Standard name | |
---|---|
Human Ortholog | |
Description | Subunit of the Isw1b complex; exhibits nucleosome-stimulated ATPase activity and acts within coding regions to coordinate transcription elongation with termination and processing; contains a PHD finger motif; other complex members are Isw1p and Ioc4p |
ensLOC | DeepLoc | |||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Localization | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | WT1 | WT2 | WT3 | AF100 | AF140 | AF180 |
Cortical Patches | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 1 |
Bud | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 0 | 2 | 1 | 1 | 0 | 0 | 0 | 1 | 0 | 1 | 1 | 2 | 0 | 0 | 2 | 1 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 0 | 1 | 0 | 2 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 3 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 1 | 5 | 4 | 7 | 12 | 9 | 5 | 0 | 0 | 1 | 0 | 0 | 0 | – | – | – | – | – | – |
Cell Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 6 | 7 | 1 | 2 | 3 | 15 | 22 | 24 | 12 | 14 | 12 | 5 | 2 | 24 | 32 | 10 | 19 | 4 | 1 | 1 | 0 | 0 | 0 | 1 |
Endoplasmic Reticulum | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 5 | 3 | 0 | 0 | 0 | 0 | 0 | 3 | 1 |
Endosome | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 6 | 1 | 3 | 0 | 2 | 1 | 3 | 1 | 4 |
Golgi | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 2 | 0 | 0 | 0 | 3 | 0 | 1 |
Mitochondria | 6 | 23 | 8 | 2 | 2 | 21 | 16 | 33 | 56 | 74 | 64 | 24 | 5 | 0 | 1 | 8 | 3 | 3 | 0 | 1 | 1 | 1 | 2 | 3 |
Nucleus | 98 | 269 | 66 | 16 | 66 | 81 | 143 | 152 | 137 | 175 | 134 | 152 | 129 | 252 | 190 | 114 | 92 | 62 | 92 | 277 | 75 | 117 | 171 | 148 |
Nuclear Periphery | 0 | 1 | 0 | 0 | 0 | 0 | 4 | 1 | 1 | 4 | 2 | 1 | 2 | 1 | 2 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleolus | 51 | 51 | 26 | 3 | 9 | 19 | 36 | 23 | 55 | 77 | 42 | 59 | 58 | 99 | 73 | 19 | 20 | 13 | 17 | 28 | 16 | 59 | 68 | 83 |
Peroxisomes | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 0 | 0 | 1 | 0 | 0 | 3 | 3 | 2 | 0 | 2 | 0 | 3 | 0 | 0 | 1 | 0 | 1 | 1 | 1 | 2 | 0 | 1 | 3 | 2 |
Vac/Vac Membrane | 0 | 5 | 0 | 0 | 0 | 0 | 1 | 1 | 1 | 0 | 0 | 1 | 0 | 1 | 0 | 8 | 1 | 3 | 0 | 12 | 3 | 5 | 15 | 17 |
Unique Cell Count | 117 | 308 | 78 | 17 | 69 | 107 | 186 | 203 | 195 | 248 | 181 | 188 | 151 | 310 | 254 | 150 | 126 | 88 | 117 | 330 | 102 | 202 | 279 | 275 |
Labelled Cell Count | 161 | 358 | 102 | 23 | 80 | 141 | 230 | 245 | 269 | 362 | 264 | 253 | 196 | 377 | 302 | 173 | 142 | 93 | 117 | 330 | 102 | 202 | 279 | 275 |
Screen | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | AF100 | AF140 | AF180 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Mean Cell GFP Intensity (1e-4) | 6.9 | 7.3 | 5.5 | 5.7 | 6.7 | 5.2 | 5.9 | 5.9 | 5.1 | 4.7 | 4.6 | 5.2 | 7.4 | 7.8 | 7.3 | 9.2 | 9.8 | 10.1 | 7.1 | 6.9 | 7.5 |
