Standard name
Human Ortholog
Description Nucleolar serine-rich protein; role in preribosome assembly or transport; may function as a chaperone of small nucleolar ribonucleoprotein particles (snoRNPs); immunologically and structurally to rat Nopp140
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Micrographs

ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Neck 0 0 0 0 0.06 0 0.06 0 0.05 0 0 0.05 0 0 0 0 0 0 0 0 0 0 0 0
Bud Site 0 0 0 0 0 0 0 0 0.06 0 0 0.05 0 0 0 0 0 0 – – – – – –
Cell Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cytoplasm 0 0 0 0 0 0 0 0 0 0 0 0 0.09 0.1 0.16 0 0 0.06 0 0 0 0 0 0
Endoplasmic Reticulum 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Endosome 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Golgi 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Mitochondria 0.23 0.35 0.24 0.21 0.07 0.08 0.06 0 0.05 0 0.08 0.05 0.11 0 0 0.07 0.08 0.08 0 0 0 0 0 0
Nucleus 0.16 0.09 0 0 0 0 0 0 0 0 0 0 0.07 0 0 0 0.07 0.07 0.08 0.06 0 0.05 0 0
Nuclear Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nucleolus 0.93 0.92 0.98 0.94 0.94 0.88 0.81 0.8 0.81 0.81 0.82 0.75 0.86 0.84 0.78 0.97 0.95 0.9 0.8 0.83 0.83 0.88 0.86 0.84
Peroxisomes 0 0 0 0 0.05 0.14 0.13 0.11 0.08 0.07 0.11 0.1 0 0 0 0 0 0 0 0 0 0 0 0
SpindlePole 0 0 0 0 0.14 0.24 0.29 0.27 0.33 0.38 0.32 0.42 0 0.13 0.11 0 0 0 0.06 0 0.08 0 0 0.06
Vac/Vac Membrane 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0
Bud 1 1 0 0 1 0 0 3 3 1 1 3 1 0 2 0 0 0 4 1 1 2 1 7
Bud Neck 3 2 1 5 19 10 25 18 17 18 10 16 12 17 17 0 0 0 0 2 2 1 1 3
Bud Site 0 1 1 0 3 6 17 9 21 9 6 17 0 0 0 1 0 1 – – – – – –
Cell Periphery 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
Cytoplasm 0 0 1 6 4 9 13 9 11 9 4 3 29 40 83 2 2 5 0 0 0 1 1 0
Endoplasmic Reticulum 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0
Endosome 0 0 0 2 2 2 2 3 1 2 0 1 2 3 13 1 1 0 0 2 0 0 0 3
Golgi 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
Mitochondria 55 58 55 44 21 23 25 21 17 18 21 16 35 9 15 7 7 7 0 0 1 1 1 2
Nucleus 38 15 8 3 7 9 12 18 15 11 12 14 23 15 6 3 6 6 18 9 6 12 13 18
Nuclear Periphery 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 2
Nucleolus 223 154 221 201 298 262 366 438 290 391 222 239 288 322 400 94 83 81 192 143 197 225 318 393
Peroxisomes 2 1 5 4 15 41 59 60 30 35 30 32 4 3 13 0 0 2 1 0 1 0 1 1
SpindlePole 6 1 6 5 43 72 133 149 119 184 88 134 4 50 56 3 2 1 15 6 20 5 15 26
Vac/Vac Membrane 1 0 0 2 1 0 0 0 0 1 0 0 3 6 2 0 0 0 5 2 1 1 6 6
Unique Cell Count 240 167 226 214 318 298 452 546 359 485 272 320 333 385 515 97 87 90 239 172 237 257 369 467
Labelled Cell Count 330 234 298 272 414 434 652 729 524 679 395 475 402 465 608 111 101 105 239 172 237 257 369 467


Nucleolus

(Huh et al. Nature 2003 425:686)
Screen WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 AF100 AF140 AF180
Mean Cell GFP Intensity (1e-4) 20.3 24.4 25.1 21.2 16.6 12.6 12.1 11.7 11.2 10.4 10.1 10.3 26.3 22.3 21.2 42.3 36.2 35.7 33.2 32.3 30.6
Std Deviation (1e-4) 6.5 9.8 7.7 7.6 5.2 4.1 3.8 4.0 4.4 3.4 3.4 4.4 11.6 9.8 11.4 18.7 16.8 22.8 12.5 13.8 10.8
Intensity Change (Log2) – – – -0.24 -0.59 -0.99 -1.05 -1.09 -1.16 -1.27 -1.31 -1.29 0.07 -0.17 -0.24 0.76 0.53 0.51 0.41 0.37 0.29

