Standard name | |
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Human Ortholog | |
Description | Nuclear pore protein; involved in nuclear export of pre-tRNA and in re-export of mature tRNAs after their retrograde import from the cytoplasm; deletion mutation extends replicative lifespan, as does exclusion of Los1p from the nucleus in response to caloric restriction |
ensLOC | DeepLoc | |||||||||||||||||||||||
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Localization | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | WT1 | WT2 | WT3 | AF100 | AF140 | AF180 |
Cortical Patches | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 1 | 1 |
Bud | 0 | 1 | 2 | 1 | 1 | 6 | 2 | 12 | 4 | 4 | 4 | 8 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 10 | 7 | 8 | 5 | 6 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 0 | 1 | 4 | 3 | 3 | 4 | 2 | 4 | 5 | 0 | 0 | 0 | 0 | 0 | 0 | – | – | – | – | – | – |
Cell Periphery | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 6 | 17 | 19 | 17 | 30 | 23 | 43 | 43 | 8 | 25 | 16 | 15 | 22 | 37 | 35 | 8 | 4 | 9 | 2 | 4 | 8 | 4 | 7 | 6 |
Endoplasmic Reticulum | 4 | 0 | 2 | 2 | 0 | 0 | 4 | 1 | 6 | 7 | 1 | 2 | 1 | 4 | 5 | 2 | 1 | 2 | 3 | 3 | 11 | 3 | 3 | 7 |
Endosome | 0 | 0 | 3 | 1 | 14 | 3 | 2 | 2 | 3 | 2 | 0 | 1 | 1 | 8 | 4 | 2 | 1 | 1 | 5 | 13 | 15 | 10 | 30 | 45 |
Golgi | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 2 | 2 | 0 | 1 | 3 | 3 |
Mitochondria | 1 | 3 | 42 | 74 | 107 | 177 | 223 | 310 | 206 | 257 | 156 | 252 | 2 | 1 | 10 | 2 | 1 | 0 | 1 | 3 | 21 | 4 | 7 | 3 |
Nucleus | 9 | 34 | 44 | 66 | 64 | 57 | 65 | 91 | 33 | 30 | 27 | 31 | 9 | 13 | 13 | 5 | 4 | 9 | 9 | 39 | 17 | 25 | 20 | 9 |
Nuclear Periphery | 36 | 62 | 58 | 101 | 98 | 49 | 69 | 38 | 37 | 59 | 25 | 52 | 35 | 28 | 28 | 10 | 6 | 14 | 134 | 174 | 267 | 39 | 79 | 74 |
Nucleolus | 2 | 0 | 0 | 3 | 2 | 5 | 3 | 9 | 4 | 4 | 3 | 7 | 2 | 5 | 3 | 2 | 0 | 0 | 1 | 6 | 1 | 2 | 1 | 1 |
Peroxisomes | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 1 | 0 | 0 | 1 | 0 | 1 | 0 | 2 | 0 | 2 | 3 | 2 | 0 | 2 | 0 | 0 | 0 | 1 | 4 | 9 | 8 | 3 | 2 | 3 |
Vac/Vac Membrane | 133 | 252 | 222 | 84 | 134 | 63 | 71 | 72 | 31 | 42 | 31 | 58 | 116 | 114 | 116 | 43 | 32 | 40 | 11 | 59 | 51 | 36 | 64 | 53 |
Unique Cell Count | 158 | 300 | 331 | 266 | 349 | 283 | 368 | 447 | 248 | 317 | 196 | 302 | 163 | 179 | 181 | 64 | 43 | 61 | 181 | 333 | 418 | 145 | 230 | 221 |
Labelled Cell Count | 193 | 371 | 392 | 350 | 451 | 388 | 485 | 583 | 336 | 434 | 270 | 433 | 188 | 213 | 214 | 76 | 49 | 76 | 181 | 333 | 418 | 145 | 230 | 221 |
Screen | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | AF100 | AF140 | AF180 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Mean Cell GFP Intensity (1e-4) | 9.9 | 8.0 | 5.6 | 5.4 | 5.1 | 4.5 | 4.1 | 4.1 | 3.6 | 3.5 | 3.5 | 3.4 | 7.3 | 7.4 | 6.3 | 9.7 | 10.2 | 10.9 | 8.4 | 8.5 | 9.1 |
Std Deviation (1e-4) | 1.6 | 1.4 | 1.0 | 1.1 | 1.2 | 1.2 | 1.0 | 1.2 | 0.7 | 0.9 | 1.0 | 1.0 | 1.2 | 1.4 | 1.1 | 2.2 | 2.5 | 1.9 | 1.5 | 1.3 | 1.6 |
