5 4 8 12 7 – 6 9 1 0 3 11 9 5 2 5 6 9 16 11
Unique Cell Count 95 199 269 208 256 311 410 285 278 269 290 367 351 412 115 124 105 118 207 282 247 347 348
Labelled Cell Count 97 205 287 216 266 326 443 308 319 327 335 374 355 431 124 141 110 118 207 282 247 347 348


Cytoplasm

(Huh et al. Nature 2003 425:686)
Screen WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 AF100 AF140 AF180
Mean Cell GFP Intensity (1e-4) 11.4 11.4 10.8 9.7 10.0 8.2 8.2 8.2 7.2 – 6.8 7.3 11.1 11.4 11.3 14.6 14.2 13.7 10.8 11.1 11.7
Std Deviation (1e-4) 1.9 1.8 1.3 1.3 1.3 1.2 1.2 1.2 1.2 – 1.4 1.2 1.4 1.6 1.4 2.6 2.3 2.1 1.7 1.7 1.6
Intensity Change (Log2) – – – -0.14 -0.1 -0.4 -0.38 -0.39 -0.58 – -0.67 -0.57 0.05 0.09 0.07 0.44 0.4 0.35 0.01 0.04 0.12

WT3RAP60RAP140RAP220RAP300RAP380RAP460RAP620RAP700051015WT3HU80HU120HU160051015WT3rpd3Δ_1rpd3Δ_2rpd3Δ_3051015WT1AF100AF140AF180051015
rapamycinhydroxy-urearpd3 knockoutalpha-factorMultiple Condition Time-Course Intensity PlotsGFP Intensity (1e-4)GFP Intensity (1e-4)GFP Intensity (1e-4)GFP Intensity (1e-4)

Localization RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3
Cortical Patches 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0
Bud 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0
Bud Neck 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0
Bud Site 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0
Cell Periphery -2.0 -2.0 -4.1 -2.5 -2.6 -1.0 – -1.3 -1.3 -4.0 -4.1 -2.7 0.3 0.6 -2.8
Cytoplasm 1.1 -1.0 -0.9 -4.1 -4.5 -6.7 – -8.6 -6.4 0.5 1.9 1.7 -3.5 -1.8 0.3
Endoplasmic Reticulum 0 1.9 0.3 2.6 3.6 2.6 – 1.2 2.2 1.5 0 -0.5 0 0 0
Endosome 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0
Golgi 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0
Mitochondria 0 0 3.9 5.1 4.1 8.5 – 11.6 8.4 0 0 0 0 0 0
Nucleus 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0
Nuclear Periphery 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0
Nucleolus 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0
Peroxisomes 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0
SpindlePole 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0
Vacuole 0 0 0 0 2.2 0 – 0 1.6 0 0 0 0 0 0