WT3RAP60RAP140RAP220RAP300RAP380RAP460RAP540RAP620RAP7000204060WT3HU80HU120HU1600204060WT3rpd3Δ_1rpd3Δ_2rpd3Δ_30204060WT1AF100AF140AF1800204060
rapamycinhydroxy-urearpd3 knockoutalpha-factorMultiple Condition Time-Course Intensity PlotsGFP Intensity (1e-4)GFP Intensity (1e-4)GFP Intensity (1e-4)GFP Intensity (1e-4)

Localization RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3
Cortical Patches 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Neck 0 3.4 0 3.3 2.3 2.9 2.5 0 3.0 2.4 2.8 2.3 0 0 0
Bud Site 0 0 0 2.5 0 3.3 0 0 3.1 0 0 0 0 0 0
Cell Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cytoplasm 0 0 0 0 0 0 0 0 0 4.3 4.7 6.2 0 0 0
Endoplasmic Reticulum 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Endosome 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Golgi 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Mitochondria -0.9 -5.9 -5.3 -7.2 -8.7 -7.0 -8.4 -5.1 -6.6 -4.4 -8.6 -9.2 -3.6 -3.2 -3.3
Nucleus -1.4 -0.9 -0.3 -0.6 -0.2 0.4 -1.0 0.5 0.5 1.7 0.2 0 0 0 0
Nuclear Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nucleolus -2.0 -2.2 -4.2 -6.1 -6.3 -6.0 -6.2 -5.7 -7.3 -4.6 -5.4 -6.8 -0.5 -1.1 -3.0
Peroxisomes 0 1.5 4.6 4.6 4.0 3.1 2.7 3.8 3.6 0 0 0.3 0 0 0
SpindlePole -0.2 4.4 6.8 8.1 7.8 8.8 9.9 8.4 10.3 0 4.3 3.7 0 0 0
Vacuole 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Images

