Standard name
Human Ortholog
Description Nicotinamidase that converts nicotinamide to nicotinic acid; part of the NAD(+) salvage pathway; required for life span extension by calorie restriction; lacks a peroxisomal targeting signal but is imported into peroxisomes via binding to Gpd1p; PNC1 expression responds to all known stimuli that extend replicative life span; protein increases in abundance and relative distribution to cytoplasmic foci decreases upon DNA replication stress

Micrographs

ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0.31 0.25 0.27 0.35 0.27 0.25 0.24 0.3 0.24 0.23 0.31 0.23 0.15 0.15 0.06 0.13 0.1 0.28 0.24 0.2 0.26 0.46 0.47
Bud 0.05 0.09 0.09 0.11 0.07 0.11 0.05 0.06 0 0.1 0.08 0 0.05 0.06 0 0 0 0 0.05 0 0.06 0 0
Bud Neck 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Site 0 0.07 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cell Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cytoplasm 0.08 0.06 0 0.08 0.16 0.14 0.28 0.14 0.29 0.2 0.18 0.17 0.22 0.17 0.42 0.31 0.42 0 0 0 0 0 0
Endoplasmic Reticulum 0 0 0 0 0.05 0.05 0.05 0.05 0.06 0.1 0.14 0.08 0.09 0.14 0 0 0 0 0 0 0 0 0
Endosome 0.26 0.1 0.12 0.16 0.05 0.18 0.06 0.09 0.07 0.05 0 0.07 0 0 0.09 0.12 0 0.17 0.1 0.06 0.11 0.07 0
Golgi 0.2 0.22 0.3 0.21 0.55 0.11 0.28 0.25 0.29 0.33 0.36 0.53 0.6 0.57 0.42 0.44 0.45 0.06 0 0.05 0.06 0.09 0.09
Mitochondria 0.06 0.21 0 0 0 0.24 0 0.12 0.05 0.08 0.07 0 0 0 0.05 0 0 0 0 0 0 0 0
Nucleus 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nuclear Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nucleolus 0.08 0.09 0.09 0.05 0 0.17 0.06 0.09 0.07 0.1 0.11 0 0 0.06 0 0.05 0 0 0 0 0 0 0
Peroxisomes 0.12 0.25 0.18 0.15 0 0 0 0 0 0 0 0 0 0 0 0 0 0.34 0.36 0.49 0.36 0.24 0.29
SpindlePole 0.23 0.1 0.22 0.24 0.12 0 0 0 0 0 0 0.07 0 0 0 0.1 0 0.07 0.13 0.14 0.09 0 0
Vac/Vac Membrane 0 0 0.05 0 0.05 0.12 0.16 0.14 0.05 0.09 0.07 0 0 0 0.08 0.15 0.12 0 0 0 0 0 0
ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 47 35 37 43 45 28 48 31 39 37 66 44 43 36 5 15 10 53 50 33 44 151 135
Bud 8 12 13 14 11 12 10 6 6 16 17 7 15 13 3 1 2 2 11 5 9 8 9
Bud Neck 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 1 3 0 2
Bud Site 1 10 2 2 0 4 1 1 2 1 1 0 0 0 0 0 0
Cell Periphery 2 5 3 1 4 0 5 3 5 3 4 2 3 3 0 3 3 0 0 0 0 0 0
Cytoplasm 12 8 3 10 27 16 57 15 47 32 39 32 62 40 37 36 44 3 4 0 5 6 4
Endoplasmic Reticulum 3 2 1 0 8 6 11 5 10 16 29 16 25 32 2 4 2 0 0 0 0 2 3
Endosome 39 14 16 19 8 21 13 9 12 8 8 13 2 2 8 14 4 33 20 10 18 24 9
Golgi 30 30 42 26 92 12 56 26 47 52 76 102 172 135 37 51 47 11 7 8 9 29 24
Mitochondria 9 29 1 3 1 27 2 12 9 13 16 4 0 1 4 1 2 1 3 1 0 3 1
Nucleus 0 0 0 1 0 1 0 1 1 2 0 0 0 0 0 0 0 0 0 0 0 1 0
Nuclear Periphery 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1
Nucleolus 12 12 12 6 4 19 12 9 12 16 23 8 8 13 3 6 4 0 0 0 0 1 0
Peroxisomes 18 34 25 18 1 0 0 0 2 0 0 6 6 7 0 0 1 63 74 82 61 79 82
SpindlePole 35 14 31 29 20 5 9 1 3 3 4 13 7 5 3 12 4 13 26 23 15 13 7
Vac/Vac Membrane 5 3 7 5 8 14 32 15 8 15 16 3 5 3 7 17 12 0 0 0 0 0 2
Unique Cell Count 151 138 139 122 167 114 201 104 164 158 214 192 288 235 88 117 104 189 208 169 171 327 290
Labelled Cell Count 221 209 194 177 229 165 256 135 203 214 299 251 348 290 109 160 135 189 208 169 171 327 290