Intensity Change (Log2) | – | – | – | -0.04 | -0.14 | -0.31 | -0.43 | -0.46 | -0.65 | -0.65 | -0.66 | -0.74 | 0.4 | 0.41 | 0.17 | 0.8 | 0.87 | 0.97 | 0.58 | 0.61 | 0.7 |
Localization | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Cortical Patches | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cell Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 0.3 | 1.4 | 1.2 | 2.8 | 2.0 | -1.4 | 1.1 | 1.1 | -0.4 | 2.9 | 5.1 | 4.8 | 0 | 0 | 0 |
Endoplasmic Reticulum | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Endosome | 0 | 2.6 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Golgi | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Mitochondria | 4.6 | 5.7 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | -4.2 | -4.7 | -2.6 | -2.2 | 0 | -2.9 |
Nucleus | 3.6 | 1.8 | 2.3 | 1.6 | 2.6 | 0 | -1.5 | 0.2 | -1.2 | -2.6 | -2.1 | -2.1 | -1.2 | -0.7 | 0.3 |
Nuclear Periphery | 5.6 | 3.3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1.1 | -0.5 | -0.6 | -0.4 | -0.6 | 1.0 |
Nucleolus | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Peroxisomes | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Vacuole | -8.6 | -7.5 | -11.1 | -12.8 | -14.5 | -13.1 | -13.9 | -11.4 | -12.1 | 0.9 | -0.8 | -0.7 | 0 | 1.0 | -0.2 |
R1 | R2 | R3 | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Concentration | 5.6824 | 8.2413 | 7.4834 | 7.629 | 6.0471 | 7.4623 | 7.4914 | 9.1493 | 8.2096 | 7.2793 | 8.0358 | 8.5149 | 8.8449 | 9.6916 | 9.0237 | 9.087 | 8.4961 | 8.7151 |
Actin | 0.0833 | 0.0107 | 0.0081 | 0.0005 | 0.1296 | 0.0036 | 0.0437 | 0.0004 | 0.0118 | 0.0023 | 0.0354 | 0.0014 | 0.0264 | 0.0002 | 0.0155 | 0.0033 | 0.0034 | 0.0013 |
Bud | 0.0006 | 0.0004 | 0.0002 | 0 | 0.0006 | 0.0001 | 0.0006 | 0 | 0.0001 | 0.0005 | 0.0004 | 0 | 0.0002 | 0.0112 | 0.0001 | 0.0001 | 0 | 0 |
Bud Neck | 0.0018 | 0.0004 | 0.0002 | 0.0001 | 0.003 | 0.0005 | 0.0039 | 0.0001 | 0.0012 | 0.0019 | 0.001 | 0.0004 | 0.0033 | 0 | 0.0006 | 0.0004 | 0.0003 | 0.0003 |
Bud Periphery | 0.0012 | 0.0003 | 0.0003 | 0 | 0.001 | 0.0005 | 0.0007 | 0 | 0.0001 | 0.0008 | 0.0012 | 0.0001 | 0.0005 | 0.0216 | 0.0005 | 0.0003 | 0.0001 | 0.0001 |
Bud Site | 0.004 | 0.0035 | 0.0003 | 0 | 0.0019 | 0.0001 | 0.007 | 0 | 0.009 | 0.0024 | 0.0018 | 0.0001 | 0.0006 | 0.0013 | 0.0014 | 0.0001 | 0.0002 | 0.0001 |
Cell Periphery | 0.0009 | 0.0001 | 0.0001 | 0 | 0.0002 | 0.0001 | 0.0003 | 0 | 0.0001 | 0.0002 | 0.0001 | 0 | 0.0004 | 0.0002 | 0.0018 | 0 | 0.0001 | 0 |
Cytoplasm | 0.0079 | 0.0024 | 0.0019 | 0.0006 | 0.0011 | 0.0005 | 0.007 | 0.0007 | 0.005 | 0.008 | 0.0042 | 0.0059 | 0.0019 | 0.0013 | 0.0073 | 0.001 | 0.0015 | 0.0005 |
Cytoplasmic Foci | 0.0405 | 0.0011 | 0.0034 | 0 | 0.0104 | 0.0001 | 0.0291 | 0 | 0.0109 | 0.0129 | 0.0131 | 0.0024 | 0.009 | 0.0001 | 0.0048 | 0 | 0.0302 | 0.0024 |
Eisosomes | 0.0065 | 0.0002 | 0.0001 | 0 | 0.0005 | 0.0001 | 0.0006 | 0 | 0.0001 | 0.0001 | 0.0001 | 0 | 0.0002 | 0 | 0.0002 | 0 | 0 | 0 |
