Standard name
Human Ortholog
Description Protein of unknown function; associates with ribosomes and has a putative RNA binding domain; interacts with Tma20p; similar to human GRAP and human DRP1, which interacts with human Tma20p homolog MCT-1; protein abundance increases in response to DNA replication stress

Micrographs

ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Neck 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Site 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cell Periphery 0 0 0 0.06 0.05 0 0.08 0.08 0.1 0.09 0.14 0 0 0 0 0.06 0 0 0 0 0 0 0
Cytoplasm 0.96 0.97 0.91 0.88 0.85 0.74 0.78 0.74 0.71 0.63 0.66 0.97 0.96 0.98 0.88 0.93 0.97 0.91 0.94 0.89 0.93 0.91 0.92
Endoplasmic Reticulum 0 0 0 0.06 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.05 0
Endosome 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Golgi 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Mitochondria 0 0 0 0 0 0.27 0.08 0.23 0.2 0.32 0.26 0 0 0 0 0 0 0 0 0 0 0 0
Nucleus 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nuclear Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nucleolus 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Peroxisomes 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
SpindlePole 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Vac/Vac Membrane 0 0 0 0.05 0.11 0.06 0.13 0 0.08 0.08 0.09 0 0 0 0.07 0 0 0 0 0 0 0 0
ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0 0 0 2 0 3 5 16 16 11 13 0 1 0 0 0 0 0 0 1 1 0 1
Bud 0 0 0 0 0 8 2 2 2 5 1 0 0 0 1 0 0 0 0 0 0 0 1
Bud Neck 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
Bud Site 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cell Periphery 5 0 11 19 20 14 38 38 42 36 56 3 9 11 8 13 1 2 0 4 0 1 0
Cytoplasm 179 198 258 261 331 269 355 345 304 254 265 257 321 374 210 210 180 189 193 266 233 340 379
Endoplasmic Reticulum 0 6 10 18 17 10 9 17 18 7 16 9 14 9 7 6 6 2 4 11 9 17 17
Endosome 1 0 0 0 0 1 3 1 4 3 0 0 0 0 2 0 0 1 0 1 0 0 0
Golgi 0 0 1 0 2 1 2 1 4 3 2 0 1 0 2 1 0 0 0 0 0 1 1
Mitochondria 4 0 1 3 2 98 36 109 86 129 104 0 0 0 2 3 2 1 0 2 0 1 0
Nucleus 1 0 4 1 1 3 1 2 1 1 1 0 0 0 2 2 3 2 2 0 0 0 0
Nuclear Periphery 0 0 0 1 1 0 0 2 0 1 1 0 0 0 0 0 0 0 0 0 1 0 1
Nucleolus 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0
Peroxisomes 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
SpindlePole 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Vac/Vac Membrane 3 1 12 15 42 21 59 12 34 33 37 0 0 0 17 10 5 4 3 5 1 5 3
Unique Cell Count 187 205 282 298 388 365 457 466 429 406 402 265 333 380 238 225 185 209 206 300 252 373 411
Labelled Cell Count 193 205 297 321 417 428 510 545 511 484 496 269 346 394 251 245 197 209 206 300 252 373 411


Cytoplasm

(Huh et al. Nature 2003 425:686)
Screen WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 AF100 AF140 AF180
Mean Cell GFP Intensity (1e-4) 19.4 21.7 17.9 14.8 13.2 8.3 9.9 9.1 9.1 8.7 9.3 22.5 23.4 22.2 19.2 18.5 19.2 20.0 21.0 22.3
Std Deviation (1e-4) 4.5 4.6 3.7 2.9 2.6 2.2 2.0 2.2 1.8 1.8 2.2 4.6 4.7 5.2 6.4 5.6 6.0 4.4 5.1 5.7
Intensity Change (Log2) -0.27 -0.44 -1.11 -0.85 -0.99 -0.97 -1.04 -0.94 0.33 0.39 0.31 0.1 0.05 0.1 0.16 0.23 0.31


