Standard name
Human Ortholog
Description WD40 repeat-containing protein associated with the CCR4-NOT complex; interacts in a Ccr4p-dependent manner with Ssn2p; also interacts with Fis1p, Mdv1p and Dnm1p and plays a role in mitochondrial fission; CAF4 has a paralog, MDV1, that arose from the whole genome duplication
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Micrographs

ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0 0 0.06 0.05 0.05 0 0 – 0 0 0 0 0.11 0.05 0.05 0.05 0 0 0 0 0 0.06 0 0
Bud 0 0 0 0.07 0 0 0 – 0 0 0.05 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Neck 0 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Site 0 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0 0 0 – – – – – –
Cell Periphery 0 0.05 0 0.09 0.05 0 0 – 0 0 0 0 0 0.06 0 0.16 0.13 0.12 0 0 0 0 0 0
Cytoplasm 0 0 0.08 0 0 0 0 – 0 0 0 0.06 0.05 0.13 0.19 0.06 0.08 0.08 0 0 0 0 0 0
Endoplasmic Reticulum 0 0.07 0.17 0.05 0 0.06 0 – 0 0 0 0 0.11 0 0.08 0 0 0 0 0 0 0 0 0
Endosome 0 0 0 0 0.1 0.05 0.11 – 0 0 0 0 0 0.1 0 0 0.09 0 0 0 0 0 0.05 0.05
Golgi 0 0.16 0 0.22 0.16 0 0 – 0 0 0 0 0.12 0.16 0.24 0.5 0.29 0.39 0 0.12 0.05 0.06 0.05 0.07
Mitochondria 0.98 0.79 0.64 0.8 0.65 0.78 0.75 – 0.87 0.88 0.92 0.92 0.82 0.55 0.3 0.11 0.07 0.07 0.82 0.69 0.71 0.69 0.71 0.65
Nucleus 0 0 0.06 0 0 0 0 – 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nuclear Periphery 0 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nucleolus 0 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Peroxisomes 0 0 0 0 0.05 0.05 0.08 – 0 0 0 0 0 0.11 0 0.07 0.14 0 0.05 0 0.06 0.08 0 0
SpindlePole 0 0 0 0 0 0 0.08 – 0.08 0.06 0.06 0.07 0 0 0.08 0 0 0 0 0 0 0 0 0
Vac/Vac Membrane 0.11 0.21 0.11 0.05 0.12 0.08 0.08 – 0.08 0 0 0.05 0.05 0.11 0.13 0.18 0.21 0.25 0 0.07 0.07 0 0.11 0.12
ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0 6 2 4 11 3 1 – 1 1 3 1 9 6 6 12 1 6 3 3 2 2 4 5
Bud 2 0 0 5 4 9 13 – 10 8 14 15 1 3 1 4 9 2 0 1 0 0 0 2
Bud Neck 0 0 0 0 0 1 0 – 2 0 1 2 0 0 0 0 0 0 0 0 0 0 0 1
Bud Site 0 0 0 0 0 0 4 – 2 3 1 3 0 0 0 1 3 1 – – – – – –
Cell Periphery 3 7 0 7 10 6 4 – 3 3 0 4 1 7 5 38 26 23 0 0 0 0 0 0
Cytoplasm 1 2 3 3 9 9 11 – 11 12 8 22 4 15 22 15 16 15 0 1 0 0 2 1
Endoplasmic Reticulum 4 10 6 4 8 15 2 – 8 5 12 6 9 2 9 4 7 8 1 1 1 0 0 1
Endosome 1 3 0 1 22 13 42 – 7 7 0 7 0 12 5 6 18 7 6 5 2 1 8 11
Golgi 5 21 1 16 33 5 4 – 1 1 1 0 10 19 28 122 59 75 6 17 3 2 8 17
Mitochondria 167 107 23 59 137 196 285 – 214 235 265 362 70 66 35 26 15 14 141 102 52 28 128 154
Nucleus 0 0 2 1 1 4 7 – 4 5 6 5 0 1 2 0 4 5 0 0 0 0 1 0
Nuclear Periphery 3 2 0 0 0 4 5 – 1 1 3 1 0 0 1 5 0 3 0 0 0 0 0 1
Nucleolus 0 2 0 0 0 1 0 – 2 2 6 0 0 1 0 4 1 0 0 0 0 0 0 0
Peroxisomes 1 1 0 0 10 12 32 – 6 1 2 4 0 13 4 18 29 8 8 2 4 3 2 6
SpindlePole 0 0 1 0 9 7 32 – 19 15 16 27 0 3 9 8 7 6 0 0 0 0 0 0
Vac/Vac Membrane 19 28 4 4 25 20 32 – 19 8 7 18 4 13 15 43 44 48 2 11 5 0 20 28
Unique Cell Count 170 135 36 74 211 250 380 247 268 288 395 85 119 117 243 206 192 173 150 74 41 181 239
Labelled Cell Count 206 189 42 104 279 305 474 310 307 345 477 108 161 142 306 239 221 173 150 74 41 181 239