Circle plot not available

Protein Concentration and Protein Localization Data

R1 R2 R3
G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase
Concentration 28.1455 28.1251 26.5398 24.2959 24.6635 27.2515 29.4244 34.9227 30.8995 29.3676 24.4666 30.8546 24.6079 30.5685 28.2849 27.7108 29.9699 29.0579
Actin 0.0318 0.0001 0.0001 0.0012 0 0.0052 0.0091 0.0009 0.0032 0.0101 0.0088 0.0014 0.0129 0 0.0011 0 0.0001 0
Bud 0.0003 0.0001 0.0002 0.0002 0 0 0.0005 0.0002 0.0005 0.0002 0.0015 0.0002 0.0003 0.0001 0.0003 0 0 0
Bud Neck 0.0002 0.0002 0.0001 0.0033 0.0001 0.0001 0.0002 0.0001 0.0004 0.0001 0.0009 0.0003 0.0003 0 0.0003 0 0 0
Bud Periphery 0.0004 0.0001 0.0001 0.0004 0 0.0001 0.0007 0.0002 0.0013 0.0004 0.0045 0.0002 0.0003 0 0.0002 0 0 0
Bud Site 0.0009 0.0005 0.0004 0.0022 0.0001 0.0001 0.0016 0.001 0.0012 0.0004 0.0074 0.0002 0.0021 0.0002 0.0035 0 0 0
Cell Periphery 0.0002 0.0002 0.0003 0.0004 0.0002 0.0001 0.0006 0.0005 0.0009 0.0003 0.0009 0.0002 0.0003 0.0002 0.0003 0.0001 0.0002 0.0002
Cytoplasm 0.0008 0.0005 0.0002 0.0008 0 0.0155 0.0036 0.0001 0.0009 0 0.0021 0.0026 0.0042 0 0.0044 0 0 0
Cytoplasmic Foci 0.0116 0.0055 0.0087 0.0168 0.0141 0.0054 0.0155 0.0025 0.0115 0.0004 0.0301 0.0067 0.0479 0.0023 0.004 0.0003 0.0003 0.0029
Eisosomes 0.0003 0 0.0001 0.0001 0.0001 0 0.0002 0.0001 0.0001 0.0001 0.0009 0.0001 0.0005 0.0002 0 0 0.0002 0
Endoplasmic Reticulum 0.0011 0.0002 0 0.0002 0 0.0026 0.0015 0.0002 0.0011 0.0003 0.0021 0.0003 0.005 0 0.0021 0 0 0
Endosome 0.0033 0.0038 0.0001 0.0221 0 0.0033 0.0168 0.0011 0.0061 0.0028 0.0154 0.0018 0.0436 0 0.0155 0 0 0
Golgi 0.0015 0.0003 0.0001 0.0139 0 0.0018 0.0037 0.0006 0.0024 0.0042 0.0041 0.0011 0.0078 0 0.002 0 0 0
Lipid Particles 0.0052 0.0034 0.003 0.0259 0.0065 0.0036 0.014 0.0029 0.0049 0.0025 0.0325 0.0066 0.0206 0.0005 0.0031 0.0003 0.0012 0.0019
Mitochondria 0.0119 0.0006 0.0082 0.0056 0.0242 0.0016 0.0106 0.0062 0.0134 0.0053 0.0445 0.014 0.0135 0.0022 0.0024 0.0002 0.0887 0.0026
None 0.0027 0.0006 0.0014 0.0018 0.0001 0.004 0.0038 0.0002 0.0006 0.0001 0.0053 0.0003 0.0049 0.0005 0.0007 0 0 0.0001
Nuclear Periphery 0.001 0.0119 0.0001 0.0078 0 0.0013 0.0185 0.0039 0.0088 0.0008 0.0183 0.0014 0.017 0 0.0022 0 0 0
Nucleolus 0.8882 0.8707 0.9177 0.8102 0.9184 0.8988 0.8032 0.8541 0.8536 0.8997 0.7335 0.8997 0.7395 0.9197 0.9042 0.9416 0.8665 0.9453
Nucleus 0.0351 0.073 0.0437 0.052 0.0329 0.0534 0.0674 0.1174 0.07 0.0708 0.0576 0.0571 0.0454 0.0732 0.0474 0.0568 0.0413 0.0458
Peroxisomes 0.0015 0.0004 0.0007 0.0044 0.0015 0.0003 0.0037 0.0007 0.0019 0.0003 0.0056 0.0022 0.0107 0.0002 0.0004 0 0.0011 0.0002
Punctate Nuclear 0.0014 0.0011 0.0134 0.024 0.0004 0.0018 0.0172 0.001 0.007 0.0002 0.0156 0.002 0.0164 0.0001 0.0031 0.0001 0.0001 0.0002
Vacuole 0.0003 0.0125 0.0007 0.0039 0.0002 0.0004 0.0045 0.0018 0.005 0.0006 0.0037 0.0009 0.0034 0.0003 0.002 0.0002 0.0001 0.0002
Vacuole Periphery 0.0004 0.0143 0.0009 0.0026 0.0011 0.0005 0.0032 0.0044 0.0051 0.0005 0.0049 0.0008 0.0033 0.0002 0.0007 0.0001 0.0003 0.0005

Sequencing Data

R1 R2
G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Post-START S/G2 Metaphase Anaphase Telophase
Gene Expression 140.5237 163.1843 130.0816 93.9351 148.8024 93.0285 107.6146 87.104 77.8416 88.8345
Translational Efficiency 2.1399 2.0906 2.0962 1.9612 1.7044 1.8548 1.7107 1.8949 1.7798 2.0705

Hit Data

Dataset Hit
Protein Concentration ✘
Protein Localization ✘
Gene Expression ✔
Translational Efficiency ✘

Micrographs

Cell Count

R1 R2 R1 & R2
WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14
540 186 2318 602 1768 2109 153 956 2308 2295 2471 1558

Protein Abundance

R1 R2 R1 & R2
WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14
Mean 1804.26 2034.64 2891.52 3313.72 1441.28 1888.27 3044.78 3290.50 1526.21 1900.13 2901.01 3299.47
Standard Deviation 488.77 596.15 789.44 1117.31 370.26 528.00 833.23 1098.08 429.56 535.34 793.08 1105.61
Intensity Change Log 2 — 0.173366 0.680421 0.877044 — 0.389714 1.078987 1.190956 — 0.273466 0.871105 1.024930

Localization Score (DeepLoc)