Localization RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3
Cortical Patches 0 0 0 0 3.1 3.3 0 3.0 0 0 0 0 0 0
Bud 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Neck 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Site 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cell Periphery 1.3 0.8 0 2.3 2.3 2.9 2.5 4.3 -2.0 -0.8 -0.7 -0.3 1.0 0
Cytoplasm -1.5 -2.4 -5.8 -4.8 -5.9 -6.6 -8.6 -7.8 2.7 2.6 4.2 -1.2 0.8 2.5
Endoplasmic Reticulum 1.4 0.5 -0.6 -1.3 0.1 0.4 -1.5 0.3 -0.1 0.4 -0.9 -0.4 -0.6 -0.2
Endosome 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Golgi 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Mitochondria 0 0 9.3 4.6 8.6 7.8 10.4 9.1 0 0 0 0 0 0
Nucleus 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nuclear Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nucleolus 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Peroxisomes 0 0 0 0 0 0 0 0 0 0 0 0 0 0
SpindlePole 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Vacuole 0.4 3.1 0.9 3.9 -1.3 1.9 2.0 2.5 -3.4 -3.8 -4.1 1.4 0.1 -0.9

Images

Circle plot not available

Protein Concentration and Protein Localization Data

R1 R2 R3
G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase
Concentration 7.744 10.1211 8.83 8.5175 7.7416 8.974 10.5652 13.7836 12.7853 12.4225 11.804 12.2806 11.7095 15.8062 15.5444 13.6706 13.3389 15.3857
Actin 0.0095 0.0004 0.0084 0.0078 0.0285 0.0015 0.0083 0.0003 0.0006 0.0141 0.0048 0.0005 0.0491 0.0044 0.0184 0.0006 0.0032 0.0009
Bud 0.0006 0.0004 0.0007 0.0014 0.0007 0.0005 0.0007 0.0005 0.0005 0.0019 0.0009 0.0002 0.0009 0.0008 0.0003 0.0007 0.0009 0.0002
Bud Neck 0.0011 0.0002 0.0008 0.0006 0.0012 0.0009 0.0005 0.0003 0.0005 0.0018 0.0006 0.001 0.0031 0.0005 0.0003 0.0005 0.001 0.0009
Bud Periphery 0.0005 0.0001 0.0005 0.0011 0.0005 0.0006 0.0008 0.0005 0.0002 0.0011 0.0023 0.0001 0.0011 0.0004 0.0001 0.0003 0.0005 0.0001
Bud Site 0.008 0.0006 0.0008 0.0044 0.0029 0.0001 0.0025 0.0007 0.0008 0.0015 0.0008 0.0001 0.0278 0.0017 0.0004 0.0006 0.0009 0.0001
Cell Periphery 0.0004 0.0002 0.0003 0.0006 0.0002 0.0002 0.0005 0.0005 0.0002 0.0003 0.0005 0.0001 0.0024 0.0006 0.0002 0.0002 0.0001 0.0001