Mitochondria

(Huh et al. Nature 2003 425:686)
Screen WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 AF100 AF140 AF180
Mean Cell GFP Intensity (1e-4) 6.0 7.1 6.2 6.9 6.8 5.5 5.4 – 4.6 4.7 4.1 4.1 6.3 7.0 7.1 8.5 8.6 7.9 – 6.4 6.9
Std Deviation (1e-4) 0.8 1.1 0.9 1.6 1.2 1.2 1.0 – 0.9 1.0 0.8 0.9 1.1 1.1 1.3 1.2 1.7 1.3 – 1.0 1.1
Intensity Change (Log2) – – – 0.15 0.13 -0.17 -0.21 – -0.44 -0.41 -0.6 -0.59 0.01 0.17 0.18 0.46 0.47 0.34 – 0.04 0.14


Localization RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3
Actin – – – – – – – – – – – – – – –
Bud 0 0 0 0 – – – – – 0 0 0 0 0 0
Bud Neck 0 0 0 0 – – – – – 0 0 0 0 0 0
Bud Site 0 0 0 0 – – – – – 0 0 0 0 0 0
Cell Periphery 0 0 0 0 – – – – – 0 0 0 0 0 0
Cyto – – – – – – – – – – – – – – –
Endoplasmic Reticulum 0 0 0 0 – – – – – 0 0 0 0 0 0
Endosome 0 0 0 0 – – – – – 0 0 0 0 0 0
Golgi 2.6 0 0 0 – – – – – 0 0 2.8 5.3 3.3 4.2
Mitochondria 1.8 0.1 1.9 1.5 – – – – – 2.2 -0.9 -3.7 -7.8 -8.6 -8.5
Nuclear Periphery 0 0 0 0 – – – – – 0 0 0 0 0 0
Nuc – – – – – – – – – – – – – – –
Nucleolus 0 0 0 0 – – – – – 0 0 0 0 0 0
Peroxisomes 0 0 0 0 – – – – – 0 0 0 0 0 0
SpindlePole 0 0 0 0 – – – – – 0 0 0 0 0 0
Vac – – – – – – – – – – – – – – –
Cortical Patches 0 0 0 0 – – – – – 0 0 0 0 0 0
Cytoplasm 0 0 0 0 – – – – – 0 0 1.5 0 0 0
Nucleus 0 0 0 0 – – – – – 0 0 0 0 0 0
Vacuole 0 0 0 0 – – – – – 0 0 0 1.0 1.4 1.8

