Standard name
Human Ortholog
Description Asn rich cytoplasmic protein that contains RGG motifs; high-copy suppressor of group II intron-splicing defects of a mutation in MRS2 and of a conditional mutation in POL1 (DNA polymerase alpha); possible role in mitochondrial mRNA splicing

Micrographs

ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Neck 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Site 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cell Periphery 0 0 0 0 0 0 0.05 0.07 0 0.07 0.06 0 0 0 0.06 0.09 0.14 0 0 0 0 0 0
Cytoplasm 0.97 0.96 0.95 0.96 0.92 0.84 0.84 0.71 0.82 0.67 0.71 0.98 0.99 0.99 0.91 0.95 0.91 0.95 0.93 0.9 0.95 0.88 0.92
Endoplasmic Reticulum 0 0 0.06 0 0 0 0.07 0.05 0 0.05 0.05 0 0 0 0.05 0.05 0.05 0 0 0 0 0 0
Endosome 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Golgi 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Mitochondria 0 0 0 0 0 0.06 0.08 0.26 0.13 0.38 0.2 0 0 0 0 0 0 0 0 0 0 0 0
Nucleus 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nuclear Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nucleolus 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Peroxisomes 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
SpindlePole 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Vac/Vac Membrane 0 0 0 0 0 0.09 0 0 0 0 0.06 0 0 0 0.09 0 0.07 0 0 0 0 0 0
ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 2 2 0 0 2 1 8 2 0 2 3 0 0 0 0 0 0 0 3 0 0 0 0
Bud 0 0 0 0 0 0 0 2 0 0 1 0 0 0 0 0 0 0 2 0 0 0 0
Bud Neck 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
Bud Site 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cell Periphery 3 7 3 7 5 3 10 14 8 17 12 2 6 9 20 38 53 0 0 0 0 0 0
Cytoplasm 191 438 138 150 153 106 186 135 155 172 145 155 265 328 298 385 335 192 439 132 96 142 182
Endoplasmic Reticulum 1 17 8 4 5 3 16 9 3 14 10 4 2 3 17 22 18 3 10 5 1 5 5
Endosome 0 2 0 0 2 0 0 1 0 0 0 0 0 0 0 1 1 1 1 1 0 2 0
Golgi 0 2 0 0 0 1 0 0 0 0 0 0 0 0 7 2 1 1 2 1 0 0 0
Mitochondria 0 0 0 0 3 8 17 49 24 97 41 0 0 0 3 5 1 0 3 2 0 5 2
Nucleus 4 3 0 0 3 1 0 2 4 1 0 0 1 3 2 2 0 0 1 0 0 0 1
Nuclear Periphery 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nucleolus 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
Peroxisomes 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
SpindlePole 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Vac/Vac Membrane 0 2 0 2 4 11 4 5 6 4 12 1 0 2 28 14 26 2 2 0 1 1 2
Unique Cell Count 197 458 145 157 166 126 221 190 190 255 204 158 268 330 328 406 367 204 471 147 102 162 199
Labelled Cell Count 202 473 149 163 177 134 241 219 200 307 224 162 274 345 375 470 435 204 471 147 102 162 199


Cytoplasm

(Huh et al. Nature 2003 425:686)
Screen WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 AF100 AF140 AF180
Mean Cell GFP Intensity (1e-4) 10.2 13.8 11.5 10.6 10.5 9.5 8.8 7.8 8.2 7.1 7.9 11.5 11.8 11.4 17.2 17.3 16.4 10.6 11.1 12.1
Std Deviation (1e-4) 1.3 2.0 1.2 1.5 1.6 2.0 1.5 1.4 1.5 1.3 1.5 1.6 1.3 1.3 7.4 3.7 3.6 1.5 1.7 2.0
Intensity Change (Log2) -0.12 -0.13 -0.28 -0.39 -0.55 -0.48 -0.7 -0.55 0.0 0.04 -0.01 0.58 0.59 0.51 -0.12 -0.05 0.07


