Standard name
Human Ortholog
Description Essential protein with two zinc fingers; present in nucleus of growing cells, relocates to cytoplasm in starved cells via a process mediated by Cpr1p; binds translation elongation factor eEF-1 (Tef1p); relative distribution to nucleus increases upon DNA replication stress; human ZPR1 gene can complement yeast by allowing growth during down-regulation of yeast zpr1

Micrographs

ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Neck 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Site 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cell Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cytoplasm 1.0 1.0 0.97 0.83 0.72 0.83 0.69 0.56 0.66 0.68 0.64 0.64 1.0 0.77 0.84 0.71 0.76 0.84 0.96 0.95 0.84 1.0 0.88 0.77
Endoplasmic Reticulum 0 0 0 0 0 0 0 0 0 0 0.05 0 0 0 0 0 0 0 0 0 0 0 0 0
Endosome 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Golgi 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.06 0.06 0 0 0 0 0 0 0
Mitochondria 0 0 0 0 0 0 0 0.05 0.17 0.11 0.06 0.17 0 0 0 0 0 0 0 0 0 0 0 0
Nucleus 0 0 0 0 0 0 0 0 0 0 0.06 0 0 0 0 0 0 0 0 0 0 0 0.06 0.08
Nuclear Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nucleolus 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Peroxisomes 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
SpindlePole 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Vac/Vac Membrane 0 0 0 0.22 0.32 0.15 0.25 0.37 0.14 0.14 0.17 0.15 0 0.35 0.32 0.36 0.28 0.18 0 0 0 0 0 0.07
ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0 0 0 0 1 0 2 1 4 1 4 4 0 0 0 0 0 0 0 0 0 0 0 0
Bud 0 0 0 0 0 0 1 2 0 4 1 0 0 0 0 1 0 1 1 0 2 0 2 2
Bud Neck 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Site 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cell Periphery 1 0 0 0 0 0 3 1 3 7 5 3 0 0 1 1 0 1 0 0 0 0 0 0
Cytoplasm 428 186 156 141 178 222 221 183 137 184 97 119 169 177 233 217 159 202 408 172 131 97 195 152
Endoplasmic Reticulum 0 0 2 0 1 3 5 9 5 5 7 5 0 0 1 8 2 8 1 0 2 0 1 4
Endosome 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
Golgi 0 0 0 0 9 1 4 5 1 2 3 4 0 7 3 18 13 9 0 0 0 0 0 0
Mitochondria 1 0 1 0 0 6 12 15 35 30 9 31 0 0 0 5 2 1 0 0 1 0 0 1
Nucleus 1 0 1 1 4 2 9 9 6 12 9 7 0 1 2 1 0 0 4 1 5 0 12 16
Nuclear Periphery 0 0 0 0 1 0 0 1 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0
Nucleolus 0 0 0 0 1 2 1 2 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 1
Peroxisomes 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
SpindlePole 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0
Vac/Vac Membrane 0 0 3 37 79 41 81 120 28 39 26 28 1 81 88 109 58 42 1 1 5 0 2 13
Unique Cell Count 429 186 161 169 247 268 318 325 207 269 151 187 169 230 279 307 210 240 424 181 156 98 222 199
Labelled Cell Count 431 186 163 179 275 277 339 348 223 287 164 202 170 266 328 360 235 264 424 181 156 98 222 199


Cytoplasm, Nucleus

(Huh et al. Nature 2003 425:686)
Screen WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 AF100 AF140 AF180
Mean Cell GFP Intensity (1e-4) 26.7 30.4 25.0 23.1 22.6 20.2 17.7 18.2 16.8 16.3 15.2 16.5 29.3 28.4 26.0 40.4 49.1 54.4 25.6 26.3 29.8
Std Deviation (1e-4) 4.8 6.2 7.2 7.4 6.0 5.3 5.7 5.3 5.1 4.6 4.5 6.1 6.0 6.4 4.8 17.0 22.1 21.8 5.5 6.0 8.2
Intensity Change (Log2) -0.11 -0.15 -0.31 -0.5 -0.46 -0.57 -0.61 -0.72 -0.6 0.23 0.18 0.05 0.69 0.97 1.12 0.03 0.07 0.25