Images

Circle plot not available

Protein Concentration and Protein Localization Data

R1 R2 R3
G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase
Concentration 0.886 1.4908 1.0497 0.9705 0.7166 1.2672 1.796 2.0873 2.3165 2.2005 1.3205 2.0079 0.9685 1.1271 1.0251 1.3157 0.673 0.6816
Actin 0.0348 0.0302 0.0142 0.0009 0.0826 0.0144 0.0944 0.0444 0.04 0.0062 0.0061 0.0154 0.0433 0.0091 0.0221 0.0086 0.0082 0.0204
Bud 0.0011 0.003 0.0023 0.0013 0.0013 0.0004 0.0016 0.0042 0.0036 0.0009 0.0015 0.0003 0.0014 0.0052 0.0012 0.0006 0.0013 0.0007
Bud Neck 0.0045 0.0012 0.0058 0.0002 0.002 0.0008 0.0043 0.0021 0.0013 0.0139 0.0011 0.0007 0.0021 0.0008 0.001 0.0004 0.0009 0.0045
Bud Periphery 0.0025 0.0055 0.0049 0.0069 0.0029 0.0009 0.0025 0.0066 0.008 0.0025 0.0041 0.0007 0.0025 0.0037 0.0019 0.0018 0.0064 0.0019
Bud Site 0.0068 0.0388 0.0106 0.0003 0.0035 0.0005 0.0138 0.0579 0.0147 0.0039 0.0021 0.0017 0.0064 0.0148 0.0109 0.0007 0.0008 0.0013
Cell Periphery 0.0012 0.0025 0.004 0.0002 0.0006 0.0004 0.0014 0.0023 0.003 0.0007 0.0004 0.0003 0.0009 0.0012 0.0005 0.0003 0.0004 0.0008
Cytoplasm 0.0039 0.0081 0.0037 0.0002 0.0008 0.001 0.0053 0.0049 0.0066 0.0014 0.0013 0.0004 0.0034 0.0078 0.0055 0.0008 0.0011 0.0022
Cytoplasmic Foci 0.033 0.0304 0.0346 0.0088 0.0201 0.0157 0.055 0.0375 0.0257 0.0388 0.0268 0.0106 0.0339 0.0352 0.0299 0.0086 0.0344 0.017
Eisosomes 0.0015 0.0009 0.0018 0.0001 0.0007 0.0008 0.0014 0.0007 0.002 0.0003 0.0002 0.0005 0.0015 0.0003 0.0008 0.0003 0.0002 0.0007
Endoplasmic Reticulum 0.0026 0.0009 0.0014 0.0001 0.0004 0.0009 0.0015 0.0014 0.0011 0.0003 0.0014 0.0002 0.0036 0.0006 0.0008 0.0005 0.0004 0.0009