Std Deviation (1e-4) | 1.3 | 1.9 | 0.8 | 1.0 | 1.1 | 1.4 | 1.6 | 1.6 | 1.5 | 1.3 | 1.3 | 1.0 | 1.6 | 1.9 | 1.9 | 2.5 | 2.3 | 2.8 | 1.5 | 1.5 | 1.9 |
Intensity Change (Log2) | – | – | – | 0.05 | 0.29 | -0.09 | 0.1 | 0.1 | -0.11 | -0.22 | -0.24 | -0.08 | 0.43 | 0.5 | 0.41 | 0.74 | 0.83 | 0.88 | 0.38 | 0.33 | 0.44 |
Localization | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Cortical Patches | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cell Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 0 | 0 | 3.0 | 2.8 | 2.8 | 0 | 0 | 0 | 0 | 0 | 2.1 | 2.9 | 0 | 3.2 | 0 |
Endoplasmic Reticulum | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Endosome | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Golgi | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Mitochondria | 0 | 0 | 1.7 | -0.4 | 1.3 | 3.3 | 0 | 0 | 0.6 | 0 | 0 | 0 | -1.4 | 0 | -1.8 |
Nucleus | 1.0 | 2.2 | -1.5 | -1.4 | -1.8 | -2.5 | -2.5 | -1.9 | -0.7 | 0.2 | -0.7 | -1.8 | -1.5 | -1.9 | -2.2 |
Nuclear Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleolus | -1.3 | -2.9 | -2.4 | -2.4 | -4.4 | -0.8 | 0 | 0 | -0.3 | 0.8 | -0.2 | -0.8 | -3.7 | -2.9 | -2.8 |
Peroxisomes | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Vacuole | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
R1 | R2 | R3 | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Concentration | 6.759 | 6.3299 | 6.3243 | 6.2432 | 5.8604 | 6.1897 | 5.4493 | 4.0912 | 4.1906 | 4.1847 | 3.8229 | 4.0576 | 4.92 | 4.1436 | 3.7797 | 3.9665 | 3.5783 | 3.6227 |
Actin | 0.024 | 0 | 0.0101 | 0.0002 | 0.0008 | 0.0054 | 0.0329 | 0.0002 | 0.006 | 0.0039 | 0.0019 | 0.0022 | 0.011 | 0 | 0.0169 | 0 | 0.0002 | 0.0028 |
Bud | 0.0003 | 0 | 0.0002 | 0 | 0.0001 | 0.0002 | 0.0014 | 0.0008 | 0.0026 | 0.0001 | 0.0003 | 0.0003 | 0.0006 | 0 | 0.0004 | 0 | 0.0001 | 0.0002 |
Bud Neck | 0.0014 | 0 | 0.0003 | 0.0001 | 0.0016 | 0.0005 | 0.0007 | 0.0001 | 0.0003 | 0 | 0.0007 | 0.0008 | 0.0009 | 0 | 0.0005 | 0 | 0.0002 | 0.0006 |
Bud Periphery | 0.0006 | 0 | 0.0005 | 0.0001 | 0.0002 | 0.0004 | 0.0025 | 0.0007 | 0.0034 | 0.0002 | 0.0005 | 0.0008 | 0.0022 | 0 | 0.0008 | 0 | 0.0001 | 0.0009 |
Bud Site | 0.0021 | 0 | 0.001 | 0.0001 | 0.0002 | 0.0005 | 0.0058 | 0.002 | 0.0106 | 0.0002 | 0.0008 | 0.0009 | 0.0019 | 0 | 0.0013 | 0 | 0.0004 | 0.0003 |
Cell Periphery | 0.0004 | 0 | 0.0002 | 0 | 0.0001 | 0 | 0.0005 | 0.0003 | 0.0003 | 0 | 0.0002 | 0.0001 | 0.0007 | 0 | 0.0002 | 0 | 0 | 0.0002 |
Cytoplasm | 0.0027 | 0 | 0.0009 | 0.0001 | 0.0005 | 0.0001 | 0.0057 | 0.002 | 0.0013 | 0.0004 | 0.0019 | 0.0015 | 0.0021 | 0 | 0.0012 | 0 | 0.0011 | 0.0001 |
Cytoplasmic Foci | 0.0093 | 0 | 0.003 | 0.0055 | 0.0233 | 0.0002 | 0.0127 | 0.0003 | 0.0018 | 0.0014 | 0.0068 | 0.0012 | 0.0293 | 0 | 0.0104 | 0 | 0.0246 | 0.0002 |
Eisosomes | 0.0004 | 0 | 0.0001 | 0 | 0 | 0.0001 | 0.0003 | 0 | 0.0001 | 0 | 0.0001 | 0 | 0.0001 | 0 | 0.0001 | 0 | 0 | 0 |
