Standard name | |
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Human Ortholog | |
Description | Cytoplasmic protein containing a zinc finger domain; sequence similarity to that of Type I J-proteins; computational analysis of large-scale protein-protein interaction data suggests a possible role in actin patch assembly |
ensLOC | DeepLoc | |||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Localization | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | WT1 | WT2 | WT3 | AF100 | AF140 | AF180 |
Cortical Patches | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 2 | 5 | 1 | 3 | 1 | 0 | 1 | 2 | 7 | 8 |
Bud | 0 | 1 | 0 | 0 | 0 | 1 | 0 | 2 | 1 | 10 | 2 | 6 | 0 | 1 | 1 | 0 | 1 | 0 | 0 | 1 | 1 | 1 | 11 | 15 |
Bud Neck | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 2 | 1 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 2 | 0 | 0 | 0 | 0 | 1 | 0 | – | – | – | – | – | – |
Cell Periphery | 0 | 1 | 4 | 2 | 1 | 1 | 0 | 2 | 7 | 1 | 0 | 1 | 0 | 1 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 213 | 261 | 187 | 151 | 189 | 220 | 377 | 461 | 265 | 317 | 200 | 265 | 323 | 390 | 364 | 84 | 46 | 43 | 211 | 258 | 181 | 256 | 302 | 316 |
Endoplasmic Reticulum | 2 | 0 | 3 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 2 | 2 | 2 | 3 | 0 | 0 | 0 | 1 | 2 | 2 |
Endosome | 2 | 0 | 0 | 1 | 2 | 0 | 3 | 2 | 1 | 4 | 1 | 2 | 4 | 12 | 8 | 10 | 2 | 4 | 4 | 3 | 0 | 2 | 7 | 6 |
Golgi | 0 | 0 | 0 | 0 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 4 | 0 | 0 | 0 | 0 | 2 |
Mitochondria | 1 | 1 | 0 | 0 | 1 | 40 | 21 | 65 | 86 | 105 | 137 | 135 | 0 | 0 | 0 | 1 | 3 | 2 | 1 | 1 | 0 | 5 | 3 | 5 |
Nucleus | 2 | 0 | 2 | 1 | 2 | 6 | 8 | 9 | 6 | 2 | 7 | 10 | 2 | 0 | 1 | 2 | 1 | 0 | 2 | 1 | 0 | 0 | 1 | 0 |
Nuclear Periphery | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 1 | 0 |
Nucleolus | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 2 | 1 | 0 | 0 | 0 | 0 | 0 | 1 |
Peroxisomes | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 1 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 1 | 0 | 2 | 1 | 3 | 0 | 2 | 2 | 0 | 1 | 0 | 0 | 0 | 6 | 4 | 14 | 7 | 6 | 0 | 1 | 3 | 2 | 5 | 9 |
Vac/Vac Membrane | 7 | 9 | 5 | 8 | 34 | 5 | 64 | 47 | 17 | 23 | 16 | 27 | 7 | 15 | 9 | 6 | 9 | 3 | 5 | 4 | 1 | 0 | 3 | 1 |
Unique Cell Count | 225 | 269 | 195 | 158 | 205 | 248 | 428 | 532 | 321 | 408 | 306 | 384 | 331 | 407 | 381 | 114 | 68 | 61 | 235 | 276 | 193 | 279 | 354 | 379 |
Labelled Cell Count | 229 | 273 | 203 | 166 | 233 | 273 | 477 | 591 | 383 | 464 | 368 | 453 | 338 | 426 | 392 | 126 | 78 | 67 | 235 | 276 | 193 | 279 | 354 | 379 |
Screen | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | AF100 | AF140 | AF180 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Mean Cell GFP Intensity (1e-4) | 5.3 | 6.0 | 7.0 | 6.3 | 7.0 | 4.4 | 5.6 | 5.4 | 4.4 | 4.7 | 4.2 | 4.4 | 6.5 | 6.8 | 6.7 | 8.3 | 8.0 | 8.3 | 5.3 | 5.8 | 6.1 |
Std Deviation (1e-4) | 0.7 | 0.8 | 1.8 | 1.3 | 1.6 | 1.2 | 1.6 | 1.6 | 1.0 | 1.3 | 0.7 | 1.1 | 1.2 | 1.4 | 1.5 | 1.4 | 1.6 | 1.5 | 1.1 | 1.3 | 1.6 |