Endosome 0.0806 0.083 0.0595 0.0336 0.0367 0.0444 0.0725 0.0709 0.0385 0.0407 0.1148 0.0264 0.0963 0.0611 0.0545 0.0532 0.0696 0.039
Golgi 0.0731 0.0909 0.0386 0.0432 0.0494 0.0625 0.0561 0.0683 0.0507 0.0136 0.0797 0.0463 0.0838 0.0996 0.0705 0.0389 0.039 0.0725
Lipid Particles 0.0339 0.0081 0.0068 0.0064 0.0039 0.0163 0.0347 0.0119 0.0116 0.0131 0.0306 0.0027 0.0449 0.0045 0.0142 0.009 0.0277 0.0132
Mitochondria 0.626 0.6466 0.7548 0.8864 0.7454 0.8104 0.5848 0.6126 0.7311 0.8247 0.6533 0.8489 0.5632 0.7073 0.7386 0.8529 0.7668 0.7772
None 0.0297 0.0009 0.0027 0.0001 0.0002 0.0003 0.0083 0.0052 0.0044 0.0014 0.0004 0.0004 0.0221 0.0006 0.0013 0.0005 0.0004 0.001
Nuclear Periphery 0.003 0.0003 0.0012 0.0001 0.0002 0.0004 0.002 0.0006 0.0004 0.0002 0.0011 0.0001 0.012 0.0002 0.001 0.0012 0.001 0.0011
Nucleolus 0.0022 0.0005 0.0006 0.0001 0.0002 0.0002 0.0039 0.0012 0.0003 0.0003 0.0004 0.0002 0.0019 0.0004 0.0002 0.0004 0.0015 0.0003
Nucleus 0.0014 0.0006 0.0008 0.0001 0.0002 0.0004 0.0022 0.0009 0.0004 0.0002 0.0005 0.0001 0.0048 0.0004 0.0005 0.0004 0.0006 0.0004
Peroxisomes 0.0394 0.0347 0.0317 0.0082 0.0346 0.0207 0.0386 0.0452 0.0473 0.0255 0.0595 0.0412 0.0495 0.0357 0.037 0.0067 0.0291 0.0359
Punctate Nuclear 0.0017 0.0002 0.0007 0 0.0001 0.0005 0.0071 0.0002 0.0003 0.0004 0.0006 0 0.0069 0.0001 0.0012 0.0008 0.0008 0.0028
Vacuole 0.0111 0.009 0.0135 0.0012 0.0066 0.0047 0.0053 0.0166 0.0056 0.0061 0.0104 0.0011 0.008 0.0074 0.0041 0.0064 0.0062 0.0027
Vacuole Periphery 0.0061 0.0039 0.0058 0.0014 0.0077 0.0037 0.0032 0.0045 0.0031 0.0049 0.0037 0.0018 0.0079 0.0041 0.0024 0.0069 0.0034 0.0036

