Standard name | |
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Human Ortholog | |
Description | Protein required for optimal translation under nutrient stress; perturbs association of Yef3p with ribosomes; involved in TOR signaling; binds G4 quadruplex and purine motif triplex nucleic acid; helps maintain telomere structure; protein abundance increases in response to DNA replication stress; serves as a ribosome preservation factor both during quiescence and recovery |
ensLOC | DeepLoc | |||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Localization | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | WT1 | WT2 | WT3 | AF100 | AF140 | AF180 |
Cortical Patches | 0 | 0 | 0 | 0 | 0 | 1 | 9 | 11 | 14 | 11 | 6 | 8 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud | 1 | 0 | 0 | 0 | 2 | 1 | 0 | 0 | 0 | 3 | 1 | 1 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 2 | 3 | 1 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | – | – | – | – | – |
Cell Periphery | 0 | 0 | 2 | 1 | 3 | 8 | 10 | 12 | 8 | 19 | 3 | 6 | 2 | 2 | 3 | 1 | 2 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
Cytoplasm | 109 | 167 | 239 | 155 | 160 | 212 | 208 | 161 | 210 | 152 | 63 | 70 | 192 | 281 | 269 | 184 | 146 | 120 | 107 | 152 | 198 | 140 | 194 | 261 |
Endoplasmic Reticulum | 0 | 2 | 3 | 4 | 9 | 26 | 43 | 46 | 31 | 48 | 17 | 11 | 3 | 1 | 3 | 11 | 11 | 10 | 1 | 1 | 9 | 5 | 6 | 12 |
Endosome | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Golgi | 0 | 0 | 0 | 0 | 2 | 5 | 16 | 26 | 18 | 32 | 19 | 8 | 1 | 2 | 1 | 1 | 1 | 2 | 0 | 0 | 0 | 0 | 1 | 0 |
Mitochondria | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 3 | 6 | 4 | 4 | 12 | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
Nucleus | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
Nuclear Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 1 |
Nucleolus | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
Peroxisomes | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Vac/Vac Membrane | 0 | 0 | 2 | 2 | 2 | 0 | 2 | 4 | 0 | 2 | 1 | 3 | 0 | 0 | 1 | 0 | 1 | 0 | 0 | 4 | 0 | 5 | 7 | 8 |
Unique Cell Count | 109 | 169 | 242 | 161 | 176 | 245 | 276 | 246 | 271 | 238 | 101 | 103 | 196 | 286 | 275 | 190 | 149 | 123 | 111 | 163 | 217 | 163 | 225 | 294 |
Labelled Cell Count | 110 | 169 | 246 | 162 | 178 | 253 | 288 | 264 | 290 | 271 | 114 | 119 | 198 | 286 | 279 | 200 | 161 | 133 | 111 | 163 | 217 | 163 | 225 | 294 |
Screen | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | AF100 | AF140 | AF180 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Mean Cell GFP Intensity (1e-4) | 189.1 | 156.1 | 139.3 | 125.6 | 76.1 | 78.1 | 67.9 | 61.1 | 58.2 | 59.0 | 54.5 | 49.4 | 149.7 | 150.6 | 133.0 | 152.9 | 177.3 | 177.1 | 150.1 | 165.3 | 165.8 |
Std Deviation (1e-4) | 43.3 | 33.3 | 33.5 | 35.9 | 26.9 | 22.0 | 20.4 | 18.9 | 16.9 | 17.1 | 18.5 | 13.7 | 44.2 | 38.6 | 40.2 | 45.9 | 62.9 | 72.3 | 48.4 | 51.4 | 51.6 |
Intensity Change (Log2) | – | – | – | -0.15 | -0.87 | -0.83 | -1.04 | -1.19 | -1.26 | -1.24 | -1.35 | -1.5 | 0.1 | 0.11 | -0.07 | 0.14 | 0.35 | 0.35 | 0.11 | 0.25 | 0.25 |