Intensity Change (Log2) | – | – | – | -0.16 | -0.01 | -0.69 | -0.34 | -0.38 | -0.67 | -0.6 | -0.73 | -0.66 | -0.11 | -0.05 | -0.07 | 0.23 | 0.19 | 0.23 | -0.4 | -0.28 | -0.2 |
Localization | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Cortical Patches | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cell Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | -0.2 | -1.6 | -2.7 | -3.1 | -3.5 | -4.5 | -5.6 | -7.9 | -7.4 | 1.1 | 0 | -0.2 | -5.7 | -6.3 | -5.7 |
Endoplasmic Reticulum | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Endosome | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Golgi | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Mitochondria | 0 | 0 | 0 | 3.1 | 5.1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleus | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nuclear Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleolus | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Peroxisomes | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 4.3 | 0 | 0 |
Vacuole | 1.2 | 4.7 | 0 | 4.6 | 2.9 | 1.5 | 1.7 | 1.5 | 2.2 | 0 | 0.7 | 0 | 0 | 0 | 0 |
R1 | R2 | R3 | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Concentration | 2.0386 | 1.6995 | 1.8619 | 0.7932 | 1.8503 | 1.539 | 3.7736 | 3.3667 | 3.3611 | 2.9488 | 2.8119 | 3.3679 | 6.1091 | 4.6413 | 4.9221 | 5.2599 | 5.1171 | 4.4373 |
Actin | 0.0253 | 0.0098 | 0.0551 | 0.0003 | 0.007 | 0.0015 | 0.0496 | 0.0103 | 0.0239 | 0.0041 | 0.0045 | 0.0137 | 0.0002 | 0.0009 | 0.0551 | 0.1278 | 0.0001 | 0.0007 |
Bud | 0.0005 | 0.0001 | 0.0013 | 0.0001 | 0.0034 | 0 | 0.0026 | 0.0011 | 0.0011 | 0.0076 | 0.0008 | 0.0003 | 0 | 0.0001 | 0.0006 | 0.001 | 0 | 0 |
Bud Neck | 0.0007 | 0.0002 | 0.0067 | 0.0006 | 0.0009 | 0.001 | 0.0077 | 0.0019 | 0.0011 | 0.0006 | 0.0013 | 0.0024 | 0 | 0.0001 | 0.0004 | 0.0076 | 0.0002 | 0.0008 |
Bud Periphery | 0.0008 | 0.0001 | 0.0016 | 0 | 0.0059 | 0 | 0.004 | 0.001 | 0.0015 | 0.004 | 0.0008 | 0.0006 | 0 | 0 | 0.0008 | 0.0015 | 0 | 0 |
Bud Site | 0.0007 | 0.0013 | 0.0138 | 0.0001 | 0.004 | 0.0001 | 0.0109 | 0.0064 | 0.0021 | 0.002 | 0.0004 | 0.0002 | 0.0002 | 0.0008 | 0.0016 | 0.0129 | 0.0001 | 0 |
Cell Periphery | 0.0002 | 0.0002 | 0.0006 | 0 | 0.0004 | 0 | 0.0004 | 0.0004 | 0.0002 | 0.0001 | 0.0001 | 0 | 0.0001 | 0.0001 | 0.0002 | 0.0017 | 0 | 0 |
Cytoplasm | 0.6035 | 0.7025 | 0.6551 | 0.8534 | 0.6644 | 0.8309 | 0.6459 | 0.8458 | 0.7776 | 0.8614 | 0.6713 | 0.8449 | 0.4756 | 0.8347 | 0.7432 | 0.5605 | 0.8177 | 0.8375 |
Cytoplasmic Foci | 0.0167 | 0.0042 | 0.0091 | 0.0027 | 0.0162 | 0.0049 | 0.0147 | 0.0057 | 0.0059 | 0.0065 | 0.0252 | 0.0174 | 0.003 | 0.0058 | 0.005 | 0.0075 | 0.0024 | 0.0045 |
Eisosomes | 0.0002 | 0.0001 | 0.0007 | 0 | 0.0001 | 0 | 0.0003 | 0.0001 | 0.0003 | 0 | 0.0002 | 0 | 0.0001 | 0 | 0.0003 | 0.0009 | 0 | 0 |
Endoplasmic Reticulum | 0.0139 | 0.0059 | 0.0117 | 0.0018 | 0.0152 | 0.0075 | 0.0134 | 0.0053 | 0.0055 | 0.0053 | 0.0042 | 0.0036 | 0.002 | 0.0054 | 0.0077 | 0.0052 | 0.0038 | 0.0038 |
