Standard name
Human Ortholog
Description Ski complex component and WD-repeat protein; mediates 3'-5' RNA degradation by the cytoplasmic exosome; also required for meiotic double-strand break recombination; null mutants have superkiller phenotype

Micrographs

ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Neck 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Site 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cell Periphery 0 0 0.05 0 0 0 0 0 0.06 0.06 0 0.08 0 0 0 0.05 0.05 0.06 0 0 0 0 0 0
Cytoplasm 0.98 0.97 0.93 0.9 0.84 0.76 0.63 0.59 0.52 0.5 0.5 0.5 0.99 0.96 0.97 0.94 0.91 0.94 0.93 0.9 0.83 0.81 0.91 0.9
Endoplasmic Reticulum 0 0 0 0 0 0 0.07 0.08 0.06 0.06 0.06 0.07 0 0 0 0.05 0 0.06 0 0 0.07 0 0 0
Endosome 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Golgi 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Mitochondria 0 0 0 0.19 0.13 0.35 0.41 0.34 0.48 0.49 0.51 0.5 0 0 0 0 0 0 0 0 0 0 0 0
Nucleus 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nuclear Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nucleolus 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Peroxisomes 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
SpindlePole 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Vac/Vac Membrane 0 0 0 0 0.1 0 0 0.1 0.08 0.09 0 0.05 0 0 0 0 0.06 0 0 0 0 0.07 0 0
ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0 0 1 1 2 5 5 2 5 11 3 12 0 2 0 1 1 0 0 0 0 0 0 1
Bud 1 3 0 3 4 3 9 6 11 9 6 6 0 0 0 0 0 0 0 2 1 0 1 3
Bud Neck 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1
Bud Site 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
Cell Periphery 0 2 12 9 11 12 18 18 23 33 13 35 2 7 8 14 12 10 0 0 0 0 0 0
Cytoplasm 132 120 210 208 334 253 356 396 216 283 147 216 218 325 347 266 238 170 128 122 204 58 182 253
Endoplasmic Reticulum 1 3 10 6 7 14 41 51 24 35 17 29 4 11 8 15 9 10 3 4 17 1 1 8
Endosome 0 0 0 0 5 0 1 1 6 5 2 3 0 2 1 1 1 0 1 0 0 0 0 0
Golgi 0 0 0 1 2 0 0 3 2 0 2 1 1 0 0 0 2 1 0 0 1 0 0 0
Mitochondria 4 1 1 44 51 116 229 227 199 274 148 216 0 1 0 2 2 0 1 0 5 2 1 2
Nucleus 0 0 0 0 0 1 2 3 1 1 0 2 1 1 3 3 0 3 0 0 1 1 1 0
Nuclear Periphery 0 0 0 0 0 1 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nucleolus 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Peroxisomes 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
SpindlePole 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Vac/Vac Membrane 0 1 1 4 41 3 19 64 32 50 11 23 0 1 3 6 16 5 0 3 5 5 8 8
Unique Cell Count 135 124 226 231 399 335 561 670 417 564 292 436 221 337 357 282 261 181 138 136 245 72 200 282
Labelled Cell Count 138 130 235 276 457 408 681 772 521 703 349 543 226 350 370 308 281 199 138 136 245 72 200 282


Cytoplasm

(Huh et al. Nature 2003 425:686)
Screen WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 AF100 AF140 AF180
Mean Cell GFP Intensity (1e-4) 8.5 9.3 9.8 8.6 9.3 7.7 7.9 8.1 8.1 7.8 7.6 7.7 11.2 10.8 10.4 13.5 13.4 12.8 10.1 10.3 10.8
Std Deviation (1e-4) 1.7 2.3 1.7 1.8 7.9 1.8 2.1 1.9 1.8 1.7 2.0 1.7 2.4 2.5 2.2 2.3 2.4 2.0 1.8 2.4 2.3
Intensity Change (Log2) -0.19 -0.07 -0.33 -0.31 -0.27 -0.28 -0.32 -0.37 -0.34 0.2 0.15 0.09 0.47 0.46 0.39 0.05 0.07 0.15