Cytoplasm 0.7901 0.9682 0.8607 0.7913 0.7212 0.8704 0.7224 0.9657 0.8799 0.7567 0.7459 0.8734 0.6319 0.8913 0.8742 0.8355 0.8003 0.9056
Cytoplasmic Foci 0.0153 0.0056 0.0116 0.0137 0.0236 0.01 0.0141 0.0035 0.0175 0.0147 0.0143 0.009 0.0318 0.0085 0.0061 0.0218 0.0554 0.0064
Eisosomes 0.0001 0 0.0001 0.0002 0.0004 0 0.0001 0 0 0.0001 0 0 0.0015 0 0.0001 0 0 0
Endoplasmic Reticulum 0.0594 0.0086 0.0176 0.0277 0.0389 0.0471 0.0853 0.0175 0.0278 0.0243 0.0154 0.0585 0.1119 0.0519 0.0544 0.0092 0.0063 0.0481
Endosome 0.0414 0.0084 0.0485 0.0781 0.094 0.0361 0.0505 0.0041 0.0419 0.0564 0.0739 0.0342 0.0504 0.0179 0.0196 0.0777 0.0753 0.0167
Golgi 0.0074 0.0012 0.0079 0.0115 0.0321 0.0057 0.0052 0.0004 0.003 0.0118 0.0141 0.0018 0.0129 0.0046 0.0038 0.0029 0.024 0.0048
Lipid Particles 0.0025 0 0.0014 0.002 0.0112 0.0001 0.0029 0.0001 0.0012 0.0009 0.001 0.0001 0.0071 0.0003 0.0005 0.0006 0.0066 0.0013
Mitochondria 0.0175 0.0007 0.0083 0.0161 0.0106 0.012 0.0044 0.0002 0.0008 0.0043 0.05 0.0013 0.0064 0.002 0.0015 0.0006 0.012 0.0088
None 0.0059 0.0006 0.0012 0.0044 0.0012 0.0008 0.0073 0.0005 0.0007 0.0009 0.0007 0.0006 0.0088 0.0006 0.0015 0.0021 0.0006 0.0005
Nuclear Periphery 0.0139 0.0008 0.0112 0.0057 0.0042 0.0014 0.0348 0.0008 0.0044 0.0061 0.007 0.0035 0.0159 0.0019 0.0035 0.0033 0.001 0.0014
Nucleolus 0.0002 0 0.0003 0.0002 0.0002 0 0.0005 0 0.0001 0.0001 0.0006 0 0.0006 0 0 0.0001 0 0
Nucleus 0.0073 0.0006 0.0063 0.0041 0.0013 0.0009 0.031 0.0009 0.0019 0.0029 0.0029 0.0085 0.0055 0.0012 0.0012 0.0025 0.0009 0.0009
Peroxisomes 0.0023 0 0.0005 0.0003 0.0045 0.0001 0.001 0 0.0015 0.0009 0.0002 0 0.0101 0.0001 0.0002 0.0001 0.0025 0.0002
Punctate Nuclear 0.0052 0 0.0012 0.0007 0.0014 0.0001 0.0056 0 0.0008 0.0004 0.0002 0.0001 0.009 0.0002 0.0002 0.0007 0.0003 0.0001
Vacuole 0.0087 0.0029 0.009 0.0191 0.013 0.0078 0.0176 0.0031 0.0129 0.0725 0.0477 0.0052 0.0096 0.0102 0.012 0.0354 0.0063 0.0022
Vacuole Periphery 0.0026 0.0005 0.0029 0.0089 0.0084 0.0035 0.0039 0.0004 0.0025 0.0265 0.016 0.0017 0.0022 0.0009 0.0015 0.0045 0.0019 0.0009