R1 R2 R1 & R2
WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14
Actin 0.000218 0.000263 0.000618 0.000529 0.000300 0.000368 0.000401 0.000603 0.000281 0.000359 0.000604 0.000574
Bud Neck 0.001099 0.001714 0.002476 0.008270 0.002152 0.002177 0.004992 0.010170 0.001905 0.002140 0.002632 0.009436
Bud Site 0.000348 0.000496 0.000522 0.002878 0.000850 0.000628 0.001411 0.005332 0.000733 0.000617 0.000577 0.004384
Cell Periphery 0.000012 0.000017 0.000037 0.000080 0.000048 0.000039 0.000042 0.000173 0.000040 0.000038 0.000038 0.000137
Cytoplasm 0.000061 0.000156 0.000151 0.000441 0.000629 0.000392 0.000196 0.001002 0.000496 0.000373 0.000154 0.000785
Cytoplasmic Foci 0.010774 0.012886 0.003226 0.030047 0.015658 0.009925 0.018072 0.029454 0.014515 0.010165 0.004145 0.029683
Eisosomes 0.000293 0.000277 0.000428 0.000307 0.000399 0.000408 0.000223 0.000309 0.000374 0.000398 0.000415 0.000309
Endoplasmic Reticulum 0.000080 0.000289 0.000100 0.000131 0.000370 0.000172 0.000098 0.000273 0.000302 0.000181 0.000100 0.000218
Endosome 0.000019 0.000347 0.000060 0.001644 0.000315 0.000065 0.000026 0.002040 0.000246 0.000088 0.000058 0.001887
Golgi 0.000198 0.000539 0.000221 0.001231 0.000374 0.000231 0.000371 0.002170 0.000333 0.000256 0.000230 0.001807
Lipid Particles 0.000024 0.000178 0.000012 0.000085 0.000081 0.000199 0.000022 0.000146 0.000068 0.000197 0.000013 0.000122
Mitochondria 0.001416 0.001357 0.002491 0.004913 0.001411 0.002058 0.002008 0.005082 0.001412 0.002001 0.002461 0.005017
Mitotic Spindle 0.009803 0.012211 0.011626 0.016694 0.014414 0.009540 0.010565 0.021695 0.013335 0.009757 0.011561 0.019763
None 0.000422 0.000429 0.000392 0.000765 0.001110 0.000976 0.000456 0.000800 0.000949 0.000932 0.000396 0.000787
Nuclear Periphery 0.000131 0.000253 0.000308 0.000434 0.000132 0.000210 0.000166 0.000737 0.000132 0.000213 0.000299 0.000620
Nuclear Periphery Foci 0.000162 0.004209 0.000118 0.000305 0.001017 0.000256 0.000078 0.000447 0.000817 0.000577 0.000115 0.000392
Nucleolus 0.603184 0.601404 0.640566 0.613368 0.604511 0.645717 0.617424 0.631496 0.604201 0.642126 0.639133 0.624491
Nucleus 0.114363 0.103105 0.226862 0.133205 0.135474 0.170686 0.132335 0.164085 0.130534 0.165209 0.221009 0.152153
Peroxisomes 0.256447 0.258325 0.108021 0.177386 0.218600 0.154692 0.209322 0.114777 0.227455 0.163091 0.114293 0.138969
Vacuole 0.000403 0.000790 0.000437 0.003922 0.001472 0.000586 0.000693 0.004461 0.001222 0.000603 0.000453 0.004253
Vacuole Periphery 0.000542 0.000756 0.001329 0.003366 0.000681 0.000674 0.001098 0.004748 0.000649 0.000680 0.001315 0.004214

Localization Changes (T-score)