Localization RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3
Cortical Patches 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Neck 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Site 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cell Periphery -0.7 -1.6 -1.0 -1.4 -1.9 0.1 0.3 -0.5 1.3 -2.7 -2.1 -2.0 -0.2 -0.4 0.1
Cytoplasm -1.1 -3.3 -5.3 -8.3 -9.4 -10.5 -11.2 -10.4 -11.0 3.0 1.9 2.4 0.6 -0.7 0.4
Endoplasmic Reticulum -1.1 -2.0 -0.1 1.5 1.6 0.7 1.0 0.7 1.2 -1.6 -0.7 -1.5 0.5 -0.6 0.5
Endosome 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Golgi 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Mitochondria 6.7 5.4 9.8 11.3 10.0 12.4 12.8 12.5 12.8 0 0 0 0 0 0
Nucleus 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nuclear Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nucleolus 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Peroxisomes 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
SpindlePole 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Vacuole 0 4.7 0 2.4 4.6 4.0 4.4 2.5 3.2 0 0 0 0 3.4 0

Images

Circle plot not available

Protein Concentration and Protein Localization Data

R1 R2 R3
G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase
Concentration 2.885 5.1466 3.7145 4.0957 3.8705 4.268 2.5668 4.1989 4.0577 3.6183 3.6726 3.9388 2.7794 5.032 4.0475 4.6403 3.2237 3.9149
Actin 0.0113 0.0006 0.0034 0.0008 0.001 0.0021 0.0351 0.001 0.0086 0.0035 0.0243 0.003 0.0149 0.0007 0.0014 0.0002 0.0184 0.0055
Bud 0.0006 0.0013 0.0012 0.0007 0.0011 0.0005 0.0008 0.0011 0.0012 0.0013 0.0005 0.0003 0.0004 0.0006 0.0006 0.0003 0.0002 0.0002
Bud Neck 0.0008 0.0005 0.0008 0.0005 0.0009 0.0015 0.0008 0.0002 0.0003 0.004 0.0006 0.0021 0.0009 0.0003 0.0007 0.0004 0.0011 0.0008
Bud Periphery 0.0005 0.0008 0.0009 0.0007 0.0006 0.0003 0.0009 0.0004 0.0005 0.0013 0.0004 0.0004 0.0003 0.0002 0.0003 0 0.0003 0.0001
Bud Site 0.0011 0.0087 0.002 0.0004 0.0009 0.0002 0.0025 0.0029 0.0018 0.0022 0.0012 0.0006 0.0007 0.0083 0.001 0.0001 0.0002 0.0003
Cell Periphery 0.0004 0.0004 0.0003 0.0003 0.0001 0.0001 0.0003 0.0002 0.0001 0.0002 0.0001 0.0001 0.0002 0.0002 0.0002 0 0.0002 0.0001