Endosome | 0.0304 | 0.0014 | 0.0155 | 0.0008 | 0.034 | 0.0052 | 0.0181 | 0.003 | 0.0097 | 0.0046 | 0.0105 | 0.0091 | 0.0006 | 0.0036 | 0.0096 | 0.007 | 0.0033 | 0.0018 |
Golgi | 0.0038 | 0.0003 | 0.009 | 0 | 0.0029 | 0.0002 | 0.0064 | 0.0004 | 0.0015 | 0.0003 | 0.0013 | 0.0014 | 0 | 0.0003 | 0.0046 | 0.0084 | 0.0001 | 0.0001 |
Lipid Particles | 0.0023 | 0.0003 | 0.0032 | 0 | 0.0023 | 0.0003 | 0.0113 | 0.0002 | 0.0037 | 0.0001 | 0.0069 | 0.0008 | 0.0001 | 0.0003 | 0.0015 | 0.0039 | 0.0001 | 0.0001 |
Mitochondria | 0.0028 | 0.0001 | 0.0064 | 0.0001 | 0.0042 | 0.0002 | 0.0059 | 0.0002 | 0.0025 | 0.0005 | 0.0006 | 0.0016 | 0.0001 | 0.0002 | 0.0012 | 0.0011 | 0.0001 | 0.0001 |
None | 0.216 | 0.2622 | 0.1839 | 0.1345 | 0.1198 | 0.1239 | 0.12 | 0.0997 | 0.1323 | 0.0769 | 0.2089 | 0.0601 | 0.4849 | 0.141 | 0.1519 | 0.2405 | 0.146 | 0.1424 |
Nuclear Periphery | 0.0356 | 0.0015 | 0.0116 | 0.0008 | 0.034 | 0.0048 | 0.0362 | 0.0034 | 0.0073 | 0.0037 | 0.0057 | 0.0061 | 0.0027 | 0.0018 | 0.0053 | 0.0023 | 0.005 | 0.0015 |
Nucleolus | 0.0015 | 0.0001 | 0.0004 | 0 | 0.0008 | 0.0001 | 0.001 | 0.0001 | 0.0003 | 0.0001 | 0.0015 | 0.0006 | 0.0001 | 0 | 0.0001 | 0.0002 | 0.0001 | 0 |
Nucleus | 0.0265 | 0.0072 | 0.0067 | 0.0038 | 0.0574 | 0.0147 | 0.0309 | 0.0114 | 0.0086 | 0.0175 | 0.0127 | 0.0238 | 0.0285 | 0.0029 | 0.0071 | 0.0063 | 0.0182 | 0.0053 |
Peroxisomes | 0.0004 | 0.0001 | 0.0018 | 0 | 0.0012 | 0.0002 | 0.008 | 0.0002 | 0.0061 | 0.0002 | 0.0017 | 0.0005 | 0 | 0.0001 | 0.0004 | 0.0015 | 0 | 0 |
Punctate Nuclear | 0.0087 | 0.0013 | 0.0024 | 0.0006 | 0.0078 | 0.0036 | 0.0079 | 0.0019 | 0.0025 | 0.0023 | 0.04 | 0.0114 | 0.0012 | 0.0008 | 0.0016 | 0.0011 | 0.0017 | 0.0008 |
Vacuole | 0.0067 | 0.001 | 0.0024 | 0.0003 | 0.0122 | 0.0008 | 0.0032 | 0.0013 | 0.0042 | 0.0018 | 0.0011 | 0.0011 | 0.0005 | 0.0008 | 0.0012 | 0.001 | 0.001 | 0.0006 |
Vacuole Periphery | 0.0029 | 0.0001 | 0.0011 | 0.0001 | 0.006 | 0.0002 | 0.0017 | 0.0002 | 0.0023 | 0.0004 | 0.0003 | 0.0006 | 0 | 0.0001 | 0.0004 | 0.0003 | 0.0002 | 0.0001 |
R1 | R2 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Gene Expression | 20.3307 | 9.9133 | 13.4862 | 22.9147 | 20.3688 | 25.8612 | 23.8055 | 18.604 | 27.0735 | 21.6177 |
Translational Efficiency | 0.9453 | 1.5325 | 1.3603 | 0.9027 | 0.9331 | 1.27 | 1.4585 | 1.9531 | 1.3197 | 1.3329 |
Dataset | Hit |
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Protein Concentration | ✘ |
Protein Localization | ✘ |
Gene Expression | ✘ |
Translational Efficiency | ✘ |
Temp | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Vph1-GFP) |
---|---|---|---|---|
37℃ | ||||
RT |
Gene / Allele | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Sac6-tdTomato) |
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Gene | Images |
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Gene | Images |
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