Localization RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3
Cortical Patches 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Neck 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Site 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cell Periphery 0 0 0 1.2 2.2 0 2.0 1.7 0 0 0 1.9 2.9 4.0
Cytoplasm 0.2 -1.1 -3.0 -3.2 -5.6 -3.7 -6.4 -5.7 1.4 2.3 3.1 -1.6 -0.2 -1.5
Endoplasmic Reticulum -1.3 -1.1 -1.3 0.7 -0.3 0 0 -0.3 -1.3 0 0 -0.1 0 -0.3
Endosome 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Golgi 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Mitochondria 0 0 0 3.4 6.6 4.4 8.5 5.7 0 0 0 0 0 0
Nucleus 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nuclear Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nucleolus 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Peroxisomes 0 0 0 0 0 0 0 0 0 0 0 0 0 0
SpindlePole 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Vacuole 0 0 3.6 0 0 0 0 0 0 0 0 3.6 0 3.3

Images

Circle plot not available

Protein Concentration and Protein Localization Data

R1 R2 R3
G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase
Concentration 5.6218 7.0962 6.3588 6.0694 5.4474 6.3101 5.5774 6.9365 6.4912 5.2644 5.584 6.4736 6.6302 8.0794 7.565 7.0186 6.6407 7.1781
Actin 0.0066 0.0018 0.0057 0.0033 0.004 0.0013 0.0165 0.0005 0.007 0.0015 0.0016 0.0005 0.0273 0.0075 0.0138 0.0535 0.0006 0.0026
Bud 0.0065 0.0095 0.0181 0.0024 0.0394 0.0145 0.001 0.0034 0.001 0.0007 0.0002 0.0014 0.0019 0.0063 0.0131 0.0011 0.0013 0.0004
Bud Neck 0.0009 0.0004 0.0009 0.0104 0.0029 0.0011 0.0053 0.0003 0.0054 0.0006 0.0005 0.0006 0.014 0.0003 0.0007 0.0026 0.0017 0.0011
Bud Periphery 0.0048 0.0022 0.0069 0.0027 0.041 0.0089 0.0009 0.0009 0.0009 0.0003 0.0001 0.0018 0.0019 0.0025 0.0048 0.0014 0.0014 0.0002
Bud Site 0.0159 0.0142 0.015 0.0113 0.0051 0.0019 0.0027 0.0027 0.0013 0.0008 0.0002 0.0001 0.0036 0.0057 0.0153 0.0034 0.0114 0.0001
Cell Periphery 0.0012 0.0004 0.0004 0.0005 0.0014 0.0005 0.0003 0.0001 0.0003 0.0001 0.0001 0.0001 0.0006 0.0004 0.0008 0.0002 0.0001 0.0001