Localization RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3
Cortical Patches 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Neck 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Site 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cell Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cytoplasm -4.1 -6.4 -4.4 -6.9 -9.2 -7.3 -7.0 -7.4 -7.6 2.3 -5.5 -4.2 -6.7 -5.6 -4.0
Endoplasmic Reticulum 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Endosome 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Golgi 0 0 0 0 0 0 0 0 0 0 0 0 3.1 3.2 0
Mitochondria 0 0 0 0 2.3 5.2 4.1 0 5.1 0 0 0 0 0 0
Nucleus 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nuclear Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nucleolus 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Peroxisomes 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
SpindlePole 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Vacuole 5.6 7.4 4.4 6.4 8.4 4.0 4.3 4.7 4.3 0 7.9 7.4 8.1 6.6 4.9

Images

Circle plot not available

Protein Concentration and Protein Localization Data

R1 R2 R3
G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase
Concentration 17.7641 24.7772 22.234 22.8995 19.5533 22.6129 16.7257 24.1086 21.7891 19.8743 13.7779 20.9614 22.0081 28.3465 25.5284 25.2465 24.2609 24.3769
Actin 0.0095 0.0001 0.0064 0.0001 0.0019 0.0001 0.0199 0.0003 0.0036 0.0007 0.0187 0.0004 0.0118 0.0002 0.0002 0.0002 0.0357 0.0024
Bud 0.0008 0 0.0004 0 0.0001 0.0001 0.0006 0.0001 0.0002 0.0001 0.0013 0.0001 0.0006 0.0001 0.0001 0.0018 0.0001 0.0001
Bud Neck 0.0014 0.0001 0.0004 0.0003 0.0004 0.0009 0.0005 0.0001 0.0003 0.0002 0.0005 0.0007 0.0007 0.0002 0.0002 0.0002 0.0008 0.0006
Bud Periphery 0.0006 0 0.0003 0 0.0001 0 0.0007 0 0.0003 0.0001 0.0026 0 0.0004 0 0 0.0002 0.0001 0.0001
Bud Site 0.0054 0 0.0011 0 0.0001 0 0.0038 0.0001 0.0005 0.001 0.0021 0 0.0004 0.0001 0.0001 0.0001 0.0002 0.0001
Cell Periphery 0.0002 0 0.0002 0 0 0 0.0003 0 0.0003 0.0001 0.0002 0 0.0001 0 0 0 0.0001 0