Cytoplasm 0.704 0.8457 0.8023 0.7454 0.7719 0.8056 0.6998 0.9215 0.8376 0.7233 0.7109 0.8312 0.7264 0.9235 0.8675 0.7993 0.773 0.87
Cytoplasmic Foci 0.0358 0.0275 0.0342 0.0353 0.0587 0.0364 0.034 0.0195 0.0285 0.0588 0.031 0.0318 0.0203 0.013 0.0185 0.0178 0.0177 0.0196
Eisosomes 0.0001 0 0 0 0 0 0.0002 0 0.0001 0.0001 0.0001 0 0.0001 0 0.0001 0 0.0004 0
Endoplasmic Reticulum 0.0366 0.0174 0.0078 0.0149 0.0089 0.0157 0.0262 0.0043 0.0052 0.0044 0.0035 0.0082 0.0664 0.0095 0.0114 0.0156 0.0133 0.0232
Endosome 0.1139 0.0618 0.0865 0.1082 0.1223 0.1023 0.0902 0.0301 0.0528 0.0892 0.0932 0.0672 0.0899 0.0204 0.0572 0.0933 0.0926 0.0538
Golgi 0.0144 0.0061 0.0074 0.0068 0.0059 0.0112 0.0243 0.0024 0.0065 0.0253 0.0604 0.0127 0.0053 0.0021 0.0025 0.0015 0.0082 0.0052
Lipid Particles 0.002 0.0003 0.0007 0.0008 0.0004 0.0002 0.0078 0.0003 0.0031 0.0027 0.0235 0.0024 0.0021 0.0003 0.0006 0.0001 0.0019 0.0015
Mitochondria 0.0126 0.0046 0.0033 0.0241 0.0032 0.0089 0.0165 0.0006 0.0161 0.0577 0.0104 0.0176 0.0021 0.0004 0.0012 0.0009 0.0036 0.0041
None 0.0264 0.0035 0.017 0.0358 0.0047 0.0026 0.025 0.0083 0.0128 0.0013 0.0018 0.0086 0.0271 0.0147 0.0105 0.0018 0.0028 0.0019
Nuclear Periphery 0.0058 0.0021 0.0013 0.0017 0.0011 0.001 0.0049 0.0007 0.001 0.0011 0.0141 0.0015 0.0166 0.0008 0.0044 0.0194 0.0462 0.0034
Nucleolus 0.0038 0.0001 0.0058 0.0001 0.0001 0 0.0004 0 0.0001 0.0002 0.0003 0.0001 0.0001 0 0.0005 0.0001 0.0005 0.0001
Nucleus 0.0063 0.0021 0.0022 0.0014 0.0013 0.0009 0.0017 0.0009 0.0009 0.0013 0.0016 0.001 0.0071 0.0009 0.0034 0.0268 0.0051 0.0018
Peroxisomes 0.001 0.0001 0.0019 0.0003 0.0004 0.0006 0.0147 0.0002 0.0122 0.005 0.0079 0.0036 0.0003 0.0001 0.0003 0 0.0003 0.0012
Punctate Nuclear 0.0014 0.0004 0.0006 0.0004 0.0004 0.0004 0.0022 0.0003 0.0005 0.0007 0.0013 0.0004 0.0014 0.0001 0.0021 0.0003 0.0047 0.0017
Vacuole 0.0173 0.0138 0.0163 0.0155 0.0129 0.0065 0.0089 0.0042 0.0083 0.0124 0.0072 0.005 0.0142 0.0033 0.0128 0.0162 0.0045 0.0037
Vacuole Periphery 0.004 0.0023 0.004 0.0061 0.0032 0.0033 0.0028 0.0009 0.0021 0.0043 0.0058 0.0022 0.0033 0.0007 0.0029 0.0058 0.0048 0.0018

