Standard name | |
---|---|
Human Ortholog | |
Description | Zinc-finger protein; involved in transcriptional control of both nuclear and mitochondrial genes, many of which specify products required for glycerol-based growth, respiration, and other functions; RSF2 has a paralog, TDA9, that arose from the whole genome duplication; relocalizes from nucleus to cytoplasm upon DNA replication stress |
ensLOC | DeepLoc | |||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Localization | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | WT1 | WT2 | WT3 | AF100 | AF140 | AF180 |
Cortical Patches | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 7 | 4 | 1 | 2 | 11 |
Bud | 0 | 2 | 0 | 2 | 0 | 6 | 2 | 6 | 10 | 8 | 10 | 4 | 0 | 0 | 5 | 0 | 0 | 0 | 1 | 10 | 2 | 7 | 7 | 13 |
Bud Neck | 1 | 1 | 10 | 0 | 1 | 3 | 4 | 8 | 2 | 1 | 1 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 3 | 4 | 1 | 1 | 1 | 5 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 8 | 1 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | – | – | – | – | – |
Cell Periphery | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 3 | 0 | 1 | 1 |
Cytoplasm | 219 | 295 | 354 | 225 | 320 | 300 | 426 | 446 | 296 | 293 | 184 | 182 | 288 | 421 | 443 | 8 | 64 | 53 | 196 | 232 | 231 | 171 | 289 | 327 |
Endoplasmic Reticulum | 1 | 4 | 5 | 0 | 2 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 3 | 1 | 2 | 5 | 3 | 1 | 1 | 5 | 3 | 3 | 7 |
Endosome | 3 | 8 | 0 | 0 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 7 | 6 | 3 | 2 | 5 | 1 | 6 | 11 | 2 | 3 | 9 | 7 |
Golgi | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 5 | 1 | 1 | 3 | 2 |
Mitochondria | 2 | 44 | 9 | 29 | 56 | 142 | 249 | 290 | 318 | 290 | 261 | 273 | 4 | 1 | 16 | 3 | 0 | 4 | 12 | 40 | 47 | 16 | 31 | 18 |
Nucleus | 11 | 24 | 2 | 1 | 4 | 3 | 14 | 22 | 9 | 17 | 14 | 8 | 8 | 6 | 3 | 0 | 3 | 4 | 10 | 69 | 2 | 8 | 17 | 7 |
Nuclear Periphery | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 1 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 1 | 1 | 1 | 0 | 0 |
Nucleolus | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
Peroxisomes | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 |
SpindlePole | 1 | 1 | 1 | 0 | 3 | 2 | 7 | 4 | 5 | 1 | 4 | 0 | 0 | 0 | 1 | 0 | 2 | 2 | 6 | 30 | 4 | 3 | 15 | 13 |
Vac/Vac Membrane | 29 | 77 | 0 | 3 | 9 | 11 | 24 | 19 | 15 | 14 | 11 | 28 | 58 | 40 | 36 | 5 | 10 | 11 | 27 | 90 | 31 | 25 | 61 | 51 |
Unique Cell Count | 246 | 419 | 369 | 240 | 368 | 403 | 614 | 667 | 506 | 499 | 379 | 397 | 350 | 456 | 480 | 17 | 79 | 74 | 278 | 538 | 355 | 252 | 455 | 483 |
Labelled Cell Count | 267 | 458 | 383 | 260 | 396 | 467 | 728 | 806 | 659 | 627 | 487 | 497 | 365 | 477 | 509 | 20 | 89 | 78 | 278 | 538 | 355 | 252 | 455 | 483 |
Screen | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | AF100 | AF140 | AF180 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Mean Cell GFP Intensity (1e-4) | 5.2 | 3.8 | 3.3 | 3.1 | 3.5 | 3.1 | 2.9 | 3.0 | 2.5 | 2.5 | 2.7 | 2.5 | 4.4 | 4.7 | 4.2 | 6.4 | 8.6 | 5.9 | 4.5 | 4.4 | 4.9 |