R1 R2 R1 & R2
UBP2_WT UBP14_WT UBP2UBP14_WT UBP2UBP14_UBP2 UBP2UBP14_UBP14 UBP2_WT UBP14_WT UBP2UBP14_WT UBP2UBP14_UBP2 UBP2UBP14_UBP14 UBP2_WT UBP14_WT UBP2UBP14_WT UBP2UBP14_UBP2 UBP2UBP14_UBP14
Actin -1.66 -22.56 -10.85 -6.76 2.45 -3.13 -2.58 -9.34 -7.40 -3.94 -4.28 -17.52 -12.42 -8.86 0.58
Bud Neck -2.27 -10.87 -6.89 -6.04 -5.67 -0.24 -2.44 -10.17 -10.13 -3.84 -1.65 -4.83 -11.96 -11.55 -10.78
Bud Site -1.72 -4.60 -5.77 -4.94 -5.35 2.14 -2.77 -4.35 -4.53 -3.71 1.08 1.68 -5.59 -5.71 -5.77
Cell Periphery -1.61 -4.28 -5.23 -4.54 -3.06 1.08 0.21 -3.87 -4.15 -3.81 0.30 0.08 -4.67 -4.81 -4.68
Cytoplasm -1.08 -2.19 -3.63 -2.28 -2.63 1.00 2.17 -1.98 -2.91 -3.97 0.57 2.53 -2.16 -2.69 -5.01
Cytoplasmic Foci -1.03 5.97 -6.54 -5.33 -9.50 3.44 -0.82 -5.46 -7.24 -2.75 3.00 9.55 -7.56 -9.27 -12.61
Eisosomes 0.31 -5.24 -0.46 -0.50 4.44 -0.41 8.91 3.92 3.88 -3.49 -1.13 -1.84 3.84 4.16 4.65
Endoplasmic Reticulum -1.73 -2.02 -1.42 1.24 -0.87 2.77 3.51 1.04 -1.19 -1.93 2.11 3.84 1.25 -0.59 -2.34
Endosome -1.13 -1.08 -1.27 -0.97 -1.24 2.13 2.52 -2.60 -3.08 -3.15 1.67 1.99 -2.50 -2.79 -2.84
Golgi -1.49 -0.49 -1.52 -0.92 -1.48 4.66 -0.14 -2.68 -2.92 -2.67 2.32 2.13 -3.01 -3.17 -3.22
Lipid Particles -1.60 2.31 -3.18 0.95 -3.89 -0.88 3.43 -2.04 0.31 -3.94 -1.05 4.36 -2.46 0.55 -5.32
Mitochondria 0.23 -4.59 -3.90 -4.02 -2.72 -1.65 -2.41 -6.30 -4.46 -4.86 -1.64 -7.22 -7.28 -5.09 -5.11
Mitotic Spindle -1.07 -0.80 -2.05 -0.42 -1.74 2.79 1.16 -2.73 -4.49 -2.96 2.10 1.14 -3.11 -4.49 -3.88
None -0.15 0.50 -5.82 -5.83 -6.95 0.36 2.89 1.22 0.40 -3.52 0.07 3.34 0.79 0.36 -7.48
Nuclear Periphery -1.83 -3.62 -4.36 -1.99 -1.76 -1.69 -1.23 -3.85 -3.22 -3.55 -1.92 -4.20 -4.92 -3.79 -3.04
Nuclear Periphery Foci -1.56 1.30 -1.32 1.51 -1.81 3.00 3.78 2.07 -1.16 -2.54 0.84 3.67 2.06 0.86 -2.81
Nucleolus 0.29 -3.87 -0.18 -0.41 3.11 -5.99 -0.30 -1.35 2.87 -0.40 -6.08 -5.51 -1.16 3.64 3.19
Nucleus 1.07 -14.97 -2.43 -2.96 9.80 -6.04 -0.11 -4.26 0.11 -1.90 -6.65 -16.13 -4.32 1.17 9.24
Peroxisomes -0.08 17.86 7.66 5.66 -9.05 11.73 0.58 17.30 7.70 6.31 12.87 24.76 16.57 5.07 -5.23
Vacuole -1.27 -0.44 -2.59 -2.24 -2.56 1.81 1.55 -2.85 -4.12 -3.98 1.63 2.08 -3.53 -4.65 -4.86
Vacuole Periphery -1.50 -5.13 -6.65 -5.86 -4.54 0.04 -1.80 -4.42 -4.48 -3.85 -0.31 -3.83 -6.10 -6.13 -4.85
Protein Complexes26S Proteasome complex37S mitochondrial small ribosomal subunit54S mitochondrial large ribosomal subunit60S cytosolic large ribosomal subunitAar2-U5 snRNPAnaphase-Promoting Complex variant 1Anaphase-Promoting Complex variant 2Anaphase-Promoting Complex variant 3Anaphase-Promoting Complex variant 4Arp2/3 complexATG1 kinase complexBLOC-1 complexCcr4-Not complexCentral kinetochore CTF19 complexCleavage and polyadenylation specificity factorcomplexCMG helicase complexCMG-Pol epsilon complexCOMPASS complexCOP9 signalosome COPI vesicle coat complexCoQ6 biosynthesis complexCore mediator complexCORVET complexCTF18-RFC complexCURI complex variant 1CURI complex variant 2CURI complex variant 3Cytoplasmic exosome complex, DIS3 variantDASH complexDNA-directed RNA Polymerase I complexDNA-directed RNA polymerase II complexDNA-directed RNA polymerase III complexDNA replication factor C complexEGO complexELG1-RFC complex Elongator holoenzyme complexEndoplasmic Reticulum Membrane ComplexEukaryotic translation initiation