Images

Circle plot not available

Protein Concentration and Protein Localization Data

R1 R2 R3
G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase
Concentration 7.7694 10.6345 9.6178 9.0902 8.7963 10.1289 8.8704 12.4871 11.3222 8.9358 10.8126 11.2697 10.5339 12.2901 12.4104 10.4593 10.972 10.945
Actin 0.0179 0.0013 0.0042 0.0004 0.0018 0.0015 0.0097 0.0014 0.0017 0.0047 0.0015 0.001 0.0023 0.0026 0.0042 0.0005 0.0153 0.0015
Bud 0.0009 0.0009 0.0013 0.0011 0.0014 0.0009 0.001 0.0025 0.0012 0.0011 0.0005 0.0006 0.0011 0.0014 0.0063 0.0018 0.0022 0.0015
Bud Neck 0.0006 0.0004 0.0012 0.0009 0.0008 0.0012 0.0009 0.0002 0.0004 0.0007 0.0008 0.001 0.0008 0.001 0.0027 0.003 0.0015 0.0045
Bud Periphery 0.0012 0.0005 0.0007 0.0004 0.0008 0.0008 0.0009 0.0016 0.0008 0.0007 0.0002 0.0004 0.0007 0.0005 0.003 0.0009 0.0013 0.0012
Bud Site 0.0016 0.0019 0.0022 0.0006 0.0014 0.0004 0.0028 0.0041 0.0008 0.0008 0.0005 0.0001 0.0026 0.017 0.0175 0.0017 0.0037 0.0007
Cell Periphery 0.0013 0.0005 0.0006 0.0002 0.0003 0.0002 0.0005 0.0001 0.0002 0.0002 0.0002 0.0002 0.0005 0.0003 0.0011 0.0002 0.0003 0.0002
Cytoplasm 0.6822 0.8893 0.7626 0.6994 0.6124 0.767 0.6721 0.9137 0.825 0.6215 0.7737 0.8181 0.8355 0.905 0.7985 0.7566 0.7571 0.8647
Cytoplasmic Foci 0.0252 0.0133 0.0222 0.0204 0.042 0.0286 0.0374 0.0159 0.02 0.0421 0.025 0.0227 0.0265 0.0205 0.0334 0.0676 0.0535 0.0304
Eisosomes 0.0005 0 0.0002 0 0 0 0.0001 0 0 0.0001 0.0001 0 0 0 0.0001 0 0.0002 0
Endoplasmic Reticulum 0.0703 0.0242 0.0273 0.0478 0.013 0.0272 0.0299 0.0033 0.0114 0.0106 0.0359 0.0373 0.0227 0.0036 0.0143 0.006 0.0121 0.0162
Endosome 0.092 0.0421 0.1102 0.1285 0.2101 0.1099 0.1188 0.032 0.0826 0.1791 0.0769 0.0797 0.0629 0.0211 0.0548 0.0883 0.0888 0.0453
Golgi 0.0194 0.006 0.0146 0.0049 0.0283 0.0153 0.0291 0.0071 0.0079 0.0344 0.0062 0.0179 0.0077 0.0026 0.0038 0.0049 0.0054 0.0048
Lipid Particles 0.005 0.0001 0.0029 0.0001 0.0097 0.0004 0.0187 0.0001 0.0022 0.0027 0.0011 0.0001 0.0023 0.0012 0.002 0.0025 0.015 0.0014
Mitochondria 0.0239 0.003 0.0082 0.003 0.0212 0.026 0.0236 0.0119 0.019 0.0581 0.0341 0.0099 0.0071 0.0015 0.0022 0.0028 0.0063 0.0038
None 0.0104 0.0011 0.0044 0.0008 0.0021 0.0027 0.0013 0.0004 0.0011 0.0006 0.0026 0.0007 0.0068 0.0106 0.0173 0.0098 0.0078 0.0098
Nuclear Periphery 0.0089 0.0014 0.0026 0.0055 0.0143 0.0014 0.0092 0.0003 0.0027 0.0019 0.0039 0.001 0.0019 0.0006 0.003 0.0031 0.0035 0.0015
Nucleolus 0.0007 0 0.0004 0.0001 0.0003 0 0.0002 0 0 0.0001 0.0051 0 0.0002 0.0002 0.001 0.0005 0.0011 0.0001
Nucleus 0.0031 0.0012 0.0015 0.0016 0.0113 0.001 0.0016 0.0004 0.001 0.0012 0.0087 0.0007 0.0023 0.0017 0.0086 0.0125 0.0034 0.0026
Peroxisomes 0.0053 0.0001 0.0052 0.0001 0.0012 0.0003 0.0089 0.0002 0.0011 0.0039 0.0006 0.0002 0.0007 0.0008 0.0006 0.0009 0.0021 0.0018
Punctate Nuclear 0.0062 0.0001 0.0007 0.0001 0.0067 0.0001 0.001 0 0.0004 0.0005 0.0098 0.0001 0.0006 0.0007 0.0026 0.0037 0.0038 0.001
Vacuole 0.0186 0.0101 0.0209 0.0637 0.0138 0.0091 0.0231 0.0033 0.015 0.025 0.0094 0.0054 0.0124 0.0064 0.0208 0.0277 0.0133 0.0056
Vacuole Periphery 0.0048 0.0026 0.0056 0.0205 0.0068 0.0057 0.0091 0.0012 0.0055 0.01 0.0033 0.0029 0.0025 0.0008 0.0022 0.0049 0.0021 0.0015

Sequencing Data

R1 R2
G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Post-START S/G2 Metaphase Anaphase Telophase
Gene Expression 58.7489 60.2847 48.3016 53.5427 36.2078 35.5606 59.5515 47.3233 38.1405 53.0536
Translational Efficiency 1.1291 1.0458 1.0628 0.5851 1.0652 1.4895 0.712 0.8233 0.8538 0.7813

Hit Data

Dataset Hit
Protein Concentration ✘
Protein Localization ✔
Gene Expression ✘
Translational Efficiency ✘

Micrographs

Cell Count

R1 R2 R1 & R2
WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14
2634 1363 72 1141 1628 1855 143 145 4262 3218 215 1286