Cytoplasm 0.8764 0.9689 0.9001 0.9748 0.871 0.8854 0.8243 0.9636 0.9301 0.944 0.6244 0.9479 0.9176 0.972 0.9596 0.947 0.905 0.8958
Cytoplasmic Foci 0.0145 0.0001 0.0054 0.0001 0.0088 0.0005 0.0263 0.0005 0.0182 0.0111 0.1001 0.0017 0.0045 0.0002 0.001 0.0008 0.0011 0.0009
Eisosomes 0.0001 0 0.0001 0 0 0 0.0002 0 0.0001 0 0.0003 0 0.0001 0 0 0 0.0007 0
Endoplasmic Reticulum 0.0041 0.0006 0.0036 0.0006 0.0038 0.0034 0.0157 0.0003 0.0051 0.0034 0.0096 0.0007 0.0065 0.0003 0.0005 0.0006 0.0016 0.0018
Endosome 0.0163 0.0001 0.01 0.0001 0.0197 0.0011 0.0268 0.0002 0.0097 0.0241 0.1067 0.0122 0.0049 0.0001 0.0005 0.0003 0.0022 0.0033
Golgi 0.0044 0 0.0025 0 0.0071 0 0.0116 0 0.0076 0.004 0.0132 0.006 0.0011 0 0 0 0.0012 0.0009
Lipid Particles 0.0049 0 0.0021 0 0.0247 0 0.0053 0 0.0043 0.0009 0.0239 0.0002 0.0021 0 0 0 0.0003 0.0021
Mitochondria 0.0076 0 0.0087 0 0.0038 0.0098 0.0104 0.0001 0.0027 0.0009 0.0126 0.0021 0.0017 0.0001 0.0002 0.0004 0.0005 0.0022
None 0.0028 0.0001 0.0075 0.0001 0.0007 0.0003 0.0124 0.0004 0.0006 0.0032 0.019 0.0004 0.0032 0.0003 0.0007 0.0007 0.0011 0.0006
Nuclear Periphery 0.0114 0.0025 0.0054 0.0038 0.0126 0.0109 0.0109 0.0022 0.002 0.0007 0.0147 0.0023 0.0091 0.0016 0.0029 0.0058 0.0056 0.0074
Nucleolus 0.0006 0 0.0002 0 0.0001 0 0.001 0 0 0 0.0008 0 0.0003 0.0001 0 0.0001 0.0001 0.0001
Nucleus 0.0263 0.0268 0.0409 0.0191 0.0307 0.0838 0.0163 0.0314 0.0078 0.0035 0.0233 0.0244 0.0217 0.0245 0.0329 0.0404 0.0423 0.0792
Peroxisomes 0.0021 0 0.0008 0 0.0017 0 0.002 0 0.0025 0.0004 0.0109 0.0001 0.0094 0 0 0 0.0001 0.0003
Punctate Nuclear 0.0031 0.0001 0.0011 0.0001 0.0008 0.0004 0.0074 0.0005 0.0007 0.0003 0.006 0.0003 0.0015 0.0002 0.0003 0.0002 0.0007 0.0011
Vacuole 0.0059 0.0004 0.0021 0.0006 0.0073 0.0025 0.0023 0.0001 0.0028 0.001 0.0058 0.0003 0.0017 0.0001 0.0005 0.0007 0.0004 0.0004
Vacuole Periphery 0.0016 0.0001 0.0006 0.0002 0.0044 0.0005 0.0015 0 0.0006 0.0003 0.0034 0.0002 0.0006 0 0.0001 0.0003 0.0002 0.0003

