Standard name
Human Ortholog
Description Member of conserved ER transmembrane complex; required for efficient folding of proteins in the ER; null mutant displays induction of the unfolded protein response; homologous to worm F33D4.7/EMC-6, fly CG11781, human TMEM93

Micrographs

ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.11 0 0.06 0 0.05 0 0 0 0
Bud 0 0 0 0 0 0 0 0.05 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Neck 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Site 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cell Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0 0.07 0.07 0.14 0.16 0 0 0 0 0 0
Cytoplasm 0.66 0.57 0.84 0.6 0.6 0.46 0.4 0.39 0.36 0.38 0.37 0.57 0.73 0.8 0.72 0.7 0.71 0.23 0.14 0.35 0.21 0.18 0.18
Endoplasmic Reticulum 0.23 0.14 0 0.11 0.05 0.09 0 0.05 0.05 0.08 0.1 0.41 0.3 0.18 0.06 0.07 0 0.49 0.46 0.27 0.5 0.57 0.51
Endosome 0 0 0 0 0.07 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Golgi 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Mitochondria 0.05 0.17 0.2 0.43 0.24 0.49 0.57 0.62 0.61 0.62 0.59 0 0 0 0.05 0.06 0.05 0.13 0.18 0.21 0.17 0.12 0.1
Nucleus 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nuclear Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nucleolus 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Peroxisomes 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
SpindlePole 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Vac/Vac Membrane 0.1 0.16 0 0 0.13 0.13 0.13 0.12 0.11 0.06 0.08 0.05 0 0 0.11 0.07 0.09 0.06 0.08 0.07 0.05 0.06 0.11
ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 4 2 1 1 0 0 0 1 3 0 0 1 2 0 9 5 7 8 6 3 1 2 5
Bud 7 0 3 6 4 8 13 18 7 5 13 0 1 0 0 1 1 5 2 1 1 2 3
Bud Neck 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 11 1 1 0 0 2
Bud Site 0 0 0 0 0 0 1 0 3 1 1 0 0 0 0 0 0
Cell Periphery 0 2 1 8 5 12 5 6 7 9 4 1 6 17 6 16 19 6 1 2 0 0 2
Cytoplasm 316 39 122 128 144 165 231 150 137 95 136 84 125 184 61 79 83 146 16 58 26 38 52
Endoplasmic Reticulum 111 10 2 23 11 32 23 18 18 20 38 60 51 41 5 8 4 311 56 44 61 119 150
Endosome 7 0 0 2 18 6 6 3 7 0 6 2 1 4 1 1 1 6 2 1 1 2 7
Golgi 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 1 0 0 1 3
Mitochondria 25 12 29 93 58 176 329 236 232 155 213 1 0 0 4 7 6 84 21 35 21 24 28
Nucleus 1 0 0 1 2 4 5 2 5 0 3 1 0 0 1 1 2 0 0 0 0 0 1
Nuclear Periphery 0 1 0 0 0 1 2 6 1 3 3 0 0 0 0 0 0 1 0 0 0 0 1
Nucleolus 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0
Peroxisomes 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
SpindlePole 0 0 2 1 2 0 2 0 2 0 1 0 0 0 0 1 1 2 0 1 0 0 1
Vac/Vac Membrane 49 11 2 5 32 47 72 44 42 16 30 7 4 9 9 8 11 39 9 11 6 12 33
Unique Cell Count 482 69 146 214 240 361 574 381 381 252 363 147 172 231 85 113 117 634 121 168 124 209 298
Labelled Cell Count 520 77 163 268 279 451 689 484 464 304 450 157 190 255 97 128 135 634 121 168 124 209 298


Endoplasmic Reticulum

(Huh et al. Nature 2003 425:686)
Screen WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 AF100 AF140 AF180
Mean Cell GFP Intensity (1e-4) 4.9 5.4 3.7 4.2 5.3 4.5 4.3 4.1 4.1 4.1 4.1 5.9 6.3 5.9 7.6 7.6 7.8 5.4 6.4 6.5
Std Deviation (1e-4) 0.8 1.3 0.9 1.4 1.9 1.5 0.8 1.3 1.0 1.3 0.9 0.9 1.2 0.8 1.6 1.4 1.8 0.9 1.5 1.4
Intensity Change (Log2) 0.18 0.52 0.27 0.23 0.14 0.15 0.13 0.15 0.67 0.77 0.67 1.03 1.03 1.07 0.55 0.78 0.8