Localization | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Cortical Patches | 0 | 0 | 0 | 0 | 3.3 | 3.6 | 3.4 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cell Periphery | 0 | 0 | 0 | 2.1 | 2.7 | 0 | 3.8 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | -1.7 | -3.8 | -5.2 | -7.7 | -9.6 | -7.3 | -9.8 | -9.5 | -8.6 | -0.7 | -0.5 | -0.8 | -1.4 | -0.6 | -0.9 |
Endoplasmic Reticulum | 0 | 2.3 | 4.4 | 5.7 | 6.4 | 4.6 | 6.7 | 5.6 | 0 | 0 | 0 | 0 | 2.7 | 3.2 | 0 |
Endosome | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Golgi | 0 | 0 | 0 | 3.8 | 5.2 | 4.1 | 5.9 | 6.9 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Mitochondria | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleus | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nuclear Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleolus | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Peroxisomes | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Vacuole | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
R1 | R2 | R3 | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Concentration | 144.2422 | 184.8548 | 163.3948 | 171.3258 | 111.631 | 108.6535 | 185.9413 | 232.1701 | 207.9186 | 197.4994 | 199.948 | 109.5544 | 152.0069 | 200.8201 | 182.0814 | 159.5784 | 168.0825 | 177.6941 |
Actin | 0.0044 | 0.0008 | 0.0254 | 0.0005 | 0.0542 | 0.0057 | 0.001 | 0.0005 | 0.005 | 0.0004 | 0.0058 | 0.004 | 0.0075 | 0.0083 | 0.018 | 0.0044 | 0.0015 | 0.0045 |
Bud | 0.0031 | 0.0024 | 0.004 | 0.0026 | 0.0031 | 0.0051 | 0.003 | 0.0018 | 0.003 | 0.005 | 0.0056 | 0.0069 | 0.0052 | 0.004 | 0.0072 | 0.0077 | 0.0067 | 0.007 |
Bud Neck | 0.0016 | 0.0015 | 0.0018 | 0.0007 | 0.0014 | 0.0027 | 0.0009 | 0.0012 | 0.0011 | 0.0008 | 0.0013 | 0.0014 | 0.0011 | 0.0022 | 0.0022 | 0.002 | 0.0021 | 0.0016 |
Bud Periphery | 0.0046 | 0.0018 | 0.0039 | 0.0018 | 0.0024 | 0.0036 | 0.0039 | 0.0012 | 0.0031 | 0.0035 | 0.0063 | 0.0036 | 0.0093 | 0.0029 | 0.006 | 0.0089 | 0.0042 | 0.0063 |
Bud Site | 0.0041 | 0.0017 | 0.0093 | 0.0005 | 0.0076 | 0.0014 | 0.0007 | 0.0038 | 0.0011 | 0.0008 | 0.0008 | 0.0025 | 0.0023 | 0.0052 | 0.0024 | 0.0057 | 0.0017 | 0.0012 |
Cell Periphery | 0.0663 | 0.0471 | 0.0665 | 0.0644 | 0.0155 | 0.0333 | 0.0407 | 0.0162 | 0.039 | 0.0226 | 0.0226 | 0.0095 | 0.0825 | 0.0496 | 0.0596 | 0.0918 | 0.0458 | 0.0926 |
Cytoplasm | 0.3375 | 0.5833 | 0.3348 | 0.263 | 0.2009 | 0.4297 | 0.5252 | 0.7684 | 0.5753 | 0.417 | 0.4886 | 0.2794 | 0.4144 | 0.71 | 0.5255 | 0.2402 | 0.3186 | 0.4392 |
Cytoplasmic Foci | 0.0129 | 0.0122 | 0.0058 | 0.0024 | 0.0356 | 0.0475 | 0.0032 | 0.0023 | 0.0062 | 0.0027 | 0.011 | 0.0996 | 0.0055 | 0.0024 | 0.0042 | 0.0016 | 0.0272 | 0.0025 |
Eisosomes | 0.0076 | 0.0001 | 0.0016 | 0.0001 | 0.0009 | 0.0011 | 0.0004 | 0.0005 | 0.0003 | 0.0001 | 0.0001 | 0.0009 | 0.0016 | 0.0036 | 0.0001 | 0.0014 | 0.0028 | 0.0001 |
Endoplasmic Reticulum | 0.0542 | 0.0191 | 0.0143 | 0.0016 | 0.0018 | 0.0115 | 0.0409 | 0.0192 | 0.0186 | 0.0137 | 0.0222 | 0.0361 | 0.0183 | 0.0066 | 0.0104 | 0.0103 | 0.0053 | 0.0052 |
