Standard name | |
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Human Ortholog | |
Description | Essential component of CPF (cleavage and polyadenylation factor); involved in 3' end formation of snoRNA and mRNA; interacts directly with Pta1p; relocalizes to the cytosol in response to hypoxia; similar to mammalian Cleavage-Stimulation Factor CstF-64 |
ensLOC | DeepLoc | |||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Localization | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | WT1 | WT2 | WT3 | AF100 | AF140 | AF180 |
Cortical Patches | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud | 0 | 0 | 0 | 0 | 0 | 0 | 3 | 1 | 1 | 0 | 3 | 1 | 0 | 1 | 0 | 1 | 0 | 0 | 0 | 1 | 0 | 1 | 3 | 5 |
Bud Neck | 0 | 0 | 1 | 0 | 0 | 0 | 4 | 0 | 3 | 1 | 5 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
Bud Site | 0 | 0 | 0 | 0 | 2 | 5 | 6 | 6 | 2 | 6 | 11 | 8 | 0 | 0 | 0 | 0 | 0 | 0 | – | – | – | – | – | – |
Cell Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 2 | 3 | 9 | 10 | 8 | 12 | 16 | 19 | 14 | 18 | 11 | 9 | 29 | 56 | 75 | 17 | 16 | 21 | 1 | 0 | 0 | 1 | 1 | 0 |
Endoplasmic Reticulum | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 3 | 1 | 4 | 0 | 0 | 0 | 0 | 0 | 1 |
Endosome | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 3 | 0 | 4 | 4 | 2 | 0 | 0 | 3 | 3 | 1 |
Golgi | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 3 | 1 | 1 | 0 | 0 | 2 | 1 | 0 |
Mitochondria | 9 | 1 | 2 | 0 | 1 | 13 | 25 | 17 | 10 | 42 | 40 | 34 | 0 | 0 | 1 | 1 | 13 | 3 | 0 | 0 | 3 | 1 | 1 | 5 |
Nucleus | 224 | 123 | 137 | 117 | 172 | 263 | 323 | 275 | 222 | 260 | 221 | 240 | 216 | 333 | 369 | 203 | 283 | 254 | 218 | 125 | 138 | 151 | 244 | 247 |
Nuclear Periphery | 2 | 0 | 0 | 1 | 1 | 4 | 4 | 2 | 1 | 2 | 3 | 3 | 1 | 2 | 2 | 0 | 5 | 2 | 0 | 0 | 0 | 1 | 0 | 0 |
Nucleolus | 30 | 20 | 9 | 16 | 35 | 79 | 129 | 89 | 101 | 163 | 148 | 156 | 17 | 11 | 32 | 9 | 23 | 24 | 8 | 3 | 6 | 8 | 15 | 33 |
Peroxisomes | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 5 | 13 | 1 | 2 | 0 | 1 | 0 | 1 | 1 | 3 | 6 |
Vac/Vac Membrane | 3 | 0 | 2 | 1 | 1 | 2 | 3 | 9 | 2 | 8 | 5 | 4 | 0 | 2 | 4 | 5 | 10 | 7 | 2 | 4 | 2 | 10 | 13 | 37 |
Unique Cell Count | 238 | 127 | 153 | 135 | 193 | 306 | 411 | 349 | 288 | 378 | 317 | 337 | 248 | 399 | 475 | 228 | 332 | 303 | 238 | 136 | 157 | 187 | 295 | 345 |
Labelled Cell Count | 271 | 147 | 160 | 145 | 220 | 378 | 514 | 418 | 356 | 500 | 449 | 458 | 264 | 412 | 502 | 241 | 360 | 320 | 238 | 136 | 157 | 187 | 295 | 345 |
Screen | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | AF100 | AF140 | AF180 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Mean Cell GFP Intensity (1e-4) | 8.8 | 10.8 | 10.0 | 9.3 | 9.0 | 8.1 | 7.6 | 8.3 | 7.9 | 7.9 | 7.2 | 7.3 | 10.4 | 10.8 | 9.9 | 10.9 | 10.2 | 10.5 | 9.6 | 10.9 | 11.2 |
