Standard name
Human Ortholog
Description Major karyopherin; involved in export of proteins, RNAs, and ribosomal subunits from the nucleus; exportin
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Micrographs

ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0 0 0 0 0 0 0 0 0 – 0 0 0 0 0 – 0 0 0 0 0 0 0 0
Bud 0 0 0 0 0 0 0 0 0 – 0 0 0 0 0 – 0 0 0 0 0 0 0 0
Bud Neck 0 0 0 0 0 0 0 0 0 – 0 0 0 0 0 – 0 0 0 0 0 0 0 0
Bud Site 0 0 0 0 0 0 0 0 0 – 0 0 0 0 0 – 0 0 – – – – – –
Cell Periphery 0 0 0 0 0 0 0 0 0 – 0 0 0 0 0 – 0 0 0 0 0 0 0 0
Cytoplasm 0.06 0 0.08 0.09 0.11 0.07 0.09 0.06 0.09 – 0.1 0.05 0 0.07 0.09 – 0 0.12 0 0 0 0 0 0
Endoplasmic Reticulum 0 0 0 0 0 0 0 0 0 – 0 0 0 0 0 – 0 0.12 0 0 0 0 0 0
Endosome 0 0 0 0 0 0 0 0 0 – 0 0 0 0 0 – 0 0 0 0 0 0 0 0
Golgi 0 0 0 0 0 0 0 0 0 – 0 0 0 0 0 – 0.06 0.12 0 0 0 0 0 0
Mitochondria 0 0 0 0 0 0 0 0 0.06 – 0.07 0.07 0 0 0 – 0 0 0 0 0 0 0 0
Nucleus 0.65 0.75 0.66 0.63 0.53 0.48 0.59 0.62 0.62 – 0.58 0.6 0.45 0.3 0.13 – 0.59 0.06 0.52 0.66 0.44 0.52 0.46 0.21
Nuclear Periphery 0 0 0.06 0.15 0.13 0.1 0.11 0.06 0.08 – 0.06 0.09 0.13 0.15 0.27 – 0 0 0.15 0 0.14 0 0 0
Nucleolus 0.09 0 0.06 0.11 0.19 0.26 0.18 0.14 0.12 – 0.19 0.17 0.14 0.22 0.33 – 0 0.06 0.2 0.14 0.2 0.12 0.07 0.11
Peroxisomes 0 0 0 0 0 0 0 0 0 – 0 0 0 0 0 – 0 0 0 0 0 0 0 0
SpindlePole 0 0 0 0 0 0 0 0 0 – 0 0 0 0 0 – 0 0 0 0 0 0 0 0
Vac/Vac Membrane 0.24 0.28 0.21 0.1 0.12 0.15 0.1 0.13 0.08 – 0.05 0.12 0.38 0.38 0.24 – 0.35 0.69 0.12 0.14 0.17 0.26 0.4 0.56
ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0 0 0 0 0 0 0 0 0 – 0 1 0 0 3 – 0 0 0 0 0 0 0 0
Bud 0 0 0 0 0 1 1 0 0 – 0 0 0 0 1 – 0 0 0 2 1 0 1 1
Bud Neck 0 0 0 0 0 0 0 0 0 – 0 0 0 0 0 – 0 0 0 0 0 0 0 0
Bud Site 0 0 0 0 0 1 3 1 2 – 2 4 0 0 2 – 0 0 – – – – – –
Cell Periphery 0 0 0 0 0 0 0 0 0 – 0 0 0 0 0 – 0 0 0 0 0 0 0 0
Cytoplasm 8 4 10 16 22 14 24 19 15 – 17 11 3 12 14 – 0 2 0 0 0 0 0 0
Endoplasmic Reticulum 1 0 0 0 1 2 0 1 1 – 0 0 1 0 2 – 0 2 0 0 0 0 0 0
Endosome 0 1 0 0 0 1 0 0 0 – 0 1 0 3 7 – 0 0 0 0 2 1 0 5
Golgi 1 0 0 0 1 0 1 1 0 – 0 0 0 0 0 – 1 2 0 0 0 0 0 3
Mitochondria 0 0 0 3 1 6 8 13 11 – 12 15 0 0 3 – 0 0 0 0 1 3 0 2
Nucleus 85 145 83 110 107 96 163 190 106 – 99 121 38 49 20 – 10 1 82 152 66 57 65 37
Nuclear Periphery 2 4 8 27 27 20 29 19 14 – 11 19 11 24 42 – 0 0 23 9 20 1 3 5
Nucleolus 12 5 7 19 38 51 49 44 21 – 33 34 12 37 52 – 0 1 31 31 30 13 10 18
Peroxisomes 0 0 0 0 0 0 0 0 0 – 0 0 0 0 0 – 0 0 0 0 0 0 0 0
SpindlePole 0 0 0 0 0 0 0 0 0 – 0 0 0 0 1 – 0 0 0 0 0 1 0 0
Vac/Vac Membrane 31 54 27 17 25 30 28 41 13 – 9 25 32 63 38 – 6 11 18 33 26 28 57 97
Unique Cell Count 131 193 126 175 201 200 276 307 171 171 201 85 165 158 17 16 159 232 152 111 143 175
Labelled Cell Count 140 213 135 192 222 222 306 329 183 183 231 97 188 185 17 19 159 232 152 111 143 175