Sequencing Data

R1 R2
G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Post-START S/G2 Metaphase Anaphase Telophase
Gene Expression 13.1358 12.2531 10.9866 10.9804 13.3287 11.9869 14.583 15.6784 10.4573 15.9409
Translational Efficiency 0.5756 0.4657 0.5427 0.4029 0.4275 0.462 0.3901 0.2986 0.3969 0.4212

Hit Data

Dataset Hit
Protein Concentration ✘
Protein Localization ✔
Gene Expression ✘
Translational Efficiency ✘

Micrographs

Cell Count

R1 R2 R1 & R2
WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14
1899 1339 373 918 1923 1742 416 1110 3822 3081 789 2028

Protein Abundance

R1 R2 R1 & R2
WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14
Mean 706.57 796.80 1052.24 841.58 765.09 802.16 1008.28 865.18 736.01 799.83 1029.06 854.50
Standard Deviation 81.75 125.06 121.86 127.60 103.49 109.87 106.09 109.94 97.80 116.75 115.92 118.84
Intensity Change Log 2 — 0.173385 0.574559 0.252268 — 0.068261 0.398195 0.177371 — 0.119689 0.485564 0.213816

Localization Score (DeepLoc)

R1 R2 R1 & R2
WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14
Actin 0.002719 0.007585 0.066377 0.052344 0.004750 0.004749 0.016567 0.026564 0.003741 0.005982 0.040115 0.038234
Bud Neck 0.003425 0.002627 0.009775 0.021448 0.002238 0.001756 0.011640 0.015701 0.002828 0.002134 0.010758 0.018303
Bud Site 0.007880 0.014390 0.111528* 0.205843* 0.010565 0.007289 0.118360* 0.153587* 0.009231 0.010375 0.115130* 0.177241*
Cell Periphery 0.000552 0.000645 0.000815 0.000826 0.000868 0.000459 0.000263 0.000504 0.000711 0.000540 0.000524 0.000650
Cytoplasm 0.002961 0.003259 0.014359 0.075775 0.002434 0.002288 0.038125 0.065200 0.002696 0.002710 0.026889 0.069987
Cytoplasmic Foci 0.029814 0.035408 0.128920 0.122872 0.027536 0.032011 0.156642 0.137201 0.028668 0.033487 0.143536 0.130715
Eisosomes 0.000134 0.000132 0.000281 0.000311 0.000113 0.000116 0.000155 0.000210 0.000123 0.000123 0.000214 0.000256
Endoplasmic Reticulum 0.000617 0.000714 0.012364 0.007859 0.000423 0.000391 0.008470 0.002383 0.000519 0.000531 0.010311 0.004862
Endosome 0.049546 0.070727 0.087424 0.057345 0.048603 0.063072 0.076045 0.069374 0.049071 0.066399 0.081424 0.063929
Golgi 0.106653 0.112116* 0.166961* 0.065664 0.092311 0.127567* 0.077770 0.086780 0.099437 0.120852* 0.119935* 0.077222
Lipid Particles 0.003671 0.003539 0.002961 0.004295 0.001033 0.003546 0.004280 0.002252 0.002344 0.003543 0.003656 0.003177
Mitochondria 0.747113* 0.680201* 0.105456* 0.130982* 0.761102* 0.707489* 0.094230 0.184230* 0.754151* 0.695630* 0.099537 0.160126*
Mitotic Spindle 0.003496 0.007702 0.116393* 0.051856 0.004828 0.005422 0.158918* 0.069657 0.004166 0.006413 0.138814* 0.061599
None 0.000459 0.000264 0.000185 0.000574 0.000180 0.000166 0.000362 0.000333 0.000319 0.000209 0.000278 0.000442
Nuclear Periphery 0.000081 0.000081 0.000298 0.000511 0.000028 0.000053 0.000826 0.000388 0.000055 0.000065 0.000576 0.000444
Nuclear Periphery Foci 0.000154 0.000224 0.001983 0.001155 0.000095 0.000126 0.002362 0.000554 0.000124 0.000169 0.002183 0.000826
Nucleolus 0.000503 0.000415 0.000392 0.001258 0.000208 0.000877 0.002601 0.000541 0.000355 0.000677 0.001557 0.000865
Nucleus 0.000331 0.001067 0.004765 0.014263 0.000201 0.000370 0.017194 0.007147 0.000266 0.000673 0.011318 0.010368
Peroxisomes 0.019607 0.033912 0.086265 0.082671 0.028282 0.019596 0.095728 0.075481 0.023972 0.025818 0.091254 0.078735
Vacuole 0.006736 0.011343 0.065505 0.090360 0.005062 0.009106 0.104372 0.086596 0.005894 0.010079 0.085997 0.088300
Vacuole Periphery 0.013550 0.013647 0.016995 0.011788 0.009139 0.013548 0.015092 0.015317 0.011331 0.013592 0.015991 0.013719

Localization Changes (T-score)