Sequencing Data

R1 R2
G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Post-START S/G2 Metaphase Anaphase Telophase
Gene Expression 116.4397 105.7422 152.0264 92.7383 129.4021 116.3752 99.8159 87.3824 114.4737 98.3604
Translational Efficiency 2.435 2.734 1.7891 3.354 2.3218 2.3334 2.2199 2.6559 2.0886 2.2982

Hit Data

Dataset Hit
Protein Concentration
Protein Localization
Gene Expression
Translational Efficiency

Micrographs

Cell Count

R1 R2 R1 & R2
WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14
1082 607 1585 1660 1527 2287 844 1092 2609 2894 2429 2752

Protein Abundance

R1 R2 R1 & R2
WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14
Mean 963.81 1470.42 2141.87 2611.25 1387.12 1527.82 2261.55 2712.84 1211.57 1515.78 2183.45 2651.56
Standard Deviation 166.84 281.97 438.48 492.40 263.64 268.14 423.97 501.05 309.38 272.11 437.22 498.34
Intensity Change Log 2 0.609408 1.152050 1.437920 0.139382 0.705219 0.967711 0.350884 0.905393 1.179303

Localization Score (DeepLoc)

R1 R2 R1 & R2
WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14
Actin 0.000621 0.000409 0.000122 0.000386 0.000148 0.000088 0.000277 0.000331 0.000344 0.000156 0.000176 0.000364
Bud Neck 0.001170 0.000603 0.000755 0.000993 0.000169 0.000333 0.002263 0.002422 0.000584 0.000389 0.001279 0.001560
Bud Site 0.071780 0.024598 0.004408 0.012654 0.012601 0.010960 0.009821 0.016537 0.037144 0.013820 0.006289 0.014195
Cell Periphery 0.000761 0.001181 0.004476 0.019717 0.000701 0.000172 0.004845 0.008866 0.000726 0.000383 0.004604 0.015412
Cytoplasm 0.543968* 0.849537* 0.903971* 0.802310* 0.883615* 0.857325* 0.850789* 0.752461* 0.742757* 0.855692* 0.885492* 0.782530*
Cytoplasmic Foci 0.249120* 0.057466 0.003846 0.003556 0.051511 0.049267 0.009788 0.010319 0.133463 0.050987 0.005911 0.006239
Eisosomes 0.000020 0.000004 0.000001 0.000004 0.000002 0.000002 0.000003 0.000003 0.000009 0.000002 0.000002 0.000004
Endoplasmic Reticulum 0.013183 0.002358 0.000433 0.000496 0.004189 0.002519 0.000378 0.000401 0.007919 0.002485 0.000414 0.000458
Endosome 0.010628 0.005843 0.000652 0.001156 0.002200 0.003618 0.002256 0.002076 0.005695 0.004084 0.001209 0.001521
Golgi 0.022678 0.017385 0.009752 0.010551 0.012572 0.007836 0.017224 0.017589 0.016763 0.009839 0.012349 0.013344
Lipid Particles 0.000731 0.003005 0.005996 0.016907 0.000979 0.000531 0.012137 0.016200 0.000876 0.001050 0.008130 0.016627
Mitochondria 0.005002 0.000640 0.000062 0.000273 0.000323 0.000471 0.000039 0.000073 0.002264 0.000506 0.000054 0.000194
Mitotic Spindle 0.001921 0.001308 0.000629 0.000456 0.000992 0.001209 0.001337 0.002623 0.001377 0.001230 0.000875 0.001316
None 0.001587 0.000270 0.001298 0.000521 0.000317 0.000428 0.001728 0.001356 0.000844 0.000395 0.001447 0.000853
Nuclear Periphery 0.000062 0.000018 0.000129 0.000082 0.000016 0.000027 0.000111 0.000120 0.000035 0.000025 0.000123 0.000097
Nuclear Periphery Foci 0.000402 0.001610 0.005250 0.002535 0.000984 0.000423 0.006845 0.004954 0.000743 0.000672 0.005804 0.003495
Nucleolus 0.000108 0.000029 0.000062 0.000124 0.000070 0.000074 0.000061 0.000155 0.000086 0.000064 0.000062 0.000136
Nucleus 0.006667 0.001933 0.011158 0.003412 0.001423 0.002880 0.010243 0.008322 0.003598 0.002681 0.010840 0.005361
Peroxisomes 0.000609 0.000753 0.000032 0.000182 0.000119 0.000205 0.000066 0.000198 0.000322 0.000320 0.000044 0.000188
Vacuole 0.017464 0.021389 0.039839 0.113873 0.011277 0.042832 0.064368 0.142339 0.013843 0.038334 0.048362 0.125168
Vacuole Periphery 0.051516 0.009661 0.007127 0.009811 0.015793 0.018802 0.005421 0.012655 0.030608 0.016884 0.006534 0.010939

Localization Changes (T-score)