Nucleus

(Huh et al. Nature 2003 425:686)
Screen WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 AF100 AF140 AF180
Mean Cell GFP Intensity (1e-4) 25.7 21.9 18.6 17.8 20.5 18.5 18.3 15.9 16.9 – 16.0 15.4 20.5 19.5 17.5 – 33.9 30.2 20.0 22.6 25.7
Std Deviation (1e-4) 7.4 5.4 6.7 6.2 9.0 7.2 7.6 6.1 7.4 – 6.7 6.9 5.2 6.1 5.6 – 13.0 10.5 5.5 6.3 6.8
Intensity Change (Log2) – – – -0.07 0.14 -0.01 -0.03 -0.23 -0.14 – -0.22 -0.27 0.14 0.06 -0.09 – 0.86 0.7 0.11 0.28 0.47


Localization RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3
Cortical Patches 0 0 0 0 0 0 – 0 0 0 0 0 – 0 0
Bud 0 0 0 0 0 0 – 0 0 0 0 0 – 0 0
Bud Neck 0 0 0 0 0 0 – 0 0 0 0 0 – 0 0
Bud Site 0 0 0 0 0 0 – 0 0 0 0 0 – 0 0
Cell Periphery 0 0 0 0 0 0 – 0 0 0 0 0 – 0 0
Cytoplasm 0.4 0.9 -0.3 0.3 -0.7 0.3 – 0.6 -0.9 -1.3 -0.2 0.3 – 0 0
Endoplasmic Reticulum 0 0 0 0 0 0 – 0 0 0 0 0 – 0 0
Endosome 0 0 0 0 0 0 – 0 0 0 0 0 – 0 0
Golgi 0 0 0 0 0 0 – 0 0 0 0 0 – 0 0
Mitochondria 0 0 0 0 0 0 – 3.0 3.1 0 0 0 – 0 0
Nucleus -0.5 -2.3 -3.2 -1.3 -0.8 -0.7 – -1.4 -1.0 -3.0 -6.1 -9.3 – -0.6 -4.6
Nuclear Periphery 2.4 2.0 1.1 1.3 -0.1 0.6 – 0 1.0 1.6 2.2 4.4 – 0 0
Nucleolus 1.6 3.4 4.6 3.3 2.6 2.0 – 3.4 3.0 2.1 4.0 5.6 – 0 0
Peroxisomes 0 0 0 0 0 0 – 0 0 0 0 0 – 0 0
SpindlePole 0 0 0 0 0 0 – 0 0 0 0 0 – 0 0
Vacuole -2.8 -2.2 -1.5 -3.1 -2.1 -3.4 – -4.2 -2.2 2.6 3.1 0.5 – 0 0