Std Deviation (1e-4) | 1.9 | 2.9 | 3.8 | 2.6 | 3.3 | 3.1 | 2.7 | 3.5 | 3.8 | 3.9 | 3.1 | 2.9 | 2.8 | 3.0 | 3.0 | 2.7 | 2.4 | 2.4 | 2.1 | 2.1 | 2.1 |
Intensity Change (Log2) | – | – | – | -0.11 | -0.16 | -0.31 | -0.39 | -0.27 | -0.34 | -0.34 | -0.47 | -0.46 | 0.06 | 0.1 | -0.02 | 0.13 | 0.03 | 0.07 | -0.07 | 0.12 | 0.16 |
Localization | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Cortical Patches | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cell Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 0.5 | -0.7 | -0.9 | -1.0 | -0.2 | -0.5 | -0.5 | -1.2 | -1.8 | 1.9 | 2.7 | 3.1 | 0.6 | -0.5 | 0.4 |
Endoplasmic Reticulum | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Endosome | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Golgi | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Mitochondria | 0 | 0 | 1.7 | 2.4 | 1.9 | 0 | 3.7 | 4.0 | 3.5 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleus | -0.8 | -0.1 | -1.1 | -3.0 | -2.9 | -3.2 | -5.0 | -4.7 | -4.5 | -0.7 | -1.8 | -3.2 | -0.2 | -1.3 | -1.6 |
Nuclear Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleolus | 1.8 | 3.4 | 5.1 | 6.3 | 5.1 | 6.7 | 8.3 | 8.8 | 8.8 | 0.4 | -1.8 | 0.4 | -0.9 | 0.4 | 0.8 |
Peroxisomes | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Vacuole | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
R1 | R2 | R3 | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Concentration | 8.6942 | 8.9067 | 8.1227 | 7.5094 | 7.1785 | 7.8324 | 5.0579 | 6.7707 | 6.3906 | 6.1166 | 5.8348 | 5.9215 | 6.8412 | 7.2815 | 6.1948 | 6.6719 | 5.6618 | 6.5539 |
Actin | 0.0059 | 0 | 0.0001 | 0 | 0 | 0 | 0.0434 | 0.0006 | 0.0014 | 0 | 0.0401 | 0.0007 | 0.0017 | 0.0002 | 0.0008 | 0.0006 | 0.0004 | 0.0008 |
Bud | 0.0002 | 0 | 0 | 0 | 0 | 0 | 0.0013 | 0.001 | 0.0006 | 0 | 0.0071 | 0.0001 | 0.0007 | 0 | 0.0002 | 0.0004 | 0.0003 | 0.0001 |
Bud Neck | 0.0002 | 0 | 0 | 0 | 0.0001 | 0.0004 | 0.0013 | 0.0002 | 0.0002 | 0 | 0.0016 | 0.0005 | 0.0008 | 0 | 0.0014 | 0.0003 | 0.0009 | 0.0004 |
Bud Periphery | 0.0002 | 0 | 0 | 0 | 0.0001 | 0 | 0.0016 | 0.0004 | 0.0011 | 0 | 0.0428 | 0.0003 | 0.0027 | 0 | 0.0003 | 0.0002 | 0.0003 | 0.0001 |
Bud Site | 0.0012 | 0 | 0.0001 | 0 | 0.0001 | 0 | 0.008 | 0.013 | 0.0029 | 0 | 0.0019 | 0.0002 | 0.0024 | 0 | 0.0026 | 0.0008 | 0.0006 | 0.0001 |
Cell Periphery | 0.0001 | 0 | 0 | 0 | 0 | 0 | 0.0005 | 0.0001 | 0.0004 | 0 | 0.0038 | 0.0001 | 0.0022 | 0 | 0.0002 | 0 | 0.0002 | 0 |
Cytoplasm | 0.001 | 0 | 0.0004 | 0 | 0 | 0 | 0.0218 | 0.0026 | 0.0007 | 0 | 0.0025 | 0.0003 | 0.0067 | 0.0001 | 0.0023 | 0.0157 | 0.008 | 0.0009 |
Cytoplasmic Foci | 0.0019 | 0 | 0.0057 | 0 | 0 | 0 | 0.0478 | 0.0015 | 0.0056 | 0 | 0.0108 | 0.0045 | 0.0191 | 0.0003 | 0.0143 | 0.0084 | 0.0108 | 0.0024 |
Eisosomes | 0 | 0 | 0 | 0 | 0 | 0 | 0.0003 | 0 | 0.0001 | 0 | 0.0003 | 0 | 0.0001 | 0 | 0 | 0 | 0 | 0 |