Endoplasmic Reticulum | 0.0019 | 0 | 0.0013 | 0 | 0.0002 | 0.0004 | 0.0018 | 0.0003 | 0.0006 | 0.0008 | 0.0014 | 0.0009 | 0.0011 | 0 | 0.0013 | 0 | 0.0001 | 0.0008 |
Endosome | 0.0098 | 0 | 0.0038 | 0.0006 | 0.0034 | 0.0012 | 0.0245 | 0.0002 | 0.0095 | 0.0098 | 0.0158 | 0.0039 | 0.0143 | 0 | 0.0133 | 0 | 0.0258 | 0.0016 |
Golgi | 0.0022 | 0 | 0.0018 | 0.0007 | 0.0009 | 0.0006 | 0.0047 | 0 | 0.0018 | 0.0023 | 0.0092 | 0.0013 | 0.0093 | 0 | 0.007 | 0 | 0.0091 | 0.001 |
Lipid Particles | 0.0101 | 0 | 0.0045 | 0.0135 | 0.0111 | 0.0003 | 0.0059 | 0.0001 | 0.0037 | 0.0037 | 0.0549 | 0.0008 | 0.012 | 0 | 0.0175 | 0 | 0.001 | 0.0012 |
Mitochondria | 0.0071 | 0 | 0.0048 | 0.0005 | 0.0008 | 0.0006 | 0.0086 | 0.0011 | 0.0122 | 0.0096 | 0.0518 | 0.0026 | 0.0094 | 0.0001 | 0.0241 | 0.0001 | 0.001 | 0.0037 |
None | 0.003 | 0 | 0.0007 | 0.0002 | 0.0011 | 0.0002 | 0.0056 | 0.0004 | 0.0004 | 0.0005 | 0.0005 | 0.0002 | 0.0023 | 0 | 0.0017 | 0 | 0.0001 | 0.0002 |
Nuclear Periphery | 0.004 | 0.0001 | 0.0041 | 0.0014 | 0.0047 | 0.0018 | 0.0142 | 0.0006 | 0.0035 | 0.0153 | 0.0048 | 0.0037 | 0.0086 | 0.0003 | 0.0043 | 0.0001 | 0.0006 | 0.0022 |
Nucleolus | 0.0539 | 0.0302 | 0.0278 | 0.0415 | 0.2961 | 0.1043 | 0.0394 | 0.0286 | 0.0135 | 0.0111 | 0.1653 | 0.1258 | 0.0523 | 0.0349 | 0.0252 | 0.0153 | 0.1169 | 0.0948 |
Nucleus | 0.8487 | 0.9694 | 0.9268 | 0.8882 | 0.6422 | 0.8822 | 0.7858 | 0.9598 | 0.9077 | 0.9354 | 0.6719 | 0.8503 | 0.8206 | 0.9645 | 0.8512 | 0.9845 | 0.8145 | 0.8872 |
Peroxisomes | 0.0058 | 0 | 0.0015 | 0.0456 | 0.0055 | 0.0002 | 0.0134 | 0.0001 | 0.0029 | 0.0012 | 0.0038 | 0.0002 | 0.0062 | 0 | 0.0132 | 0 | 0.0028 | 0.0001 |
Punctate Nuclear | 0.0075 | 0.0002 | 0.0039 | 0.0014 | 0.007 | 0.0006 | 0.0251 | 0.0004 | 0.0115 | 0.0021 | 0.0036 | 0.0008 | 0.0088 | 0.0001 | 0.0044 | 0 | 0.0009 | 0.0006 |
Vacuole | 0.0031 | 0 | 0.0018 | 0.0002 | 0.0003 | 0.0001 | 0.0051 | 0.0014 | 0.0037 | 0.0004 | 0.002 | 0.0009 | 0.005 | 0 | 0.0024 | 0 | 0.0002 | 0.0007 |
Vacuole Periphery | 0.0015 | 0 | 0.001 | 0.0002 | 0.0002 | 0.0001 | 0.0033 | 0.0005 | 0.0025 | 0.0015 | 0.002 | 0.0007 | 0.0015 | 0 | 0.0026 | 0 | 0.0002 | 0.0007 |
R1 | R2 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Gene Expression | 15.3816 | 19.4121 | 23.4075 | 21.8056 | 19.0631 | 23.0596 | 24.4322 | 22.4927 | 23.4821 | 23.5468 |
Translational Efficiency | 1.3128 | 0.8491 | 0.6981 | 0.7645 | 0.84 | 0.7162 | 0.7864 | 0.7212 | 0.6773 | 0.8073 |
Dataset | Hit |
---|---|
Protein Concentration | ✘ |
Protein Localization | ✘ |
Gene Expression | ✘ |
Translational Efficiency | ✘ |
Temp | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Vph1-GFP) |
---|---|---|---|---|
37℃ | ||||
RT |
Gene / Allele | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Sac6-tdTomato) |
---|
Gene | Images |
---|
Gene | Images |
---|