Peroxisomes

(Huh et al. Nature 2003 425:686)
Screen WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 AF100 AF140 AF180
Mean Cell GFP Intensity (1e-4) 15.4 21.7 20.7 18.9 25.7 17.6 24.8 21.9 23.0 23.8 22.4 28.5 44.8 51.1 23.6 24.6 25.0 16.3 20.8 22.1
Std Deviation (1e-4) 4.4 7.9 5.0 5.6 7.3 7.6 15.4 7.7 9.5 9.5 7.8 11.0 18.1 19.7 10.2 6.8 8.6 11.7 13.6 7.4
Intensity Change (Log2) -0.13 0.31 -0.24 0.26 0.08 0.15 0.2 0.11 0.46 1.11 1.3 0.19 0.25 0.27 -0.35 0.01 0.1


Localization RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3
Cortical Patches 1.5 0.1 -0.4 -0.6 0.5 -0.6 -0.6 0.9 -0.8 -2.9 -2.7 -4.0 -2.7 -3.3
Bud 0.6 -0.9 0.3 -1.6 -1.0 -2.0 0.2 -0.5 -2.2 -1.6 -1.4 -1.7 -3.0 -2.4
Bud Neck 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Site 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cell Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cytoplasm 2.2 4.1 3.6 6.2 3.6 6.2 4.8 4.6 4.2 5.2 4.4 7.7 6.3 7.8
Endoplasmic Reticulum 0 0 0 0 0 2.5 3.5 4.2 3.1 3.2 4.2 0 0 0
Endosome 1.0 -2.2 1.5 -1.6 -0.7 -1.3 -2.0 -2.8 -1.5 -5.2 -4.7 -0.6 0.1 -2.2
Golgi -1.6 4.4 -3.8 -0.5 -0.9 -0.3 0.5 1.0 4.1 5.7 5.1 1.8 2.2 2.4
Mitochondria 0 0 5.8 0 3.7 0 3.0 2.9 0 0 0 0 0 0
Nucleus 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nuclear Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nucleolus -1.2 -2.4 1.9 -0.9 0 -0.4 0.4 0.6 -1.7 -2.7 -1.2 -1.5 -1.1 -1.5
Peroxisomes -0.7 -5.4 -4.8 -6.2 -4.6 -5.1 -5.6 -6.4 -4.6 -5.9 -5.0 -4.2 -4.8 -4.2
SpindlePole 0.3 -2.4 -4.1 -5.0 -4.9 -5.6 -5.5 -6.3 -4.1 -6.8 -6.4 -3.9 -2.6 -4.1
Vacuole -0.4 -0.1 2.1 3.1 2.5 -0.1 1.5 0.9 0 0 0 0.9 2.6 1.9