Sequencing Data

R1 R2
G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Post-START S/G2 Metaphase Anaphase Telophase
Gene Expression 30.4961 28.9139 38.0066 34.4551 32.9496 21.2431 30.4877 35.7986 29.722 33.9496
Translational Efficiency 1.5634 1.5612 1.0336 1.1232 1.1399 1.997 1.5203 0.9633 1.1163 1.0947

Hit Data

Dataset Hit
Protein Concentration
Protein Localization
Gene Expression
Translational Efficiency

Micrographs

Cell Count

R1 R2 R1 & R2
WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14
797 195 1134 1181 1153 1551 126 1133 1950 1746 1260 2314

Protein Abundance

R1 R2 R1 & R2
WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14
Mean 906.16 1033.00 1391.77 1500.22 906.82 960.42 1553.52 1416.88 906.55 968.53 1407.94 1459.41
Standard Deviation 141.93 185.17 231.06 264.96 171.97 176.91 241.65 249.37 160.37 179.31 237.16 260.80
Intensity Change Log 2 0.189003 0.619083 0.727336 0.082849 0.776653 0.643829 0.136883 0.700047 0.686172

Localization Score (DeepLoc)

R1 R2 R1 & R2
WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14
Actin 0.000694 0.002288 0.000323 0.001079 0.000312 0.000529 0.002076 0.000547 0.000468 0.000725 0.000498 0.000818
Bud Neck 0.004083 0.006323 0.000688 0.001818 0.001699 0.001596 0.003849 0.001410 0.002673 0.002124 0.001004 0.001618
Bud Site 0.045114 0.082520 0.017686 0.036816 0.026700 0.038412 0.049508 0.034230 0.034226 0.043338 0.020868 0.035550
Cell Periphery 0.000606 0.000586 0.000337 0.002602 0.000254 0.000245 0.000643 0.001319 0.000398 0.000283 0.000368 0.001974
Cytoplasm 0.468049* 0.417989* 0.825917* 0.781653* 0.599722* 0.623193* 0.514140* 0.744916* 0.545905* 0.600275* 0.794740* 0.763665*
Cytoplasmic Foci 0.331904* 0.336330* 0.069722 0.036205 0.221878* 0.231673* 0.186166* 0.059545 0.266847* 0.243361* 0.081366 0.047633
Eisosomes 0.000102 0.000065 0.000003 0.000009 0.000021 0.000027 0.000018 0.000006 0.000054 0.000031 0.000004 0.000008
Endoplasmic Reticulum 0.014945 0.008058 0.006622 0.001996 0.014324 0.005674 0.005346 0.001889 0.014578 0.005940 0.006494 0.001944
Endosome 0.031131 0.042848 0.007742 0.006587 0.018700 0.019212 0.038695 0.011189 0.023781 0.021852 0.010837 0.008840
Golgi 0.031490 0.025630 0.020506 0.015503 0.015757 0.026062 0.015547 0.014600 0.022188 0.026014 0.020010 0.015061
Lipid Particles 0.004232 0.003752 0.002204 0.009342 0.003402 0.002011 0.008933 0.005150 0.003741 0.002205 0.002877 0.007289
Mitochondria 0.004991 0.003831 0.000133 0.002040 0.002806 0.004279 0.000208 0.001443 0.003699 0.004229 0.000141 0.001748
Mitotic Spindle 0.000556 0.000927 0.005420 0.003236 0.002041 0.001824 0.010498 0.006382 0.001434 0.001723 0.005928 0.004776
None 0.000860 0.000197 0.000307 0.000101 0.002808 0.000605 0.000080 0.000228 0.002012 0.000560 0.000284 0.000163
Nuclear Periphery 0.000083 0.000091 0.000066 0.000052 0.000262 0.000049 0.000473 0.000188 0.000189 0.000054 0.000106 0.000119
Nuclear Periphery Foci 0.000964 0.001040 0.003227 0.001713 0.001213 0.000640 0.006327 0.001890 0.001111 0.000684 0.003537 0.001799
Nucleolus 0.000573 0.000087 0.000028 0.000092 0.000313 0.000613 0.000041 0.000112 0.000420 0.000555 0.000029 0.000102
Nucleus 0.003868 0.003031 0.003288 0.002610 0.008831 0.002744 0.003977 0.003255 0.006803 0.002776 0.003357 0.002926
Peroxisomes 0.001464 0.002010 0.000158 0.000854 0.000646 0.001124 0.001378 0.001320 0.000980 0.001223 0.000280 0.001082
Vacuole 0.035713 0.044788 0.024887 0.085118 0.049606 0.025811 0.138846 0.100604 0.043928 0.027930 0.036283 0.092700
Vacuole Periphery 0.018577 0.017609 0.010736 0.010572 0.028705 0.013676 0.013252 0.009779 0.024565 0.014115 0.010987 0.010183

Localization Changes (T-score)