Std Deviation (1e-4) | 1.2 | 0.9 | 0.7 | 0.8 | 1.6 | 1.1 | 0.9 | 0.9 | 0.7 | 1.1 | 1.0 | 1.0 | 1.3 | 1.7 | 1.8 | 2.3 | 14.3 | 2.2 | 1.7 | 1.6 | 1.7 |
Intensity Change (Log2) | – | – | – | -0.06 | 0.1 | -0.08 | -0.19 | -0.12 | -0.38 | -0.36 | -0.28 | -0.39 | 0.42 | 0.51 | 0.37 | 0.96 | 1.4 | 0.85 | 0.47 | 0.44 | 0.59 |
Localization | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Actin | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Bud | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Bud Neck | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Bud Site | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Cell Periphery | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Cyto | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Endoplasmic Reticulum | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Endosome | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Golgi | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Mitochondria | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Nuclear Periphery | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Nuc | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Nucleolus | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Peroxisomes | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
SpindlePole | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Vac | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
R1 | R2 | R3 | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Concentration | 1.1304 | 1.9152 | 1.6445 | 1.3508 | 1.5096 | 1.9356 | -0.1374 | -1.5343 | -1.221 | -1.7972 | -0.9088 | -1.2132 | 4.3789 | 3.9591 | 3.237 | 4.6051 | 2.7137 | 3.2407 |
Actin | 0.0001 | 0.0002 | 0.0003 | 0.001 | 0.0003 | 0.0004 | 0.0757 | 0.001 | 0.0042 | 0.0028 | 0.0109 | 0.0136 | 0.0421 | 0.0003 | 0.0006 | 0.0037 | 0.0005 | 0.0099 |
Bud | 0 | 0.0002 | 0.0001 | 0.0002 | 0.0002 | 0.0001 | 0.0015 | 0.0041 | 0.0013 | 0.0019 | 0.005 | 0.0015 | 0.0121 | 0.0028 | 0.0021 | 0.0005 | 0 | 0.0005 |
Bud Neck | 0.0003 | 0.0007 | 0.0012 | 0.0008 | 0.0009 | 0.0048 | 0.0069 | 0.0007 | 0.0038 | 0.0009 | 0.0066 | 0.004 | 0.0008 | 0.0001 | 0.0014 | 0.126 | 0.0001 | 0.0017 |
Bud Periphery | 0 | 0.0002 | 0.0001 | 0.0002 | 0.0001 | 0.0002 | 0.002 | 0.0052 | 0.0013 | 0.0031 | 0.016 | 0.0036 | 0.0041 | 0.0032 | 0.0109 | 0.0004 | 0 | 0.0006 |
Bud Site | 0.0002 | 0.0026 | 0.0009 | 0.0003 | 0.0002 | 0.0003 | 0.0087 | 0.0049 | 0.0062 | 0.0006 | 0.0112 | 0.0019 | 0.0386 | 0.0021 | 0.0138 | 0.0852 | 0 | 0.0007 |
Cell Periphery | 0 | 0.0003 | 0.0001 | 0.0001 | 0.0001 | 0.0001 | 0.0004 | 0.0002 | 0.0002 | 0.0001 | 0.0008 | 0.0004 | 0.0004 | 0.0001 | 0.0009 | 0.0003 | 0 | 0.0001 |
Cytoplasm | 0.1657 | 0.3603 | 0.2863 | 0.3227 | 0.3723 | 0.3503 | 0.1255 | 0.2103 | 0.1549 | 0.1819 | 0.1525 | 0.1528 | 0.1189 | 0.0648 | 0.0957 | 0.0398 | 0.1387 | 0.1632 |
Cytoplasmic Foci | 0.0037 | 0.0054 | 0.0073 | 0.0111 | 0.0055 | 0.0087 | 0.0239 | 0.0175 | 0.0211 | 0.0156 | 0.009 | 0.0186 | 0.0096 | 0.0079 | 0.0041 | 0.2272 | 0.0094 | 0.0307 |