Endoplasmic Reticulum | 0.017 | 0.0084 | 0.0048 | 0.0028 | 0.0069 | 0.0029 | 0.0052 | 0.0032 | 0.0121 | 0.0132 | 0.0064 | 0.0049 | 0.0148 | 0.0023 | 0.0088 | 0.0086 | 0.0147 | 0.0026 |
Endosome | 0.0363 | 0.0011 | 0.0088 | 0.0005 | 0.0152 | 0.0033 | 0.0218 | 0.0005 | 0.0225 | 0.0436 | 0.0256 | 0.0113 | 0.0291 | 0.0004 | 0.0034 | 0.0016 | 0.0417 | 0.0015 |
Golgi | 0.0183 | 0.0007 | 0.003 | 0 | 0.0102 | 0.001 | 0.0139 | 0 | 0.0063 | 0.0056 | 0.0042 | 0.0009 | 0.006 | 0 | 0.0028 | 0.0001 | 0.0081 | 0.0014 |
Lipid Particles | 0.0241 | 0.0027 | 0.0053 | 0 | 0.0283 | 0.0004 | 0.0211 | 0 | 0.0155 | 0.0047 | 0.0094 | 0.0017 | 0.0046 | 0 | 0.0017 | 0.0001 | 0.0635 | 0.0012 |
Mitochondria | 0.02 | 0.0012 | 0.0044 | 0.0005 | 0.0084 | 0.0095 | 0.005 | 0.0005 | 0.0009 | 0.0669 | 0.0053 | 0.0007 | 0.0024 | 0.0004 | 0.0011 | 0.0013 | 0.0009 | 0.0006 |
None | 0.008 | 0.0002 | 0.0004 | 0.0001 | 0.0023 | 0.0002 | 0.0041 | 0.0001 | 0.0008 | 0.0115 | 0.0032 | 0.0008 | 0.001 | 0.0006 | 0.0056 | 0.0003 | 0.0004 | 0.0001 |
Nuclear Periphery | 0.6076 | 0.8222 | 0.8285 | 0.8083 | 0.7037 | 0.8664 | 0.7181 | 0.8314 | 0.7998 | 0.7574 | 0.7386 | 0.8666 | 0.8304 | 0.8899 | 0.8403 | 0.8864 | 0.7408 | 0.8926 |
Nucleolus | 0.0021 | 0.006 | 0.0003 | 0.0004 | 0.003 | 0.0006 | 0.0014 | 0.0004 | 0.0002 | 0.0007 | 0.0026 | 0.0006 | 0.0002 | 0.0003 | 0.0002 | 0.0005 | 0.0006 | 0.0003 |
Nucleus | 0.0706 | 0.1211 | 0.1111 | 0.1752 | 0.034 | 0.0986 | 0.0719 | 0.1504 | 0.08 | 0.0459 | 0.1156 | 0.0905 | 0.0501 | 0.0512 | 0.0816 | 0.0773 | 0.034 | 0.0782 |
Peroxisomes | 0.0212 | 0.0006 | 0.0007 | 0 | 0.0117 | 0.0001 | 0.0121 | 0 | 0.0011 | 0.0016 | 0.0111 | 0.0003 | 0.0032 | 0 | 0.0022 | 0 | 0.0291 | 0.0075 |
Punctate Nuclear | 0.0157 | 0.0014 | 0.0021 | 0.0009 | 0.0074 | 0.0007 | 0.0236 | 0.0008 | 0.0018 | 0.0025 | 0.0096 | 0.0034 | 0.0023 | 0.0004 | 0.0024 | 0.0015 | 0.0103 | 0.0007 |
Vacuole | 0.003 | 0.0013 | 0.0014 | 0.0005 | 0.0027 | 0.0013 | 0.0021 | 0.0006 | 0.004 | 0.0073 | 0.0035 | 0.0017 | 0.0041 | 0.0016 | 0.001 | 0.0013 | 0.0033 | 0.001 |
Vacuole Periphery | 0.0091 | 0.0141 | 0.0148 | 0.0096 | 0.0179 | 0.0095 | 0.0071 | 0.011 | 0.0166 | 0.01 | 0.0077 | 0.0063 | 0.0092 | 0.017 | 0.0166 | 0.0158 | 0.0171 | 0.0077 |
R1 | R2 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Gene Expression | 37.916 | 28.9671 | 29.4724 | 41.2521 | 32.2678 | 23.7052 | 32.5346 | 31.6897 | 25.5839 | 41.0797 |
Translational Efficiency | 0.6672 | 0.7986 | 0.8132 | 0.4715 | 0.5636 | 0.7189 | 0.6506 | 0.4536 | 0.641 | 0.4766 |
Dataset | Hit |
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Protein Concentration | ✘ |
Protein Localization | ✘ |
Gene Expression | ✘ |
Translational Efficiency | ✘ |
Temp | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Vph1-GFP) |
---|---|---|---|---|
37℃ | ||||
RT |
Gene / Allele | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Sac6-tdTomato) |
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Gene | Images |
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Gene | Images |
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