WT3RAP60RAP140RAP220RAP380RAP460RAP540RAP620RAP70002468WT3HU80HU120HU16002468WT3rpd3Δ_1rpd3Δ_2rpd3Δ_302468WT1AF100AF140AF18002468
rapamycinhydroxy-urearpd3 knockoutalpha-factorMultiple Condition Time-Course Intensity PlotsGFP Intensity (1e-4)GFP Intensity (1e-4)GFP Intensity (1e-4)GFP Intensity (1e-4)

Localization RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3
Cortical Patches 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Neck 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Site 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cell Periphery 0 0 0 0 0 0 0 0 0 0 3.0 0 4.3 4.7
Cytoplasm -4.8 -4.9 -7.8 -9.3 -9.1 -9.8 -8.9 -9.4 -4.9 -2.3 -0.9 -2.1 -2.6 -2.5
Endoplasmic Reticulum 0 0 0 0 0 0 0 0 8.3 6.7 4.9 0 0 0
Endosome 0 3.4 0 0 0 0 0 0 0 0 0 0 0 0
Golgi 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Mitochondria 0 1.0 0 0 0 0 0 0 -5.4 -6.1 -7.1 -3.2 -3.2 -3.5
Nucleus 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nuclear Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nucleolus 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Peroxisomes 0 0 0 0 0 0 0 0 0 0 0 0 0 0
SpindlePole 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Vacuole 0 4.0 4.0 4.0 3.7 3.6 2.3 2.9 0 0 0 0 0 3.0

Images

Circle plot not available

Protein Concentration and Protein Localization Data

R1 R2 R3
G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase
Concentration
Actin
Bud
Bud Neck
Bud Periphery
Bud Site
Cell Periphery
Cytoplasm
Cytoplasmic Foci
Eisosomes
Endoplasmic Reticulum
Endosome
Golgi
Lipid Particles
Mitochondria
None
Nuclear Periphery
Nucleolus
Nucleus
Peroxisomes
Punctate Nuclear
Vacuole
Vacuole Periphery

Sequencing Data

R1 R2
G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Post-START S/G2 Metaphase Anaphase Telophase
Gene Expression 91.1068 42.2302 96.2482 70.6347 34.9997 84.3114 90.7351 78.2226 54.263 85.0337
Translational Efficiency 1.0629 2.3213 0.8415 0.8366 2.368 1.6489 1.3161 1.0527 1.8153 1.59

Hit Data

Dataset Hit
Protein Concentration
Protein Localization
Gene Expression
Translational Efficiency

Micrographs

Cell Count

R1 R2 R1 & R2
WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14
1939 1350 276 134 1550 936 2101 1652 3489 2286 2377 1786

Protein Abundance

R1 R2 R1 & R2
WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14
Mean 705.16 799.11 985.51 956.45 766.11 805.18 906.34 994.47 732.24 801.60 915.53 991.62
Standard Deviation 80.75 105.12 110.62 112.15 96.00 103.92 138.19 168.38 92.93 104.67 137.64 165.13
Intensity Change Log 2 0.180443 0.482920 0.439739 0.071760 0.242501 0.376376 0.124873 0.362736 0.407093

Localization Score (DeepLoc)