Cytoplasm 0.7759 0.8967 0.835 0.7279 0.7284 0.8314 0.7417 0.9402 0.8713 0.7867 0.7987 0.8771 0.6815 0.9106 0.8491 0.8363 0.7845 0.8457
Cytoplasmic Foci 0.023 0.02 0.0228 0.0422 0.0264 0.0206 0.0388 0.0131 0.0164 0.018 0.0352 0.0189 0.0315 0.0128 0.0349 0.0159 0.0399 0.0167
Eisosomes 0.0001 0 0 0 0.0001 0 0.0001 0 0 0 0 0 0.0002 0 0.0002 0.0002 0 0
Endoplasmic Reticulum 0.0353 0.0087 0.0133 0.0321 0.0099 0.0244 0.038 0.0054 0.0159 0.0156 0.0086 0.0224 0.0402 0.0237 0.0106 0.0136 0.0547 0.0538
Endosome 0.0533 0.0217 0.049 0.1001 0.0958 0.0596 0.0643 0.0191 0.0456 0.0846 0.1055 0.0453 0.1023 0.0102 0.0176 0.0317 0.0287 0.0423
Golgi 0.008 0.0024 0.005 0.0073 0.011 0.0041 0.0229 0.0024 0.0081 0.0087 0.0239 0.0049 0.0114 0.0012 0.0025 0.0053 0.0038 0.0036
Lipid Particles 0.0011 0.0002 0.0005 0.0068 0.0035 0.0005 0.0105 0.0001 0.0005 0.0267 0.005 0.0009 0.0116 0.0003 0.001 0.0036 0.0143 0.0029
Mitochondria 0.013 0.0014 0.004 0.0135 0.0108 0.0147 0.0143 0.0009 0.0057 0.0095 0.0101 0.0044 0.0062 0.0023 0.0075 0.0014 0.0027 0.0026
None 0.0185 0.009 0.0081 0.0031 0.0039 0.0043 0.0117 0.004 0.0057 0.0027 0.0015 0.0058 0.0075 0.0104 0.012 0.0015 0.0019 0.0023
Nuclear Periphery 0.0109 0.0016 0.002 0.0037 0.0018 0.0022 0.0042 0.0005 0.0023 0.0078 0.0015 0.0036 0.0152 0.0008 0.0016 0.003 0.001 0.0124
Nucleolus 0.0011 0.0002 0.0002 0.0002 0.0002 0.0001 0.0002 0 0.0001 0.0002 0 0.0001 0.0006 0.0002 0.0019 0.0002 0.0102 0.0002
Nucleus 0.008 0.0023 0.0026 0.0024 0.0024 0.0017 0.0021 0.0009 0.0015 0.0168 0.0009 0.0025 0.0105 0.0011 0.0022 0.0018 0.003 0.0033
Peroxisomes 0.0006 0.0002 0.0004 0.0088 0.0008 0.0003 0.0119 0.0001 0.0018 0.001 0.0004 0.003 0.009 0.0002 0.0019 0.0045 0.0195 0.0005
Punctate Nuclear 0.0027 0.001 0.0011 0.0014 0.0005 0.0005 0.0026 0.0001 0.0004 0.0027 0.0002 0.0012 0.004 0.0006 0.002 0.0044 0.0129 0.0016
Vacuole 0.0101 0.0051 0.007 0.0147 0.0082 0.0052 0.0079 0.0046 0.0068 0.011 0.004 0.0034 0.0147 0.0026 0.0054 0.0124 0.0052 0.0053
Vacuole Periphery 0.0026 0.001 0.0019 0.0048 0.0024 0.0023 0.002 0.0008 0.002 0.0039 0.0019 0.0018 0.0042 0.0004 0.0011 0.0021 0.0011 0.0022