Sequencing Data

R1 R2
G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Post-START S/G2 Metaphase Anaphase Telophase
Gene Expression 125.3697 155.2817 95.1864 84.9502 97.4305 77.7466 97.7869 86.6172 68.662 80.6258
Translational Efficiency 1.5317 1.6246 1.7399 1.7794 1.9017 1.8556 1.7366 1.809 1.8226 1.7292

Hit Data

Dataset Hit
Protein Concentration
Protein Localization
Gene Expression
Translational Efficiency

Micrographs

Cell Count

R1 R2 R1 & R2
WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14
1802 1649 349 1611 2588 1708 117 319 4390 3357 466 1930

Protein Abundance

R1 R2 R1 & R2
WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14
Mean 1273.58 2151.05 2337.40 4481.41 1726.59 2161.97 3272.74 4082.91 1540.64 2156.61 2572.24 4415.54
Standard Deviation 255.10 429.77 432.14 1051.55 295.60 444.50 701.24 1110.77 357.61 437.36 654.08 1071.84
Intensity Change Log 2 0.756151 0.876015 1.815063 0.324421 0.922573 1.241672 0.523654 0.902993 1.513294

Localization Score (DeepLoc)

R1 R2 R1 & R2
WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14
Actin 0.000378 0.000101 0.000471 0.000220 0.000054 0.000254 0.000743 0.000653 0.000187 0.000179 0.000539 0.000292
Bud Neck 0.004543 0.000503 0.004097 0.004409 0.000243 0.000950 0.003634 0.017732 0.002008 0.000730 0.003981 0.006611
Bud Site 0.007455 0.000688 0.003749 0.003617 0.000354 0.003035 0.002296 0.023180 0.003269 0.001882 0.003384 0.006850
Cell Periphery 0.000214 0.000082 0.000520 0.000324 0.000031 0.000080 0.000837 0.000445 0.000106 0.000081 0.000599 0.000344
Cytoplasm 0.582825* 0.578084* 0.620888* 0.116350* 0.756225* 0.544890* 0.177311* 0.115995* 0.685048* 0.561195* 0.509518* 0.116292*
Cytoplasmic Foci 0.013032 0.001776 0.018099 0.002819 0.002021 0.003688 0.008999 0.017111 0.006541 0.002749 0.015814 0.005182
Eisosomes 0.000005 0.000001 0.000003 0.000006 0.000000 0.000002 0.000008 0.000026 0.000002 0.000001 0.000005 0.000009
Endoplasmic Reticulum 0.001824 0.000075 0.000252 0.000134 0.000112 0.000260 0.000355 0.000641 0.000815 0.000169 0.000278 0.000218
Endosome 0.000630 0.000046 0.001738 0.001408 0.000047 0.001850 0.000269 0.028697 0.000287 0.000963 0.001369 0.005918
Golgi 0.000710 0.000124 0.002058 0.001512 0.000158 0.001273 0.000631 0.009757 0.000385 0.000708 0.001700 0.002875
Lipid Particles 0.000539 0.000113 0.002560 0.000455 0.000064 0.000211 0.001168 0.016761 0.000259 0.000163 0.002211 0.003150
Mitochondria 0.000750 0.000138 0.000254 0.000962 0.000106 0.000291 0.000839 0.009367 0.000370 0.000216 0.000401 0.002351
Mitotic Spindle 0.006666 0.000859 0.008792 0.013473 0.000579 0.010752 0.001723 0.048297 0.003077 0.005893 0.007017 0.019229
None 0.012063 0.019051 0.005318 0.010933 0.013839 0.016944 0.004612 0.026677 0.013110 0.017979 0.005141 0.013536
Nuclear Periphery 0.000380 0.000088 0.000722 0.000422 0.000065 0.000177 0.000997 0.001768 0.000194 0.000134 0.000791 0.000644
Nuclear Periphery Foci 0.001256 0.001265 0.006181 0.000372 0.000483 0.000877 0.001835 0.002405 0.000800 0.001067 0.005090 0.000708
Nucleolus 0.000391 0.000122 0.000205 0.000152 0.000055 0.000215 0.000155 0.001227 0.000193 0.000170 0.000192 0.000329
Nucleus 0.358590* 0.394880* 0.288924* 0.839519* 0.223764* 0.408253* 0.770209* 0.605056* 0.279107* 0.401684* 0.409762* 0.800765*
Peroxisomes 0.000239 0.000009 0.000062 0.000212 0.000006 0.000088 0.000042 0.003932 0.000102 0.000049 0.000057 0.000827
Vacuole 0.006673 0.001969 0.034612 0.002117 0.001636 0.004848 0.023204 0.043542 0.003704 0.003434 0.031748 0.008964
Vacuole Periphery 0.000837 0.000026 0.000494 0.000584 0.000157 0.001063 0.000131 0.026732 0.000436 0.000553 0.000403 0.004906

Localization Changes (T-score)