Eisosomes | 0 | 0 | 0 | 0.0001 | 0 | 0 | 0.0007 | 0.0001 | 0.0001 | 0.0001 | 0.0002 | 0.0002 | 0.0003 | 0.0002 | 0.0002 | 0.0001 | 0.0001 | 0.0001 |
Endoplasmic Reticulum | 0.0022 | 0.0061 | 0.0046 | 0.0049 | 0.0087 | 0.0048 | 0.0078 | 0.0061 | 0.0057 | 0.0072 | 0.0071 | 0.0067 | 0.0043 | 0.0012 | 0.0015 | 0.0002 | 0.0006 | 0.0019 |
Endosome | 0.0024 | 0.0032 | 0.0058 | 0.0124 | 0.0074 | 0.0107 | 0.0178 | 0.0081 | 0.0146 | 0.0153 | 0.0122 | 0.0118 | 0.0295 | 0.0008 | 0.0016 | 0.0013 | 0.0002 | 0.0033 |
Golgi | 0 | 0.0001 | 0.0001 | 0.0002 | 0.0001 | 0.0002 | 0.0057 | 0.0008 | 0.0014 | 0.0004 | 0.0018 | 0.0032 | 0.0045 | 0.0001 | 0.0003 | 0.0022 | 0.0001 | 0.0003 |
Lipid Particles | 0.0001 | 0.0004 | 0.0004 | 0.0012 | 0.0005 | 0.0008 | 0.0097 | 0.0019 | 0.0039 | 0.002 | 0.0023 | 0.0049 | 0.0099 | 0.0011 | 0.0005 | 0.0016 | 0.0005 | 0.0009 |
Mitochondria | 0.0003 | 0.0005 | 0.0006 | 0.0011 | 0.0008 | 0.0007 | 0.0056 | 0.0028 | 0.0018 | 0.0019 | 0.0035 | 0.016 | 0.0064 | 0.0005 | 0.0084 | 0.0002 | 0.0001 | 0.0005 |
None | 0.1617 | 0.3676 | 0.3196 | 0.3427 | 0.4301 | 0.2747 | 0.1176 | 0.3638 | 0.2797 | 0.1439 | 0.1914 | 0.1328 | 0.5785 | 0.8454 | 0.7035 | 0.4656 | 0.7062 | 0.5994 |
Nuclear Periphery | 0.0057 | 0.0068 | 0.0069 | 0.0112 | 0.0114 | 0.0086 | 0.0559 | 0.0197 | 0.0263 | 0.0339 | 0.0186 | 0.041 | 0.0356 | 0.0012 | 0.0034 | 0.0002 | 0.0014 | 0.0036 |
Nucleolus | 0.0031 | 0.0021 | 0.0029 | 0.0021 | 0.0017 | 0.0036 | 0.004 | 0.0039 | 0.0085 | 0.0041 | 0.0114 | 0.0065 | 0.0031 | 0.0015 | 0.0023 | 0.0005 | 0.0002 | 0.0018 |
Nucleus | 0.6467 | 0.2197 | 0.3463 | 0.2702 | 0.1455 | 0.3101 | 0.4442 | 0.3033 | 0.3801 | 0.5224 | 0.4992 | 0.5017 | 0.0731 | 0.0414 | 0.1414 | 0.0011 | 0.1394 | 0.1418 |
Peroxisomes | 0.0001 | 0.0001 | 0.0001 | 0.0003 | 0.0001 | 0.0001 | 0.0142 | 0.0004 | 0.0021 | 0.0008 | 0.001 | 0.0011 | 0.0056 | 0.0003 | 0.0015 | 0.006 | 0.0006 | 0.0011 |
Punctate Nuclear | 0.0063 | 0.0187 | 0.0131 | 0.0098 | 0.0073 | 0.0172 | 0.0664 | 0.0411 | 0.0778 | 0.0483 | 0.03 | 0.0724 | 0.0081 | 0.0244 | 0.0031 | 0.0375 | 0.0017 | 0.0368 |
Vacuole | 0.001 | 0.0043 | 0.003 | 0.007 | 0.006 | 0.0029 | 0.0037 | 0.0035 | 0.0038 | 0.0104 | 0.0077 | 0.0032 | 0.0084 | 0.0006 | 0.0026 | 0.0003 | 0.0001 | 0.0009 |
Vacuole Periphery | 0.0001 | 0.0003 | 0.0003 | 0.0006 | 0.0007 | 0.0004 | 0.0023 | 0.0008 | 0.0011 | 0.0022 | 0.0016 | 0.0023 | 0.0061 | 0.0001 | 0.0003 | 0 | 0 | 0.0002 |
R1 | R2 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Gene Expression | 12.3843 | 9.2852 | 9.1867 | 11.9158 | 13.2944 | 9.3164 | 11.9159 | 9.9921 | 10.9404 | 14.8249 |
Translational Efficiency | – | – | – | – | – | – | – | – | – | – |
Dataset | Hit |
---|---|
Protein Concentration | ✘ |
Protein Localization | ✘ |
Gene Expression | ✘ |
Translational Efficiency | – |
Temp | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Vph1-GFP) |
---|---|---|---|---|
37℃ | ||||
RT |
Gene / Allele | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Sac6-tdTomato) |
---|
Gene | Images |
---|
Gene | Images |
---|