R1 R2 R1 & R2
WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14
Actin 0.000200 0.000701 0.000574 0.000490 0.000244 0.000275 0.003747 0.003144 0.000220 0.000526 0.003379 0.002945
Bud Neck 0.007691 0.017857 0.004993 0.001992 0.004709 0.013848 0.002693 0.005996 0.006367 0.016215 0.002960 0.005696
Bud Site 0.001387 0.011922 0.006610 0.002093 0.002775 0.004425 0.009293 0.013025 0.002003 0.008852 0.008981 0.012205
Cell Periphery 0.000559 0.000785 0.000649 0.000684 0.000710 0.000617 0.001083 0.001527 0.000626 0.000716 0.001032 0.001464
Cytoplasm 0.337763 0.250176 0.193142 0.200963 0.371455 0.312070 0.165283 0.190775 0.352730 0.275518 0.168518 0.191540
Cytoplasmic Foci 0.178865 0.182918 0.056608 0.084072 0.149565 0.172528 0.025743 0.039320 0.165848 0.178664 0.029327 0.042677
Eisosomes 0.000900 0.000654 0.000191 0.000253 0.000949 0.000710 0.000536 0.000615 0.000922 0.000677 0.000496 0.000588
Endoplasmic Reticulum 0.105141 0.180232 0.264433 0.181418 0.144751 0.099283 0.655352 0.470906 0.122738 0.147087 0.609961 0.449186
Endosome 0.018118 0.036399 0.019751 0.019983 0.013791 0.026702 0.010151 0.018767 0.016196 0.032428 0.011265 0.018858
Golgi 0.016851 0.023939 0.000613 0.000721 0.012264 0.008548 0.008344 0.007881 0.014813 0.017637 0.007446 0.007344
Lipid Particles 0.146914 0.111686 0.035334 0.046408 0.132850 0.136853 0.029358 0.045009 0.140666 0.121991 0.030052 0.045114
Mitochondria 0.009724 0.022004 0.000540 0.000338 0.005929 0.008434 0.003514 0.003043 0.008038 0.016448 0.003168 0.002840
Mitotic Spindle 0.000175 0.001145 0.000527 0.000441 0.000895 0.000644 0.001286 0.005757 0.000495 0.000940 0.001198 0.005358
None 0.005225 0.004210 0.000457 0.000849 0.002341 0.002353 0.003411 0.001125 0.003944 0.003449 0.003068 0.001105
Nuclear Periphery 0.005903 0.005337 0.045296 0.035809 0.007973 0.017421 0.005080 0.011431 0.006822 0.010285 0.009750 0.013260
Nuclear Periphery Foci 0.003990 0.006583 0.134365 0.097554 0.006514 0.005323 0.021478 0.040260 0.005111 0.006067 0.034585 0.044559
Nucleolus 0.001222 0.002198 0.001219 0.001626 0.000533 0.001903 0.000353 0.000362 0.000916 0.002077 0.000454 0.000457
Nucleus 0.111093 0.054981 0.132985 0.170404 0.094058 0.099687 0.031915 0.070471 0.103525 0.073286 0.043650 0.077969
Peroxisomes 0.004851 0.008417 0.001335 0.001502 0.003811 0.006877 0.001876 0.001993 0.004389 0.007786 0.001813 0.001956
Vacuole 0.041383 0.070873 0.099953 0.151934 0.042563 0.078030 0.018759 0.066968 0.041907 0.073804 0.028187 0.073342
Vacuole Periphery 0.002047 0.006982 0.000428 0.000466 0.001319 0.003469 0.000745 0.001625 0.001724 0.005544 0.000708 0.001538

Localization Changes (T-score)