Images

Circle plot not available

Protein Concentration and Protein Localization Data

R1 R2 R3
G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase
Concentration 19.5745 25.3239 22.7358 21.5222 21.2287 22.7062 22.6759 28.2168 23.5842 19.5951 21.9032 24.9246 25.1905 24.8817 23.9287 22.5404 22.4833 23.3519
Actin 0.0673 0.0003 0.0015 0.0217 0.0332 0.0258 0.0106 0.0003 0.007 0.0011 0.003 0.0006 0.0005 0.0009 0.0007 0.0004 0.0003 0.0005
Bud 0.0009 0 0.0005 0.0001 0.0004 0.0002 0.0002 0 0.0004 0.0002 0.0003 0 0.0001 0.0002 0.0057 0 0 0
Bud Neck 0.0038 0.0001 0.0002 0.0002 0.0011 0.0019 0.0002 0.0001 0.0003 0.0002 0.0005 0.0007 0 0.0021 0.0001 0.0001 0.0002 0.0005
Bud Periphery 0.0017 0.0001 0.001 0.0002 0.0009 0.0009 0.0004 0 0.0006 0.0004 0.0005 0.0002 0.0002 0.0011 0.0018 0.0001 0.0001 0.0002
Bud Site 0.0082 0 0.0003 0.0002 0.001 0.0002 0.0005 0 0.0007 0.0006 0.0005 0 0.0001 0.0002 0.0046 0 0 0
Cell Periphery 0.002 0.0001 0.0004 0.0003 0.001 0.0004 0.0003 0.0001 0.0003 0.0004 0.0003 0.0001 0.0001 0.0009 0.0001 0.0001 0.0001 0.0001
Cytoplasm 0.0049 0.0005 0.0009 0.0015 0.0005 0.0005 0.0043 0.0003 0.0027 0.002 0.0014 0.0005 0.0002 0.0006 0.0007 0.0011 0.0006 0.0003
Cytoplasmic Foci 0.0297 0 0 0.0181 0.0023 0.0005 0.0118 0 0.0071 0.002 0.0146 0.0045 0.0003 0 0 0 0.0001 0
Eisosomes 0.0007 0 0 0.0001 0.0004 0.0005 0.0001 0 0.0002 0.0001 0.0001 0 0 0 0 0 0 0
Endoplasmic Reticulum 0.0061 0.0002 0.0005 0.0005 0.0003 0.0015 0.0029 0.0001 0.0015 0.0014 0.001 0.0004 0.0002 0.0006 0.0002 0.0003 0.0003 0.0003
Endosome 0.0255 0 0.0003 0.002 0.0014 0.0028 0.0102 0.0002 0.0085 0.0066 0.0108 0.0005 0.0002 0.0003 0.0001 0.0001 0.0004 0.0001
Golgi 0.0122 0 0 0.0019 0.0049 0.0035 0.0036 0.0001 0.0035 0.001 0.0073 0.0001 0 0 0 0 0.0001 0
Lipid Particles 0.0183 0 0.0001 0.0052 0.0146 0.0028 0.0162 0.0008 0.0047 0.0194 0.0181 0.0026 0.0004 0 0 0 0.0016 0
Mitochondria 0.0147 0.0014 0.0047 0.0053 0.0429 0.0066 0.0056 0.0039 0.0164 0.0386 0.0268 0.0015 0.0096 0.0014 0.0016 0.001 0.0024 0.0014
None 0.0037 0 0.0002 0.0018 0.0003 0.0026 0.0029 0 0.0014 0.0007 0.0004 0.0002 0.0001 0 0.0002 0 0.0001 0
Nuclear Periphery 0.325 0.3114 0.3757 0.3247 0.0636 0.2855 0.3769 0.3355 0.4535 0.3113 0.2988 0.3225 0.324 0.3316 0.5473 0.4199 0.2973 0.3309
Nucleolus 0.0125 0.0028 0.0086 0.0128 0.0374 0.0211 0.0129 0.0054 0.0089 0.0088 0.0185 0.005 0.0062 0.0055 0.002 0.0051 0.0106 0.0051
Nucleus 0.4018 0.6744 0.5923 0.5779 0.7721 0.6211 0.5107 0.6383 0.4581 0.5717 0.5774 0.6514 0.6455 0.6224 0.4257 0.5628 0.6739 0.651
Peroxisomes 0.0191 0 0 0.0067 0.0029 0.0006 0.0032 0 0.0013 0.0006 0.0021 0.0001 0 0 0 0 0 0
Punctate Nuclear 0.0081 0.0001 0.0005 0.0028 0.0005 0.0019 0.0089 0.0003 0.0022 0.0029 0.0027 0.0022 0.0034 0.0005 0.0005 0.0004 0.0007 0.0002
Vacuole 0.0111 0.0012 0.0024 0.0015 0.0046 0.0034 0.0049 0.001 0.005 0.0075 0.003 0.0009 0.0009 0.0239 0.0006 0.002 0.0013 0.0011
Vacuole Periphery 0.0226 0.0073 0.0096 0.0144 0.0138 0.0156 0.0126 0.0135 0.0157 0.0225 0.0119 0.0063 0.0079 0.0077 0.008 0.0065 0.0101 0.0082

Sequencing Data

R1 R2
G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Post-START S/G2 Metaphase Anaphase Telophase
Gene Expression 124.4084 98.4861 102.3133 136.9868 110.7571 107.7384 106.3965 113.8421 108.4325 127.5256
Translational Efficiency 1.1861 1.3931 1.2515 0.9176 1.1139 1.122 1.0227 0.8283 0.9502 0.8807

Hit Data

Dataset Hit
Protein Concentration ✘
Protein Localization ✘
Gene Expression ✘
Translational Efficiency ✘
Standard name
Human Ortholog
Description Major karyopherin; involved in export of proteins, RNAs, and ribosomal subunits from the nucleus; exportin
Localization
Cell Percentages nucleus (48%)
Cell Cycle Regulation No
Subcompartmental Group nucleus-5

Crm1

Crm1


Nearest neighbours ( genes)

correlation threshold

0.6

1.0

0.80


Biological Process (Gene Ontology)
Molecular Function (Gene Ontology)
Cellular Component (Gene Ontology)

Endocytosis
Temp Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Vph1-GFP)
37℃
RT
Cell Cycle Omics

CYCLoPs (Crm1-GFP)
Gene / Allele Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Sac6-tdTomato)
Gene Images
Gene Images
Images are not yet available
Images are not yet available