R1 R2 R1 & R2
UBP2_WT UBP14_WT UBP2UBP14_WT UBP2UBP14_UBP2 UBP2UBP14_UBP14 UBP2_WT UBP14_WT UBP2UBP14_WT UBP2UBP14_UBP2 UBP2UBP14_UBP14 UBP2_WT UBP14_WT UBP2UBP14_WT UBP2UBP14_UBP2 UBP2UBP14_UBP14
Actin 1.17 3.30 1.29 0.14 -2.83 2.30 -4.93 -4.04 -5.40 -1.18 2.81 2.31 -0.57 -3.70 -3.22
Bud Neck 3.85 1.71 0.66 -3.75 -1.21 -6.15 -7.77 -11.13 -10.51 -0.98 3.19 -6.62 -9.72 -11.91 -1.98
Bud Site 13.84 23.55* 19.32* 5.08 -6.75 1.46 1.31 -2.97 -4.10 -3.75 15.02 20.51 13.35 -0.97 -7.84
Cell Periphery -2.41 -7.55 -14.11 -13.69 -10.57 8.18 -7.20 -8.56 -9.19 -3.15 6.10 -10.24 -16.24 -16.63 -10.83
Cytoplasm -25.60 -36.23 -23.71 5.00 13.32 4.22 5.00 15.49 13.05 9.19 -16.68 -19.69 -3.91 13.18 16.44
Cytoplasmic Foci 25.60 37.84 37.86 14.20 0.66 0.73 15.77 15.53 18.43 -0.53 20.74 35.20 35.04 25.32 -0.69
Eisosomes 7.90 10.94 8.92 0.20 -4.84 1.35 -3.13 -4.47 -6.11 -1.14 9.38 10.00 6.83 -3.97 -5.11
Endoplasmic Reticulum 6.31 7.83 7.78 3.38 -0.73 2.36 6.03 6.03 6.40 -0.02 6.60 9.68 9.63 7.03 -0.60
Endosome 4.13 16.77 14.66 4.55 -1.76 -5.47 -0.39 0.01 4.64 0.36 4.19 14.94 12.55 7.79 -1.45
Golgi 2.57 12.05 8.60 3.07 -0.47 5.50 -2.38 -2.73 -6.37 0.19 8.84 4.83 3.78 -3.02 -0.50
Lipid Particles -5.29 -9.67 -12.88 -10.52 -7.66 4.78 -10.28 -11.42 -11.74 -2.18 -1.55 -13.92 -17.09 -16.83 -7.60
Mitochondria 6.03 7.70 7.32 1.07 -2.49 -1.74 5.88 5.13 5.68 -3.59 6.16 8.14 7.51 3.07 -2.72
Mitotic Spindle 1.12 2.40 2.77 2.91 0.98 -0.71 -1.31 -1.82 -1.56 -1.19 0.41 1.37 0.12 -0.20 -0.95
None 1.47 0.34 1.19 -2.90 5.14 -0.98 -2.59 -1.26 -1.10 0.46 1.18 -1.34 0.09 -1.34 1.73
Nuclear Periphery 1.49 -2.26 -0.75 -7.96 3.02 -2.48 -9.80 -10.71 -9.49 -0.72 0.78 -6.04 -5.07 -11.22 2.21
Nuclear Periphery Foci -5.39 -9.96 -11.15 -4.09 5.62 4.30 -10.59 -11.57 -13.60 2.96 0.61 -13.70 -15.41 -16.65 5.93
Nucleolus 2.55 1.30 -0.49 -12.20 -3.74 -0.06 0.12 -1.83 -2.78 -8.27 0.54 0.66 -1.65 -3.03 -6.68
Nucleus 2.54 -2.56 1.57 -5.66 11.16 -3.87 -10.59 -9.02 -7.89 1.02 1.08 -8.49 -3.17 -8.53 7.84
Peroxisomes -0.39 13.91 10.03 1.58 -10.83 -4.79 3.52 -3.45 -0.03 -5.58 0.03 14.28 5.99 1.68 -11.40
Vacuole -1.38 -8.37 -22.08 -19.24 -14.93 -13.61 -12.76 -22.56 -17.08 -11.04 -12.69 -15.48 -31.95 -23.57 -18.69
Vacuole Periphery 12.65 14.17 13.27 -0.08 -2.86 -1.64 7.26 2.54 4.73 -6.04 7.56 15.08 12.31 5.64 -5.69
Standard name
Human Ortholog
Description Protein of unknown function; associates with ribosomes and has a putative RNA binding domain; interacts with Tma20p; similar to human GRAP and human DRP1, which interacts with human Tma20p homolog MCT-1; protein abundance increases in response to DNA replication stress
Localization
Cell Percentages cytoplasm (99%)
Cell Cycle Regulation No
Subcompartmental Group cytoplasm-7

Tma22

Tma22


Nearest neighbours ( genes)

correlation threshold

0.6

1.0

0.80


Biological Process (Gene Ontology)

Molecular Function (Gene Ontology)

Cellular Component (Gene Ontology)


Endocytosis
Temp Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Vph1-GFP)
37℃
RT
Cell Cycle Omics

CYCLoPs (Tma22-GFP)
Gene / Allele Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Sac6-tdTomato)
Gene Images
Gene Images
Images are not yet available
Images are not yet available