R1 R2 R1 & R2
UBP2_WT UBP14_WT UBP2UBP14_WT UBP2UBP14_UBP2 UBP2UBP14_UBP14 UBP2_WT UBP14_WT UBP2UBP14_WT UBP2UBP14_UBP2 UBP2UBP14_UBP14 UBP2_WT UBP14_WT UBP2UBP14_WT UBP2UBP14_UBP2 UBP2UBP14_UBP14
Actin -5.05 -4.65 -2.09 0.95 0.48 -0.22 -5.77 -4.71 -4.61 0.71 -3.79 -5.91 -4.81 -4.25 0.56
Bud Neck -6.29 1.67 6.84 9.96 2.07 -4.58 2.90 -1.83 3.77 -4.66 -7.85 5.79 0.61 7.81 -4.12
Bud Site -8.82 -2.42 -1.94 7.20 1.85 -1.22 -4.99 -5.98 -4.83 -2.10 -7.60 -6.94 -7.06 -2.23 -1.99
Cell Periphery -1.98 -1.05 -1.78 0.66 -0.37 0.95 -3.45 -5.06 -5.59 -2.56 -1.13 -4.80 -5.95 -4.94 -2.72
Cytoplasm 11.45 10.69 7.49 2.65 -0.23 6.17 27.55 22.03 12.59 -3.86 12.78 32.20 24.55 11.50 -3.64
Cytoplasmic Foci -0.75 19.63 10.04 10.05 -2.95 -3.51 29.89 25.32 23.03 -6.00 -2.95 44.20 36.76 33.34 -6.00
Eisosomes 2.33 6.79 6.28 9.04 -1.81 1.31 2.96 2.20 0.54 -0.64 2.51 4.24 2.86 0.80 -0.82
Endoplasmic Reticulum -8.97 -8.53 -3.03 0.33 2.95 5.30 -53.91 -27.72 -31.07 16.13 -3.89 -59.75 -31.72 -27.48 14.51
Endosome -8.82 -0.87 -1.37 6.34 -0.37 -6.34 4.11 -3.90 3.41 -6.68 -10.98 6.08 -2.39 7.61 -6.35
Golgi -4.57 21.42 21.02 17.15 -0.68 3.12 3.90 3.39 0.61 0.54 -2.68 9.53 6.63 7.74 0.26
Lipid Particles 6.37 22.48 18.68 11.97 -2.25 -0.57 23.99 19.19 15.97 -6.18 4.42 35.44 27.83 20.29 -6.42
Mitochondria -6.71 13.38 13.76 12.78 2.22 -1.60 2.10 2.38 4.16 0.69 -6.63 6.75 6.20 10.82 0.54
Mitotic Spindle -3.38 -2.22 -0.99 0.33 -0.46 0.51 -0.59 -3.98 -4.32 -3.55 -1.71 -1.41 -4.49 -4.08 -3.62
None 0.97 6.81 6.21 4.13 -1.19 -0.03 -1.50 2.36 2.66 4.34 0.73 1.45 6.11 4.47 4.21
Nuclear Periphery 0.66 -7.51 -4.11 -4.19 1.15 -5.06 3.66 -2.81 2.97 -5.51 -3.75 -3.16 -5.34 -2.04 -2.61
Nuclear Periphery Foci -4.35 -13.25 -8.32 -8.08 2.36 1.59 -11.68 -14.76 -15.15 -7.55 -2.08 -17.02 -17.31 -16.75 -3.84
Nucleolus -2.31 0.02 -0.94 1.06 -0.51 -4.43 1.35 0.63 4.39 -0.47 -4.10 3.09 2.75 5.08 -0.41
Nucleus 15.62 -2.56 -3.39 -6.60 -1.60 -1.27 19.28 5.23 5.51 -11.06 10.30 20.72 6.25 -1.56 -9.05
Peroxisomes -6.48 6.92 8.52 12.59 -0.51 -3.84 6.67 5.61 6.15 -0.55 -7.40 10.52 8.75 12.49 -0.72
Vacuole -8.58 -8.24 -9.06 -6.68 -3.50 -8.26 10.89 -8.10 1.05 -15.53 -11.88 6.50 -10.93 -1.35 -14.12
Vacuole Periphery -8.47 12.64 12.56 11.40 -0.67 -6.61 3.95 -0.56 3.36 -1.77 -10.31 8.73 0.50 7.17 -1.81
Protein Complexes26S Proteasome complex37S mitochondrial small ribosomal subunit54S mitochondrial large ribosomal subunit60S cytosolic large ribosomal subunitAar2-U5 snRNPAnaphase-Promoting Complex variant 1Anaphase-Promoting Complex variant 2Anaphase-Promoting Complex variant 3Anaphase-Promoting Complex variant 4Arp2/3 complexATG1 kinase complexBLOC-1 complexCcr4-Not complexCentral kinetochore CTF19 complexCleavage and polyadenylation specificity factorcomplexCMG helicase complexCMG-Pol epsilon complexCOMPASS complexCOP9 signalosome COPI vesicle coat complexCoQ6 biosynthesis complexCore mediator complexCORVET complexCTF18-RFC complexCURI complex variant 1CURI complex variant 2CURI complex variant 3Cytoplasmic exosome complex, DIS3 variantDASH complexDNA-directed RNA Polymerase I complexDNA-directed RNA polymerase II complexDNA-directed RNA polymerase III complexDNA replication factor C complexEGO complexELG1-RFC complex Elongator holoenzyme complexEndoplasmic Reticulum Membrane ComplexEukaryotic translation