Protein Abundance

R1 R2 R1 & R2
WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14
Mean 1061.58 1244.04 1476.73 1276.94 1011.50 1181.91 1307.00 1190.94 1042.45 1208.23 1363.84 1267.24
Standard Deviation 137.53 187.48 217.94 172.44 190.01 171.71 187.44 160.78 161.47 181.18 213.76 173.31
Intensity Change Log 2 — 0.228820 0.476193 0.266478 — 0.224624 0.369763 0.235604 — 0.226774 0.425243 0.251496

Localization Score (DeepLoc)

R1 R2 R1 & R2
WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14
Actin 0.000115 0.000164 0.000610 0.000767 0.000240 0.000239 0.000539 0.000584 0.000163 0.000207 0.000563 0.000746
Bud Neck 0.000474 0.000231 0.004362 0.002011 0.000775 0.000595 0.003698 0.003172 0.000589 0.000441 0.003920 0.002142
Bud Site 0.016372 0.018297 0.022852 0.040643 0.026123 0.022793 0.018805 0.048514 0.020097 0.020888 0.020160 0.041530
Cell Periphery 0.000271 0.000205 0.000512 0.000564 0.000360 0.000179 0.000213 0.000193 0.000305 0.000190 0.000313 0.000522
Cytoplasm 0.688223 0.639759 0.253319 0.774128 0.568372 0.557204 0.242691 0.549754 0.642442 0.592171 0.246250 0.748829
Cytoplasmic Foci 0.189636 0.224991 0.092491 0.070228 0.238155 0.255371 0.128856 0.197247 0.208170 0.242503 0.116678 0.084549
Eisosomes 0.000011 0.000004 0.000041 0.000009 0.000012 0.000009 0.000080 0.000013 0.000011 0.000007 0.000067 0.000009
Endoplasmic Reticulum 0.008383 0.010640 0.021529 0.001101 0.012537 0.007368 0.013628 0.000795 0.009970 0.008754 0.016274 0.001066
Endosome 0.007039 0.010833 0.048989 0.008759 0.019371 0.020064 0.053178 0.033860 0.011750 0.016154 0.051775 0.011589
Golgi 0.027096 0.030886 0.012996 0.007905 0.026069 0.030039 0.002354 0.005026 0.026704 0.030398 0.005918 0.007580
Lipid Particles 0.000968 0.000610 0.006118 0.003571 0.002082 0.001045 0.007692 0.002387 0.001393 0.000861 0.007165 0.003437
Mitochondria 0.003524 0.000879 0.000077 0.000400 0.001639 0.001960 0.000077 0.000023 0.002804 0.001502 0.000077 0.000358
Mitotic Spindle 0.000309 0.001734 0.009806 0.003619 0.000459 0.004254 0.002794 0.003707 0.000366 0.003187 0.005142 0.003629
None 0.000748 0.000928 0.000052 0.000108 0.001681 0.000349 0.000112 0.000026 0.001105 0.000594 0.000092 0.000099
Nuclear Periphery 0.000034 0.000032 0.001337 0.000037 0.000437 0.000063 0.000889 0.000026 0.000188 0.000050 0.001039 0.000036
Nuclear Periphery Foci 0.000242 0.000622 0.006779 0.001084 0.001342 0.000365 0.005417 0.001032 0.000662 0.000474 0.005873 0.001078
Nucleolus 0.000072 0.000022 0.000307 0.000093 0.000351 0.000129 0.000533 0.000086 0.000178 0.000084 0.000458 0.000092
Nucleus 0.001963 0.001033 0.019381 0.002996 0.003954 0.002482 0.033041 0.001605 0.002723 0.001868 0.028467 0.002839
Peroxisomes 0.000305 0.000161 0.000736 0.001522 0.000354 0.000657 0.001231 0.003110 0.000324 0.000447 0.001065 0.001701
Vacuole 0.018735 0.019850 0.468215 0.075114 0.042184 0.053657 0.473324 0.143611 0.027692 0.039338 0.471613 0.082837
Vacuole Periphery 0.035481 0.038119 0.029492 0.005342 0.053503 0.041179 0.010848 0.005230 0.042365 0.039883 0.017091 0.005329

Localization Changes (T-score)