Images

Circle plot not available

Protein Concentration and Protein Localization Data

R1 R2 R3
G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase
Concentration 21.3432 24.2179 22.6437 23.4316 18.5431 24.0923 21.2821 27.6074 25.0764 23.8243 25.1961 24.8172 28.5972 39.4032 29.9478 28.4963 26.6458 30.5899
Actin 0.1848 0.2252 0.2737 0.1604 0.0289 0.2765 0.1943 0.2823 0.2896 0.2755 0.1508 0.2692 0.2321 0.1651 0.2233 0.051 0.3043 0.3148
Bud 0.0006 0.0034 0.001 0.0008 0.0012 0.0003 0.0018 0.0026 0.0029 0.0039 0.0008 0.0007 0.0017 0.0046 0.0037 0.005 0.0004 0.0011
Bud Neck 0.0005 0.0011 0.0027 0.0051 0.0009 0.0016 0.0027 0.0009 0.002 0.0107 0.0009 0.0011 0.0011 0.001 0.0008 0.0017 0.0027 0.0018
Bud Periphery 0.0004 0.0016 0.0006 0.0005 0.0006 0.0002 0.0017 0.0011 0.0013 0.0033 0.0005 0.0006 0.001 0.0016 0.0025 0.0034 0.0002 0.0006
Bud Site 0.0018 0.0102 0.0036 0.0011 0.0015 0.0005 0.0132 0.023 0.0051 0.0114 0.0011 0.0008 0.0099 0.0315 0.0089 0.0153 0.0007 0.0017
Cell Periphery 0.0001 0.0011 0.0001 0.0008 0.0001 0.0001 0.0012 0.0001 0.0001 0.0025 0.0001 0.0001 0.0002 0.0002 0.0001 0.0007 0 0.0001
Cytoplasm 0.0108 0.0402 0.0044 0.0068 0.0076 0.0046 0.0256 0.0263 0.0311 0.0353 0.004 0.027 0.0089 0.0176 0.0242 0.0014 0.0591 0.0051
Cytoplasmic Foci 0.3417 0.3265 0.2996 0.4027 0.5378 0.3042 0.2768 0.3085 0.3075 0.2727 0.4149 0.3487 0.3226 0.3361 0.2692 0.3456 0.2097 0.3058
Eisosomes 0.0001 0.0002 0.0002 0.0002 0 0.0002 0.0008 0.0001 0.0002 0.0004 0.0002 0.0002 0.0006 0.0001 0.0001 0.0002 0.0001 0.0001
Endoplasmic Reticulum 0.0003 0.0002 0.0006 0.0005 0.0003 0.0001 0.0056 0.0001 0.0004 0.0005 0.0001 0.003 0.0003 0.0001 0.0008 0.0001 0.0003 0.0001
Endosome 0.0183 0.0101 0.0102 0.03 0.0461 0.0078 0.0462 0.0089 0.0059 0.0251 0.0335 0.038 0.0116 0.02 0.0072 0.0093 0.018 0.0159
Golgi 0.0579 0.0336 0.0374 0.028 0.0231 0.0379 0.0506 0.025 0.0299 0.0199 0.0817 0.1017 0.0434 0.0247 0.0374 0.024 0.0568 0.0517
Lipid Particles 0.0584 0.0363 0.0309 0.03 0.0249 0.0548 0.053 0.0291 0.0132 0.0092 0.0726 0.0447 0.0659 0.0388 0.0126 0.0469 0.0339 0.0317
Mitochondria 0.0083 0.0084 0.0072 0.0032 0.0037 0.0037 0.0225 0.0093 0.0216 0.0314 0.0058 0.0076 0.0144 0.0088 0.0091 0.009 0.0019 0.004
None 0.0003 0.001 0.0015 0.0005 0.0022 0.0002 0.0118 0.0003 0.0014 0.0037 0.0002 0.0003 0.0054 0.0003 0.0065 0.0002 0.0003 0.0001
Nuclear Periphery 0.0009 0.0003 0.001 0.0015 0.0003 0.0001 0.0252 0.0001 0.0008 0.0011 0.0001 0.0035 0.0007 0.0007 0.0008 0.0001 0.0009 0.0003
Nucleolus 0.0146 0.0261 0.0003 0.0047 0.0018 0.0002 0.0011 0.0002 0.0003 0.0091 0.0002 0.0012 0.0017 0.0023 0.0013 0.0038 0.0001 0.0128
Nucleus 0.0042 0.0023 0.0003 0.0023 0.0009 0.0001 0.0123 0.0002 0.0044 0.003 0.0001 0.0003 0.0007 0.0123 0.0106 0.001 0.0013 0.0009
Peroxisomes 0.2895 0.2586 0.3206 0.3 0.3003 0.2987 0.2291 0.2748 0.2764 0.2232 0.2285 0.1456 0.2562 0.3214 0.3771 0.4779 0.3047 0.244
Punctate Nuclear 0.0054 0.011 0.0035 0.0105 0.0092 0.008 0.0196 0.0029 0.0049 0.0412 0.0032 0.004 0.0208 0.0115 0.0032 0.0016 0.0035 0.0068
Vacuole 0.0006 0.0022 0.0003 0.0058 0.0059 0.0002 0.0026 0.0035 0.0006 0.0153 0.0005 0.0006 0.0004 0.0009 0.0003 0.0011 0.0008 0.0004
Vacuole Periphery 0.0005 0.0007 0.0003 0.0046 0.0025 0.0002 0.0023 0.0009 0.0003 0.0018 0.0003 0.0011 0.0005 0.0003 0.0002 0.0006 0.0003 0.0002

Sequencing Data

R1 R2
G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Post-START S/G2 Metaphase Anaphase Telophase
Gene Expression 76.2722 43.94 74.2053 196.1304 83.5073 83.006 91.9193 164.4042 214.2742 135.8879
Translational Efficiency 1.5939 1.2501 1.6255 1.0366 2.0179 2.7899 1.6639 1.4724 1.7993 1.7002

Hit Data

Dataset Hit
Protein Concentration
Protein Localization
Gene Expression
Translational Efficiency
Standard name
Human Ortholog
Description Nicotinamidase that converts nicotinamide to nicotinic acid; part of the NAD(+) salvage pathway; required for life span extension by calorie restriction; lacks a peroxisomal targeting signal but is imported into peroxisomes via binding to Gpd1p; PNC1 expression responds to all known stimuli that extend replicative life span; protein increases in abundance and relative distribution to cytoplasmic foci decreases upon DNA replication stress
Localization
Cell Percentages cytoplasm (14%), actin (10%), mixed (39%)
Cell Cycle Regulation No
Subcompartmental Group N/A

Pnc1

Pnc1


Nearest neighbours ( genes)

correlation threshold

0.6

1.0

0.80


Biological Process (Gene Ontology)

Molecular Function (Gene Ontology)

Cellular Component (Gene Ontology)


Endocytosis
Temp Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Vph1-GFP)
37℃
RT
Cell Cycle Omics

CYCLoPs (Pnc1-GFP)
Gene / Allele Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Sac6-tdTomato)
Gene Images
Gene Images
Images are not yet available
Images are not yet available