Endosome | 0.0131 | 0.0074 | 0.0185 | 0.0123 | 0.0175 | 0.0295 | 0.018 | 0.0122 | 0.0166 | 0.0144 | 0.0469 | 0.0734 | 0.0142 | 0.0039 | 0.0239 | 0.0153 | 0.0215 | 0.0051 |
Golgi | 0.0054 | 0.001 | 0.01 | 0.0008 | 0.0073 | 0.0126 | 0.0032 | 0.0017 | 0.0029 | 0.0004 | 0.0091 | 0.019 | 0.0022 | 0.0022 | 0.0038 | 0.0048 | 0.0027 | 0.001 |
Lipid Particles | 0.0074 | 0.002 | 0.0056 | 0.0008 | 0.0127 | 0.0091 | 0.0016 | 0.0005 | 0.0022 | 0.0009 | 0.0042 | 0.061 | 0.0041 | 0.003 | 0.0024 | 0.0058 | 0.0082 | 0.0086 |
Mitochondria | 0.0312 | 0.0072 | 0.0168 | 0.0016 | 0.0573 | 0.0397 | 0.0134 | 0.0103 | 0.0147 | 0.0055 | 0.0191 | 0.0907 | 0.0339 | 0.0045 | 0.0346 | 0.0169 | 0.0268 | 0.0038 |
None | 0.006 | 0.001 | 0.0022 | 0.0002 | 0.0204 | 0.0197 | 0.002 | 0.0003 | 0.0016 | 0.003 | 0.0014 | 0.0384 | 0.0108 | 0.004 | 0.0014 | 0.0016 | 0.0126 | 0.0008 |
Nuclear Periphery | 0.0574 | 0.0189 | 0.0167 | 0.0076 | 0.0135 | 0.0112 | 0.0222 | 0.0041 | 0.0112 | 0.006 | 0.0107 | 0.0127 | 0.0361 | 0.0115 | 0.0135 | 0.0368 | 0.0293 | 0.0264 |
Nucleolus | 0.0143 | 0.0021 | 0.007 | 0.0028 | 0.0317 | 0.0901 | 0.0046 | 0.0006 | 0.0023 | 0.0041 | 0.0017 | 0.0174 | 0.0138 | 0.0047 | 0.004 | 0.011 | 0.0404 | 0.0039 |
Nucleus | 0.0186 | 0.0077 | 0.0102 | 0.0117 | 0.0181 | 0.0178 | 0.009 | 0.0029 | 0.0061 | 0.006 | 0.0056 | 0.0129 | 0.0294 | 0.01 | 0.0132 | 0.0232 | 0.0189 | 0.0179 |
Peroxisomes | 0.0041 | 0.0003 | 0.0019 | 0.0001 | 0.0028 | 0.0018 | 0.0002 | 0.0001 | 0.0007 | 0.0002 | 0.0016 | 0.0041 | 0.0006 | 0.0006 | 0.0014 | 0.0006 | 0.0023 | 0.0003 |
Punctate Nuclear | 0.0004 | 0.0001 | 0.001 | 0 | 0.0004 | 0.0021 | 0.0001 | 0 | 0.0003 | 0.0001 | 0.001 | 0.0054 | 0.0013 | 0.0003 | 0.0002 | 0.0005 | 0.0008 | 0.0002 |
Vacuole | 0.2267 | 0.2177 | 0.3159 | 0.436 | 0.2571 | 0.1313 | 0.22 | 0.1229 | 0.2221 | 0.3518 | 0.2345 | 0.121 | 0.2274 | 0.136 | 0.2023 | 0.3799 | 0.2718 | 0.2639 |
Vacuole Periphery | 0.1189 | 0.0646 | 0.1268 | 0.1885 | 0.2377 | 0.0935 | 0.0858 | 0.0292 | 0.0665 | 0.1409 | 0.1 | 0.1 | 0.0787 | 0.0247 | 0.0636 | 0.1295 | 0.1488 | 0.108 |
R1 | R2 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Gene Expression | 1840.3497 | 1963.1526 | 2206.4862 | 1743.0561 | 2168.5434 | 1986.9067 | 1691.0222 | 1693.0522 | 1827.5761 | 1405.6159 |
Translational Efficiency | 2.0463 | 1.9741 | 1.7468 | 2.2142 | 1.9938 | 1.9305 | 1.7884 | 2.1941 | 1.7882 | 2.1175 |
Dataset | Hit |
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Protein Concentration | ✔ |
Protein Localization | ✔ |
Gene Expression | ✘ |
Translational Efficiency | ✘ |
Temp | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Vph1-GFP) |
---|---|---|---|---|
37℃ | ||||
RT |
Gene / Allele | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Sac6-tdTomato) |
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Gene | Images |
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Gene | Images |
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