R1 R2 R1 & R2
UBP2_WT UBP14_WT UBP2UBP14_WT UBP2UBP14_UBP2 UBP2UBP14_UBP14 UBP2_WT UBP14_WT UBP2UBP14_WT UBP2UBP14_UBP2 UBP2UBP14_UBP14 UBP2_WT UBP14_WT UBP2UBP14_WT UBP2UBP14_UBP2 UBP2UBP14_UBP14
Actin -2.31 -3.90 -9.60 -8.97 -1.40 -0.00 -3.08 -2.26 -2.29 -0.08 -1.60 -5.35 -9.22 -8.49 -2.24
Bud Neck 4.99 -4.37 -7.90 -9.30 2.53 2.09 -5.96 -2.67 -2.88 0.73 3.13 -7.60 -7.80 -8.62 3.77
Bud Site -1.80 -1.29 -10.66 -9.44 -2.99 2.12 2.26 -3.26 -3.79 -4.02 -0.88 -0.18 -9.79 -9.31 -6.21
Cell Periphery 3.06 -2.39 -4.69 -6.21 -0.16 6.31 4.13 4.14 -0.18 0.64 6.69 -0.15 -3.81 -6.49 -3.02
Cytoplasm 4.96 11.96 -9.24 -11.94 -14.07 1.08 14.81 0.70 0.24 -9.93 7.17 21.14 -12.43 -17.28 -25.59
Cytoplasmic Foci -5.05 8.19 25.07 23.58 1.97 -2.37 9.77 3.05 4.18 -3.55 -6.97 11.08 27.81 31.61 4.01
Eisosomes 12.24 -1.96 1.54 -8.14 2.04 2.40 -4.60 -0.02 -1.61 4.57 6.79 -5.01 1.81 -4.38 5.16
Endoplasmic Reticulum -1.60 -2.23 9.83 7.82 3.57 4.04 -0.09 11.95 7.72 2.55 1.34 -1.52 14.73 10.62 3.96
Endosome -6.19 -8.37 -1.48 2.54 8.01 -0.54 -6.78 -2.78 -2.63 3.00 -6.36 -10.95 0.74 4.76 10.87
Golgi -2.66 4.05 17.53 15.39 1.57 -2.61 25.83 20.45 18.09 -3.35 -3.53 15.61 20.49 19.49 -0.73
Lipid Particles 6.23 -4.63 -7.33 -8.34 2.15 2.93 -4.62 -0.64 -4.42 4.43 3.73 -6.65 -6.02 -8.08 4.01
Mitochondria 10.87 16.48 12.57 2.74 -2.04 -0.67 9.80 10.17 4.33 3.83 4.34 19.00 13.07 4.04 -2.00
Mitotic Spindle -2.19 -2.63 -3.61 -1.61 1.72 -3.92 -2.19 -1.14 0.04 -0.35 -4.53 -3.38 -3.71 -0.37 1.02
None -0.24 9.87 8.75 1.12 -1.84 3.15 3.79 4.03 3.73 1.88 1.43 6.09 6.12 1.59 -0.10
Nuclear Periphery 0.19 -2.73 -0.68 -0.94 2.71 2.19 -1.88 2.39 2.38 5.58 2.09 -4.20 2.28 1.13 5.26
Nuclear Periphery Foci -3.17 -5.74 -9.92 -4.10 4.87 3.25 -4.10 0.62 -3.04 4.38 1.45 -6.90 -3.88 -7.04 6.20
Nucleolus 7.07 -2.80 -2.62 -12.83 2.53 2.07 -1.20 2.97 0.72 3.31 1.91 -2.82 2.54 -0.18 3.88
Nucleus 5.31 -2.67 -7.65 -10.60 2.41 1.79 -3.69 3.48 1.63 4.00 2.15 -4.54 -2.26 -4.43 4.42
Peroxisomes 7.44 -4.40 -11.95 -13.49 -5.60 -2.06 -6.45 -5.14 -4.40 -3.24 -1.45 -7.54 -12.59 -8.94 -3.79
Vacuole -0.72 -10.91 -17.12 -16.52 9.24 -3.67 -17.83 -6.87 -6.12 11.16 -6.46 -21.04 -16.47 -12.98 17.67
Vacuole Periphery -1.04 0.99 18.58 14.38 3.52 4.18 13.62 18.75 17.13 2.26 1.35 8.66 25.26 21.90 4.11
Protein Complexes26S Proteasome complex37S mitochondrial small ribosomal subunit54S mitochondrial large ribosomal subunit60S cytosolic large ribosomal subunitAar2-U5 snRNPAnaphase-Promoting Complex variant 1Anaphase-Promoting Complex variant 2Anaphase-Promoting Complex variant 3Anaphase-Promoting Complex variant 4Arp2/3 complexATG1 kinase complexBLOC-1 complexCcr4-Not complexCentral kinetochore CTF19 complexCleavage and polyadenylation specificity factorcomplexCMG helicase complexCMG-Pol epsilon complexCOMPASS complexCOP9 signalosome COPI vesicle coat complexCoQ6 biosynthesis complexCore mediator complexCORVET complexCTF18-RFC complexCURI complex variant 1CURI complex variant 2CURI complex variant 3Cytoplasmic exosome complex, DIS3 variantDASH complexDNA-directed RNA Polymerase I complexDNA-directed RNA polymerase II complexDNA-directed RNA polymerase III complexDNA replication factor C complexEGO complexELG1-RFC complex Elongator holoenzyme complexEndoplasmic Reticulum Membrane ComplexEukaryotic translation initiation factor 