Sequencing Data

R1 R2
G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Post-START S/G2 Metaphase Anaphase Telophase
Gene Expression 36.5325 27.6761 39.02 48.8702 39.7392 33.418 43.7938 54.7718 49.5896 51.4531
Translational Efficiency 1.8061 2.2081 1.7149 1.226 1.7537 2.135 1.704 1.3103 1.5568 1.6452

Hit Data

Dataset Hit
Protein Concentration
Protein Localization
Gene Expression
Translational Efficiency

Micrographs

Cell Count

R1 R2 R1 & R2
WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14
1465 895 1400 399 1165 2268 1326 284 2630 3163 2726 683

Protein Abundance

R1 R2 R1 & R2
WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14
Mean 959.08 1126.77 1420.09 1335.30 1075.10 1049.64 1320.13 1221.95 1010.47 1071.46 1371.47 1288.17
Standard Deviation 125.66 201.54 203.40 222.38 158.78 160.63 165.06 202.15 152.59 176.64 192.34 221.37
Intensity Change Log 2 0.232470 0.566259 0.477441 -0.034576 0.296209 0.184714 0.097503 0.429844 0.330146

Localization Score (DeepLoc)

R1 R2 R1 & R2
WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14
Actin 0.000201 0.000373 0.000574 0.002011 0.000359 0.000281 0.000470 0.000523 0.000271 0.000307 0.000524 0.001392
Bud Neck 0.000919 0.000738 0.001442 0.003810 0.000869 0.001593 0.001474 0.005413 0.000897 0.001351 0.001457 0.004477
Bud Site 0.019343 0.030705 0.014382 0.051929 0.026063 0.024525 0.016045 0.029218 0.022320 0.026273 0.015191 0.042486
Cell Periphery 0.000171 0.000217 0.000469 0.001931 0.000524 0.000142 0.000221 0.000278 0.000327 0.000163 0.000348 0.001244
Cytoplasm 0.675706* 0.745616* 0.837768* 0.686908* 0.623665* 0.669499* 0.695834* 0.442401* 0.652654* 0.691037* 0.768728* 0.585239*
Cytoplasmic Foci 0.207751* 0.145421 0.042606 0.071134 0.228598* 0.144073 0.070157 0.085010 0.216986* 0.144455 0.056008 0.076904
Eisosomes 0.000013 0.000008 0.000004 0.000022 0.000015 0.000015 0.000009 0.000017 0.000014 0.000013 0.000007 0.000020
Endoplasmic Reticulum 0.006525 0.004183 0.004873 0.002117 0.015444 0.003704 0.003415 0.000889 0.010476 0.003839 0.004164 0.001607
Endosome 0.011966 0.010401 0.006825 0.010539 0.015469 0.013987 0.010987 0.027616 0.013517 0.012972 0.008850 0.017640
Golgi 0.017580 0.011263 0.005994 0.008982 0.017858 0.013403 0.003772 0.008985 0.017703 0.012797 0.004913 0.008983
Lipid Particles 0.001073 0.001022 0.004617 0.012691 0.001520 0.001111 0.004411 0.004618 0.001271 0.001086 0.004517 0.009334
Mitochondria 0.001524 0.000582 0.000050 0.001954 0.000707 0.002101 0.000104 0.003093 0.001162 0.001671 0.000076 0.002428
Mitotic Spindle 0.000938 0.000894 0.003769 0.007158 0.001538 0.002544 0.002083 0.017073 0.001204 0.002077 0.002949 0.011281
None 0.000431 0.000178 0.000462 0.000105 0.000310 0.000691 0.000233 0.000182 0.000378 0.000546 0.000351 0.000137
Nuclear Periphery 0.000035 0.000030 0.000439 0.000059 0.000055 0.000092 0.000248 0.000266 0.000044 0.000075 0.000346 0.000145
Nuclear Periphery Foci 0.000260 0.000586 0.004328 0.002393 0.000923 0.000202 0.002980 0.002830 0.000553 0.000310 0.003672 0.002575
Nucleolus 0.000058 0.000117 0.000074 0.000120 0.000062 0.000165 0.000128 0.000796 0.000059 0.000152 0.000100 0.000401
Nucleus 0.002682 0.002387 0.007372 0.003353 0.003298 0.004659 0.008122 0.009150 0.002955 0.004016 0.007737 0.005763
Peroxisomes 0.000556 0.000685 0.000206 0.002338 0.000486 0.000945 0.000543 0.003361 0.000525 0.000871 0.000370 0.002764
Vacuole 0.035737 0.036088 0.059481 0.124994 0.041076 0.100588 0.174224 0.353829* 0.038102 0.082337 0.115295 0.220147*
Vacuole Periphery 0.016531 0.008507 0.004266 0.005451 0.021163 0.015680 0.004541 0.004452 0.018583 0.013650 0.004400 0.005035

Localization Changes (T-score)