R1 R2 R1 & R2
UBP2_WT UBP14_WT UBP2UBP14_WT UBP2UBP14_UBP2 UBP2UBP14_UBP14 UBP2_WT UBP14_WT UBP2UBP14_WT UBP2UBP14_UBP2 UBP2UBP14_UBP14 UBP2_WT UBP14_WT UBP2UBP14_WT UBP2UBP14_UBP2 UBP2UBP14_UBP14
Actin -4.01 -8.61 -11.55 -10.06 1.79 0.00 -5.03 -7.44 -7.38 -2.65 -2.94 -9.54 -13.62 -12.42 0.61
Bud Neck 0.94 -4.02 -8.61 -9.31 -4.65 0.84 -8.65 -11.74 -11.85 -2.38 1.35 -8.43 -13.54 -14.44 -5.15
Bud Site -3.64 -13.22 -23.95 -22.83 -7.91 2.42 -12.96 -22.09 -22.62 -3.03 -1.08 -18.46 -32.40 -31.96 -7.56
Cell Periphery -0.85 -2.20 -2.43 -1.34 0.19 2.55 3.90 2.43 -0.42 -5.21 1.78 1.94 0.96 -1.43 -1.67
Cytoplasm -0.49 -6.69 -16.19 -16.03 -13.01 0.25 -11.84 -18.51 -18.45 -6.02 -0.14 -13.20 -24.38 -24.26 -13.23
Cytoplasmic Foci -2.73 -14.96 -18.97 -17.32 0.95 -2.33 -17.77 -22.97 -21.76 2.14 -3.45 -23.13 -29.74 -27.79 2.19
Eisosomes 0.12 -6.14 -7.82 -9.35 -1.08 -0.36 -3.66 -7.93 -6.90 -3.40 0.01 -6.93 -10.50 -11.54 -2.56
Endoplasmic Reticulum -0.89 -5.74 -8.07 -7.96 1.98 0.39 -5.98 -8.97 -9.56 4.45 -0.19 -8.16 -10.17 -10.17 4.23
Endosome -5.34 -6.63 -1.36 3.52 5.32 -4.29 -4.81 -4.94 -1.02 1.32 -6.76 -8.02 -4.64 1.63 4.52
Golgi -0.89 -5.34 8.05 8.39 9.53 -6.12 2.62 1.98 7.41 -1.02 -5.09 -2.63 6.86 11.06 6.65
Lipid Particles 0.08 0.54 -0.94 -0.97 -1.74 -3.27 -4.23 -3.69 1.21 2.31 -1.80 -2.51 -2.17 0.11 0.73
Mitochondria 5.91 53.20* 62.95* 47.60* -1.43 5.19 60.11* 56.84* 48.56* -7.09 7.69 80.19* 83.52* 67.85* -6.24
Mitotic Spindle -4.07 -10.58 -10.94 -9.90 5.65 -0.67 -12.72 -13.88 -13.64 6.62 -3.32 -16.49 -17.65 -16.83 8.62
None 1.35 1.93 -0.61 -1.41 -1.71 0.76 -2.37 -2.20 -2.40 0.12 1.53 0.45 -1.14 -2.14 -1.51
Nuclear Periphery 0.02 -4.57 -5.44 -5.52 -2.59 -3.88 -4.25 -4.18 -3.95 1.80 -0.85 -5.15 -6.55 -6.45 0.70
Nuclear Periphery Foci -1.43 -2.89 -5.81 -5.36 1.14 -1.02 -4.44 -5.83 -5.58 3.28 -1.62 -5.12 -7.98 -7.51 3.05
Nucleolus 0.22 0.17 -1.77 -2.22 -2.33 -1.28 -2.92 -2.25 0.42 2.42 -0.96 -2.70 -2.49 -0.80 1.48
Nucleus -1.40 -2.69 -8.28 -7.67 -4.02 -0.91 -5.14 -6.39 -6.24 2.46 -1.62 -5.77 -10.42 -9.89 -0.13
Peroxisomes -4.23 -7.78 -11.60 -8.01 0.60 2.91 -7.67 -9.67 -11.71 2.15 -0.87 -10.95 -15.13 -14.00 2.00
Vacuole -3.92 -8.44 -17.07 -16.10 -4.39 -4.71 -13.10 -18.87 -17.98 1.17 -5.92 -15.35 -25.42 -24.15 -1.89
Vacuole Periphery -0.06 -1.30 1.82 1.73 2.23 -4.29 -3.12 -4.11 -0.69 0.02 -2.64 -2.84 -1.70 0.63 1.68
Protein Complexes26S Proteasome complex37S mitochondrial small ribosomal subunit54S mitochondrial large ribosomal subunit60S cytosolic large ribosomal subunitAar2-U5 snRNPAnaphase-Promoting Complex variant 1Anaphase-Promoting Complex variant 2Anaphase-Promoting Complex variant 3Anaphase-Promoting Complex variant 4Arp2/3 complexATG1 kinase complexBLOC-1 complexCcr4-Not complexCentral kinetochore CTF19 complexCleavage and polyadenylation specificity factorcomplexCMG helicase complexCMG-Pol epsilon complexCOMPASS complexCOP9 signalosome COPI vesicle coat complexCoQ6 biosynthesis complexCore mediator complexCORVET complexCTF18-RFC complexCURI complex variant 1CURI complex variant 2CURI complex variant 3Cytoplasmic exosome complex, DIS3 variantDASH complexDNA-directed RNA Polymerase I complexDNA-directed RNA polymerase II complexDNA-directed RNA polymerase III complexDNA replication factor C complexEGO complexELG1-RFC complex Elongator holoenzyme complexEndoplasmic Reticulum Membrane ComplexEukaryotic translation