2BcomplexEukaryotic translation initiation factor 3core complexExocystExomer complexFAR complexGeneral transcription factor complex TFIIDGeneral transcription factor complex TFIIHGET4-GET5 transmembrane domain recognition complexGID ubiquitin ligase complexGin4 complexGolgi transport complexGSE complexHMC complexHOPS complexINO80 chromatin remodeling complexLSM1-7 complexLsm1-7-Pat1 complexLSM2-7 complexLSM2-8 complexMCM complexMICOS complexMitochondrial electron transport complex IIIMitochondrial inner membrane pre-sequence translocasecomplexMitochondrial outer membrane translocase holocomplexMitochondrial proton-transporting ATP synthase complexMitochondrial pyruvate dehydrogenase complexNineTeen complexNOP8 60s ribosome pre-assembly complexNuA3 histone acetyltransferase complexNuA4 histone acetyltransferase complexNuclear condensin complexNuclear/nucleolar exosome complex, DIS3-RRP6 variantNuclear pore complexNucleolar ribonuclease MRP complexNucleolar ribonuclease P complexOligosaccharyl transferase complex variant 1Oligosaccharyl transferase complex variant 2PAF1 complexPAS complexPhosphatidylinositol 3-kinase complex IPolarisomePrefoldin complexPRP19-associated complexRad17 RFC-like complexRetromer complexRPD3L histone deacetylase complexRPD3S histone deacetylase complexRQC complexRSC complex variant RSC1RSC complex variant RSC2SAGA complexSCF-Met30 ubiquitin ligase complexSCF-Ufo1 ubiquitin ligase complexSEA complexSeptin complexSET3C histone deacetylase complexSignal recognition particleSLIK (SAGA-like) complexSmall ribosomal subunit processome, variant1Small ribosomal subunit processome, variant2Small ribosomal subunit processome, variant3SMC5-SMC6 SUMO ligase complexSm complexSpliceosomal commitment complexSPOTS complexSWI/SNF chromatin remodelling complexSwr1 chromatin remodelling complexTHO complexTranscription factor TFIIIC complexTranslocon complexTRAPPIII protein complexTRAPPII protein complexTRAPPI protein complexTREX complexU1 snRNPU2 snRNPU4 snRNPU4/U6 snRNPU4/U6.U5 tri-snRNP complexU5 snRNPU6 snRNP complexUTP-A complexUTP-B complexUTP-C complex variant 1UTP-C complex variant 2UTP-C complex variant 3Vacuolar proton translocating ATPase complex,Golgi variantVacuolar proton translocating ATPase complex,vacuole variantCellular Components••••••••••••••••actinbud neckcell peripherycytoplasmendosomeERGolgimitochondrionmixednuclear peripherynucleolusnucleusperoxisomespindle polevacuolar membranevacuole
Standard name
Human Ortholog
Description Member of the PUF protein family; PUF family is defined by the presence of Pumilio homology domains that confer RNA binding activity; preferentially binds mRNAs encoding nucleolar ribosomal RNA-processing factors
Localization
Cell Percentages cytoplasm (99%)
Cell Cycle Regulation No
Subcompartmental Group cytoplasm-5

Puf4

Puf4


Nearest neighbours ( genes)

correlation threshold

0.6

1.0

0.80


Biological Process (Gene Ontology)
Molecular Function (Gene Ontology)
Cellular Component (Gene Ontology)

Endocytosis
Temp Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Vph1-GFP)
37℃
RT
Cell Cycle Omics

CYCLoPs (Puf4-GFP)
Gene / Allele Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Sac6-tdTomato)
Gene Images
Gene Images
Images are not yet available
Images are not yet available