R1 R2 R1 & R2
UBP2_WT UBP14_WT UBP2UBP14_WT UBP2UBP14_UBP2 UBP2UBP14_UBP14 UBP2_WT UBP14_WT UBP2UBP14_WT UBP2UBP14_UBP2 UBP2UBP14_UBP14 UBP2_WT UBP14_WT UBP2UBP14_WT UBP2UBP14_UBP2 UBP2UBP14_UBP14
Actin 7.41 -3.21 5.33 -3.21 4.40 -4.70 -8.50 -9.43 -2.40 5.00 -0.34 -6.06 -2.69 -1.51 5.61
Bud Neck 11.58 -3.72 -3.27 -13.59 1.97 -7.45 -6.93 -6.10 -5.57 -0.42 6.85 -8.59 -11.03 -13.75 1.83
Bud Site 9.28 0.41 6.25 -3.61 4.27 -3.86 -6.60 -3.39 -1.99 -0.56 3.16 -4.38 -0.20 -2.62 3.84
Cell Periphery 6.04 -9.08 -3.84 -7.15 6.64 -8.67 -8.30 -9.33 -8.10 5.04 -0.00 -12.96 -9.81 -9.78 8.43
Cytoplasm 1.10 4.15 61.16* 70.56* 32.25 32.46 41.83 80.89* 45.24 4.24 24.17 20.00 118.38* 85.95* 26.08
Cytoplasmic Foci 9.81 -6.28 8.72 -0.92 11.70 -5.24 -6.41 -4.07 -2.11 4.52 6.04 -11.04 4.39 -0.49 12.65
Eisosomes 10.29 -3.05 -4.86 -12.28 -1.70 -7.68 -9.29 -12.46 -11.41 -0.73 4.21 -10.89 -13.58 -15.24 -0.55
Endoplasmic Reticulum 6.58 5.40 6.20 -7.16 5.11 -1.98 -6.81 -6.03 -1.27 2.10 5.59 3.53 5.42 -1.29 5.98
Endosome 6.75 -4.54 0.80 -1.45 4.13 -2.75 -4.75 -1.61 -0.80 -1.35 -1.74 -5.97 -1.48 -0.23 2.02
Golgi 3.88 -5.73 0.64 -1.26 4.72 -2.49 -5.74 -1.57 -0.17 -0.45 -1.10 -8.24 -0.84 -0.07 4.05
Lipid Particles 2.07 -8.69 0.99 -1.59 9.47 -5.14 -6.13 -1.34 -1.18 0.67 0.24 -10.97 -1.38 -1.50 8.38
Mitochondria 8.76 5.49 -3.77 -18.25 -12.81 -4.94 -13.63 -4.36 -3.98 -2.46 4.11 -4.12 -9.13 -10.76 -7.40
Mitotic Spindle 4.08 -1.21 -0.52 -3.61 0.66 -5.23 -1.50 -3.39 -1.10 -2.30 -2.45 -3.07 -3.62 -1.85 -0.39
None -4.76 6.64 0.62 7.34 -10.18 -2.03 12.47 -2.28 -1.61 -5.57 -5.14 14.46 0.58 5.13 -11.29
Nuclear Periphery 4.86 -8.75 -5.12 -9.39 3.47 -10.66 -11.21 -12.35 -11.19 0.28 0.56 -15.27 -11.52 -12.13 3.89
Nuclear Periphery Foci -0.12 -6.72 5.95 1.92 7.80 -3.64 -4.78 0.05 3.05 4.66 -1.44 -7.77 5.24 3.15 8.44
Nucleolus 2.24 1.87 2.30 -0.72 1.21 -3.74 -6.81 -4.27 -3.09 -2.50 0.08 -4.21 -2.42 -1.89 -0.30
Nucleus -4.50 4.19 -57.20* -59.88* -44.08* -27.70 -21.70 -39.35 -23.62 -3.38 -23.53 -9.33 -93.93* -67.68 -32.28
Peroxisomes 1.71 0.93 1.25 -1.33 1.17 -4.02 -7.43 -1.91 -1.60 -1.53 1.08 -0.09 -0.28 -1.63 -0.31
Vacuole 4.95 -10.94 -2.18 -5.79 10.42 -7.78 -7.42 -7.49 -6.22 2.70 -3.25 -13.44 -8.60 -7.05 11.07
Vacuole Periphery 3.81 1.56 2.58 -1.53 1.99 -1.81 -0.62 -1.51 -1.12 -1.49 -0.02 0.16 -0.66 -0.59 -0.74
Standard name
Human Ortholog
Description Essential protein with two zinc fingers; present in nucleus of growing cells, relocates to cytoplasm in starved cells via a process mediated by Cpr1p; binds translation elongation factor eEF-1 (Tef1p); relative distribution to nucleus increases upon DNA replication stress; human ZPR1 gene can complement yeast by allowing growth during down-regulation of yeast zpr1
Localization
Cell Percentages cytoplasm (92%)
Cell Cycle Regulation No
Subcompartmental Group cytoplasm-7

Zpr1

Zpr1


Nearest neighbours ( genes)

correlation threshold

0.6

1.0

0.80


Biological Process (Gene Ontology)

Molecular Function (Gene Ontology)

Cellular Component (Gene Ontology)


Endocytosis
Temp Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Vph1-GFP)
37℃
RT
Cell Cycle Omics

CYCLoPs (Zpr1-GFP)
Gene / Allele Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Sac6-tdTomato)
Gene Images
Gene Images
Images are not yet available
Images are not yet available