initiation factor 2BcomplexEukaryotic translation initiation factor 3core complexExocystExomer complexFAR complexGeneral transcription factor complex TFIIDGeneral transcription factor complex TFIIHGET4-GET5 transmembrane domain recognition complexGID ubiquitin ligase complexGin4 complexGolgi transport complexGSE complexHMC complexHOPS complexINO80 chromatin remodeling complexLSM1-7 complexLsm1-7-Pat1 complexLSM2-7 complexLSM2-8 complexMCM complexMICOS complexMitochondrial electron transport complex IIIMitochondrial inner membrane pre-sequence translocasecomplexMitochondrial outer membrane translocase holocomplexMitochondrial proton-transporting ATP synthase complexMitochondrial pyruvate dehydrogenase complexNineTeen complexNOP8 60s ribosome pre-assembly complexNuA3 histone acetyltransferase complexNuA4 histone acetyltransferase complexNuclear condensin complexNuclear/nucleolar exosome complex, DIS3-RRP6 variantNuclear pore complexNucleolar ribonuclease MRP complexNucleolar ribonuclease P complexOligosaccharyl transferase complex variant 1Oligosaccharyl transferase complex variant 2PAF1 complexPAS complexPhosphatidylinositol 3-kinase complex IPolarisomePrefoldin complexPRP19-associated complexRad17 RFC-like complexRetromer complexRPD3L histone deacetylase complexRPD3S histone deacetylase complexRQC complexRSC complex variant RSC1RSC complex variant RSC2SAGA complexSCF-Met30 ubiquitin ligase complexSCF-Ufo1 ubiquitin ligase complexSEA complexSeptin complexSET3C histone deacetylase complexSignal recognition particleSLIK (SAGA-like) complexSmall ribosomal subunit processome, variant1Small ribosomal subunit processome, variant2Small ribosomal subunit processome, variant3SMC5-SMC6 SUMO ligase complexSm complexSpliceosomal commitment complexSPOTS complexSWI/SNF chromatin remodelling complexSwr1 chromatin remodelling complexTHO complexTranscription factor TFIIIC complexTranslocon complexTRAPPIII protein complexTRAPPII protein complexTRAPPI protein complexTREX complexU1 snRNPU2 snRNPU4 snRNPU4/U6 snRNPU4/U6.U5 tri-snRNP complexU5 snRNPU6 snRNP complexUTP-A complexUTP-B complexUTP-C complex variant 1UTP-C complex variant 2UTP-C complex variant 3Vacuolar proton translocating ATPase complex,Golgi variantVacuolar proton translocating ATPase complex,vacuole variantCellular Components••••••••••••••••actinbud neckcell peripherycytoplasmendosomeERGolgimitochondrionmixednuclear peripherynucleolusnucleusperoxisomespindle polevacuolar membranevacuole
Standard name
Human Ortholog
Description WD40 repeat-containing protein associated with the CCR4-NOT complex; interacts in a Ccr4p-dependent manner with Ssn2p; also interacts with Fis1p, Mdv1p and Dnm1p and plays a role in mitochondrial fission; CAF4 has a paralog, MDV1, that arose from the whole genome duplication
Localization
Cell Percentages mitochondrion (94%)
Cell Cycle Regulation No
Subcompartmental Group mito-2

Caf4

Caf4


Nearest neighbours ( genes)

correlation threshold

0.6

1.0

0.80


Biological Process (Gene Ontology)
Molecular Function (Gene Ontology)
Cellular Component (Gene Ontology)

Endocytosis
Temp Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Vph1-GFP)
37℃
RT
Cell Cycle Omics

CYCLoPs (Caf4-GFP)
Gene / Allele Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Sac6-tdTomato)
Gene Images
Gene Images
Images are not yet available
Images are not yet available