R1 R2 R1 & R2
UBP2_WT UBP14_WT UBP2UBP14_WT UBP2UBP14_UBP2 UBP2UBP14_UBP14 UBP2_WT UBP14_WT UBP2UBP14_WT UBP2UBP14_UBP2 UBP2UBP14_UBP14 UBP2_WT UBP14_WT UBP2UBP14_WT UBP2UBP14_UBP2 UBP2UBP14_UBP14
Actin -1.28 3.19 -2.23 0.94 -4.88 -1.80 -3.07 -2.95 -0.21 2.60 -1.43 -0.41 -3.74 -0.61 -3.08
Bud Neck -0.91 6.27 3.97 1.85 -8.23 0.25 -3.89 0.68 1.02 5.16 1.31 5.40 3.24 1.51 -5.87
Bud Site -4.64 10.43 2.95 5.81 -8.18 -5.37 -4.38 -2.94 1.96 2.86 -4.27 7.54 -0.41 3.89 -7.90
Cell Periphery 0.23 5.23 -6.49 -6.41 -7.53 0.17 -4.61 -3.44 -3.45 -2.06 4.02 1.03 -7.23 -7.79 -7.38
Cytoplasm 2.32 -31.22 -26.08 -17.37 5.07 -2.03 2.97 -12.00 -10.86 -8.12 -5.60 -25.95 -25.12 -17.85 4.05
Cytoplasmic Foci -0.26 32.12 37.82 19.76 9.03 -1.19 2.79 24.90 28.48 9.05 3.37 32.03 42.84 36.23 9.17
Eisosomes 2.17 10.48 9.78 3.99 -5.51 -1.71 1.04 9.60 6.54 5.22 4.36 12.24 11.37 7.26 -4.66
Endoplasmic Reticulum 1.79 3.35 5.81 1.95 4.01 4.57 4.60 7.59 3.57 2.59 5.31 4.89 9.52 4.10 4.39
Endosome -2.35 12.19 12.84 7.79 1.65 -0.33 -4.50 5.80 6.06 6.50 1.31 10.87 13.67 10.83 2.48
Golgi 2.31 5.79 7.53 4.18 2.83 -6.72 0.39 1.20 6.58 0.30 -2.73 1.73 5.85 7.54 3.62
Lipid Particles 0.44 4.21 -4.94 -3.97 -7.37 2.46 -4.23 -2.69 -4.75 2.89 3.23 2.16 -5.76 -7.64 -7.31
Mitochondria 0.44 3.19 1.76 0.81 -1.92 -1.61 6.40 2.04 2.82 -1.81 -0.51 5.38 2.43 2.72 -2.68
Mitotic Spindle -1.98 -7.58 -2.55 -2.17 2.09 0.21 -3.39 -2.57 -2.67 1.40 -0.77 -6.62 -3.33 -2.85 1.25
None 2.01 1.72 2.28 1.56 7.17 2.38 3.16 3.00 2.31 -1.74 2.47 3.31 3.53 2.72 2.83
Nuclear Periphery -0.16 0.77 1.22 1.00 0.86 3.09 -0.63 0.57 -1.16 0.83 3.17 1.61 1.02 -1.08 -0.18
Nuclear Periphery Foci -0.10 -4.61 -2.02 -2.19 4.16 1.65 -6.01 -1.57 -2.65 4.90 1.41 -6.64 -2.54 -3.63 4.66
Nucleolus 1.86 2.06 1.85 -0.32 -10.81 -0.93 4.64 3.35 1.36 -6.87 -0.51 3.27 2.70 1.38 -12.68
Nucleus 1.04 0.78 0.56 -0.68 -0.24 5.10 2.14 4.26 -1.57 1.27 5.01 4.30 4.17 -1.63 -0.15
Peroxisomes -2.30 10.41 4.31 5.58 -8.54 -4.37 -3.34 -2.62 -0.55 0.22 -2.20 11.38 -0.48 1.16 -6.18
Vacuole -1.40 3.01 -11.27 -6.50 -14.30 6.75 -5.70 -9.50 -14.98 2.11 6.01 1.84 -14.00 -19.43 -14.84
Vacuole Periphery 0.22 4.28 4.94 1.80 0.48 6.37 3.41 8.22 3.07 0.70 6.07 7.68 9.55 3.66 0.92
Standard name
Human Ortholog
Description Ski complex component and WD-repeat protein; mediates 3'-5' RNA degradation by the cytoplasmic exosome; also required for meiotic double-strand break recombination; null mutants have superkiller phenotype
Localization
Cell Percentages cytoplasm (95%)
Cell Cycle Regulation No
Subcompartmental Group cytoplasm-5

Ski8

Ski8


Nearest neighbours ( genes)

correlation threshold

0.6

1.0

0.80


Biological Process (Gene Ontology)

Molecular Function (Gene Ontology)

Cellular Component (Gene Ontology)


Endocytosis
Temp Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Vph1-GFP)
37℃
RT
Cell Cycle Omics

CYCLoPs (Ski8-GFP)
Gene / Allele Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Sac6-tdTomato)
Gene Images
Gene Images
Images are not yet available
Images are not yet available