Endoplasmic Reticulum | 0.0002 | 0 | 0.0001 | 0 | 0 | 0 | 0.0066 | 0 | 0.0009 | 0 | 0.0087 | 0.0004 | 0.0015 | 0 | 0.0011 | 0.0007 | 0.003 | 0.0007 |
Endosome | 0.0011 | 0 | 0.0003 | 0 | 0 | 0 | 0.0307 | 0.0005 | 0.0035 | 0 | 0.037 | 0.015 | 0.0152 | 0.0002 | 0.0093 | 0.0161 | 0.0378 | 0.0036 |
Golgi | 0.0005 | 0 | 0.0001 | 0 | 0 | 0 | 0.0128 | 0.0004 | 0.0018 | 0 | 0.0154 | 0.0054 | 0.0045 | 0.0001 | 0.0022 | 0.003 | 0.0035 | 0.0035 |
Lipid Particles | 0.0009 | 0 | 0.0005 | 0 | 0 | 0 | 0.0509 | 0.0004 | 0.0021 | 0 | 0.0481 | 0.012 | 0.0381 | 0.0001 | 0.0086 | 0.0002 | 0.0236 | 0.0007 |
Mitochondria | 0.0008 | 0.0001 | 0.0001 | 0.0001 | 0.0008 | 0.0001 | 0.0098 | 0.0034 | 0.006 | 0 | 0.0141 | 0.0115 | 0.0141 | 0.0001 | 0.0022 | 0.001 | 0.0029 | 0.0005 |
None | 0.0007 | 0 | 0.0006 | 0 | 0 | 0 | 0.0188 | 0 | 0.0009 | 0 | 0.0007 | 0.0001 | 0.0015 | 0 | 0.0007 | 0.0002 | 0.0017 | 0.0001 |
Nuclear Periphery | 0.0021 | 0.0006 | 0.0008 | 0.0002 | 0.0015 | 0.0004 | 0.0285 | 0.0002 | 0.0038 | 0.0002 | 0.0139 | 0.0048 | 0.0067 | 0.0012 | 0.0043 | 0.0005 | 0.0104 | 0.0055 |
Nucleolus | 0.0242 | 0.0175 | 0.0094 | 0.0088 | 0.1408 | 0.0909 | 0.0317 | 0.0168 | 0.0137 | 0.0079 | 0.1383 | 0.062 | 0.0365 | 0.013 | 0.0139 | 0.0656 | 0.2633 | 0.0665 |
Nucleus | 0.9519 | 0.9795 | 0.9765 | 0.9909 | 0.8545 | 0.9079 | 0.6393 | 0.9577 | 0.9401 | 0.9918 | 0.5762 | 0.8751 | 0.8163 | 0.9745 | 0.9187 | 0.8841 | 0.6139 | 0.9062 |
Peroxisomes | 0.0005 | 0 | 0.0001 | 0 | 0 | 0 | 0.0162 | 0.0002 | 0.001 | 0 | 0.0015 | 0.0008 | 0.0086 | 0.0001 | 0.0024 | 0.0008 | 0.0016 | 0.0002 |
Punctate Nuclear | 0.006 | 0 | 0.0051 | 0.0001 | 0.0016 | 0.0002 | 0.0207 | 0.0001 | 0.011 | 0.0001 | 0.0148 | 0.0024 | 0.0102 | 0.0098 | 0.0105 | 0.0007 | 0.0117 | 0.0072 |
Vacuole | 0.0004 | 0.0005 | 0 | 0 | 0.0001 | 0.0001 | 0.0044 | 0.0005 | 0.0014 | 0 | 0.0151 | 0.0023 | 0.0066 | 0 | 0.0022 | 0.0006 | 0.0035 | 0.0003 |
Vacuole Periphery | 0.0002 | 0.0016 | 0 | 0 | 0.0002 | 0 | 0.0037 | 0.0004 | 0.0009 | 0 | 0.0054 | 0.0015 | 0.0035 | 0 | 0.0019 | 0.0002 | 0.0015 | 0.0002 |
R1 | R2 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Gene Expression | 20.2895 | 14.6644 | 12.5998 | 15.0093 | 13.433 | 12.0807 | 19.3144 | 19.2247 | 16.0837 | 20.4263 |
Translational Efficiency | 1.4685 | 1.7462 | 1.5894 | 0.996 | 1.819 | 2.7199 | 1.3217 | 1.2908 | 1.4453 | 1.5075 |
Dataset | Hit |
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Protein Concentration | ✘ |
Protein Localization | ✘ |
Gene Expression | ✘ |
Translational Efficiency | ✘ |
Temp | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Vph1-GFP) |
---|---|---|---|---|
37℃ | ||||
RT |
Gene / Allele | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Sac6-tdTomato) |
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Gene | Images |
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Gene | Images |
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