initiation factor 2BcomplexEukaryotic translation initiation factor 3core complexExocystExomer complexFAR complexGeneral transcription factor complex TFIIDGeneral transcription factor complex TFIIHGET4-GET5 transmembrane domain recognition complexGID ubiquitin ligase complexGin4 complexGolgi transport complexGSE complexHMC complexHOPS complexINO80 chromatin remodeling complexLSM1-7 complexLsm1-7-Pat1 complexLSM2-7 complexLSM2-8 complexMCM complexMICOS complexMitochondrial electron transport complex IIIMitochondrial inner membrane pre-sequence translocasecomplexMitochondrial outer membrane translocase holocomplexMitochondrial proton-transporting ATP synthase complexMitochondrial pyruvate dehydrogenase complexNineTeen complexNOP8 60s ribosome pre-assembly complexNuA3 histone acetyltransferase complexNuA4 histone acetyltransferase complexNuclear condensin complexNuclear/nucleolar exosome complex, DIS3-RRP6 variantNuclear pore complexNucleolar ribonuclease MRP complexNucleolar ribonuclease P complexOligosaccharyl transferase complex variant 1Oligosaccharyl transferase complex variant 2PAF1 complexPAS complexPhosphatidylinositol 3-kinase complex IPolarisomePrefoldin complexPRP19-associated complexRad17 RFC-like complexRetromer complexRPD3L histone deacetylase complexRPD3S histone deacetylase complexRQC complexRSC complex variant RSC1RSC complex variant RSC2SAGA complexSCF-Met30 ubiquitin ligase complexSCF-Ufo1 ubiquitin ligase complexSEA complexSeptin complexSET3C histone deacetylase complexSignal recognition particleSLIK (SAGA-like) complexSmall ribosomal subunit processome, variant1Small ribosomal subunit processome, variant2Small ribosomal subunit processome, variant3SMC5-SMC6 SUMO ligase complexSm complexSpliceosomal commitment complexSPOTS complexSWI/SNF chromatin remodelling complexSwr1 chromatin remodelling complexTHO complexTranscription factor TFIIIC complexTranslocon complexTRAPPIII protein complexTRAPPII protein complexTRAPPI protein complexTREX complexU1 snRNPU2 snRNPU4 snRNPU4/U6 snRNPU4/U6.U5 tri-snRNP complexU5 snRNPU6 snRNP complexUTP-A complexUTP-B complexUTP-C complex variant 1UTP-C complex variant 2UTP-C complex variant 3Vacuolar proton translocating ATPase complex,Golgi variantVacuolar proton translocating ATPase complex,vacuole variantCellular Componentsactinbud neckcell peripherycytoplasmendosomeERGolgimitochondrionmixednuclear peripherynucleolusnucleusperoxisomespindle polevacuolar membranevacuole
Standard name
Human Ortholog
Description Member of conserved ER transmembrane complex; required for efficient folding of proteins in the ER; null mutant displays induction of the unfolded protein response; homologous to worm F33D4.7/EMC-6, fly CG11781, human TMEM93
Localization
Cell Percentages ER (70%)
Cell Cycle Regulation No
Subcompartmental Group ER-3

Emc6

Emc6


Nearest neighbours ( genes)

correlation threshold

0.6

1.0

0.80


Biological Process (Gene Ontology)

Molecular Function (Gene Ontology)

Cellular Component (Gene Ontology)


Endocytosis
Temp Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Vph1-GFP)
37℃
RT
Cell Cycle Omics

CYCLoPs (Emc6-GFP)
Gene / Allele Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Sac6-tdTomato)
Gene Images
Gene Images
Images are not yet available
Images are not yet available