factor 2BcomplexEukaryotic translation initiation factor 3core complexExocystExomer complexFAR complexGeneral transcription factor complex TFIIDGeneral transcription factor complex TFIIHGET4-GET5 transmembrane domain recognition complexGID ubiquitin ligase complexGin4 complexGolgi transport complexGSE complexHMC complexHOPS complexINO80 chromatin remodeling complexLSM1-7 complexLsm1-7-Pat1 complexLSM2-7 complexLSM2-8 complexMCM complexMICOS complexMitochondrial electron transport complex IIIMitochondrial inner membrane pre-sequence translocasecomplexMitochondrial outer membrane translocase holocomplexMitochondrial proton-transporting ATP synthase complexMitochondrial pyruvate dehydrogenase complexNineTeen complexNOP8 60s ribosome pre-assembly complexNuA3 histone acetyltransferase complexNuA4 histone acetyltransferase complexNuclear condensin complexNuclear/nucleolar exosome complex, DIS3-RRP6 variantNuclear pore complexNucleolar ribonuclease MRP complexNucleolar ribonuclease P complexOligosaccharyl transferase complex variant 1Oligosaccharyl transferase complex variant 2PAF1 complexPAS complexPhosphatidylinositol 3-kinase complex IPolarisomePrefoldin complexPRP19-associated complexRad17 RFC-like complexRetromer complexRPD3L histone deacetylase complexRPD3S histone deacetylase complexRQC complexRSC complex variant RSC1RSC complex variant RSC2SAGA complexSCF-Met30 ubiquitin ligase complexSCF-Ufo1 ubiquitin ligase complexSEA complexSeptin complexSET3C histone deacetylase complexSignal recognition particleSLIK (SAGA-like) complexSmall ribosomal subunit processome, variant1Small ribosomal subunit processome, variant2Small ribosomal subunit processome, variant3SMC5-SMC6 SUMO ligase complexSm complexSpliceosomal commitment complexSPOTS complexSWI/SNF chromatin remodelling complexSwr1 chromatin remodelling complexTHO complexTranscription factor TFIIIC complexTranslocon complexTRAPPIII protein complexTRAPPII protein complexTRAPPI protein complexTREX complexU1 snRNPU2 snRNPU4 snRNPU4/U6 snRNPU4/U6.U5 tri-snRNP complexU5 snRNPU6 snRNP complexUTP-A complexUTP-B complexUTP-C complex variant 1UTP-C complex variant 2UTP-C complex variant 3Vacuolar proton translocating ATPase complex,Golgi variantVacuolar proton translocating ATPase complex,vacuole variantCellular Components••••••••••••••••actinbud neckcell peripherycytoplasmendosomeERGolgimitochondrionmixednuclear peripherynucleolusnucleusperoxisomespindle polevacuolar membranevacuole
Standard name
Human Ortholog
Description Nucleolar serine-rich protein; role in preribosome assembly or transport; may function as a chaperone of small nucleolar ribonucleoprotein particles (snoRNPs); immunologically and structurally to rat Nopp140
Localization
Cell Percentages nucleolus (92%)
Cell Cycle Regulation No
Subcompartmental Group nucleolus-2

Srp40

Srp40


Nearest neighbours ( genes)

correlation threshold

0.6

1.0

0.80


Biological Process (Gene Ontology)
Molecular Function (Gene Ontology)
Cellular Component (Gene Ontology)

Endocytosis
Temp Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Vph1-GFP)
37℃
RT
Cell Cycle Omics

CYCLoPs (Srp40-GFP)
Gene / Allele Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Sac6-tdTomato)
Gene Images
Gene Images
Images are not yet available
Images are not yet available