R1 R2 R1 & R2
UBP2_WT UBP14_WT UBP2UBP14_WT UBP2UBP14_UBP2 UBP2UBP14_UBP14 UBP2_WT UBP14_WT UBP2UBP14_WT UBP2UBP14_UBP2 UBP2UBP14_UBP14 UBP2_WT UBP14_WT UBP2UBP14_WT UBP2UBP14_UBP2 UBP2UBP14_UBP14
Actin -3.06 -4.19 -4.90 -4.32 -3.57 2.00 -1.64 -1.82 -2.64 -0.48 -1.16 -4.45 -5.11 -4.91 -3.61
Bud Neck 1.81 -4.71 -7.92 -8.42 -6.20 -5.32 -6.51 -3.11 -2.55 -2.58 -4.41 -7.57 -6.00 -5.19 -4.85
Bud Site -5.37 3.14 -6.56 -3.57 -7.64 0.91 5.86 -1.14 -1.56 -3.71 -3.02 6.23 -5.95 -4.55 -8.35
Cell Periphery -2.00 -5.87 -3.04 -2.94 -2.38 1.64 1.34 1.18 -2.10 -0.66 1.58 -0.12 -2.37 -3.16 -2.48
Cytoplasm -6.35 -17.08 1.56 5.86 12.16 -4.43 -5.56 8.30 10.99 11.54 -5.19 -14.73 6.42 9.53 15.07
Cytoplasmic Foci 8.16 30.42 20.32 10.54 -5.12 12.74 25.30 18.10 9.41 -1.77 15.19 39.01 27.29 15.30 -4.46
Eisosomes 2.85 5.07 -2.35 -4.69 -6.20 -0.16 3.42 -0.68 -0.41 -3.08 0.45 5.79 -2.42 -2.57 -6.58
Endoplasmic Reticulum 1.83 1.46 4.31 2.65 3.59 6.31 6.59 8.13 6.21 4.38 6.29 6.11 8.95 5.05 4.98
Endosome 1.47 6.23 2.21 0.90 -1.80 1.46 4.93 -2.47 -3.04 -4.28 0.76 7.59 -0.83 -1.21 -4.33
Golgi 5.78 12.27 4.38 1.90 -0.32 4.72 13.39 4.33 2.62 -1.13 6.41 17.83 6.12 3.44 -1.05
Lipid Particles 0.29 -8.96 -6.66 -6.71 -4.62 3.54 -9.91 -4.18 -4.75 -0.03 1.71 -13.06 -7.46 -7.64 -4.41
Mitochondria 2.49 5.67 0.16 -1.05 -1.86 -4.16 5.25 -0.95 -0.05 -1.34 -1.80 7.08 -0.72 -0.06 -2.14
Mitotic Spindle 0.13 -4.14 -2.28 -2.30 -1.14 -1.38 -1.43 -2.33 -2.11 -2.14 -1.70 -4.23 -3.25 -2.88 -2.42
None 3.72 -0.28 4.89 2.72 5.91 -1.43 0.85 1.22 2.04 0.75 -0.91 0.55 3.96 2.29 4.98
Nuclear Periphery 0.46 -1.48 -2.99 -3.27 1.29 -1.64 -1.96 -2.11 -1.52 0.16 -1.93 -2.03 -2.83 -1.65 1.32
Nuclear Periphery Foci -2.82 -14.46 -9.32 -7.61 4.06 2.13 -5.40 -1.99 -3.00 0.52 1.56 -13.55 -5.46 -6.46 2.45
Nucleolus -1.01 -1.13 -3.84 -0.15 -2.27 -3.72 -3.25 -1.49 -1.18 -1.32 -3.71 -3.24 -1.74 -1.09 -1.47
Nucleus 1.09 -11.18 -2.64 -2.87 2.00 -1.55 -4.83 -2.80 -2.27 -0.25 -2.40 -9.48 -3.78 -2.82 1.13
Peroxisomes -1.29 4.83 -6.25 -5.72 -8.07 -7.11 -1.26 -3.77 -3.01 -3.66 -5.53 3.19 -6.31 -5.11 -6.88
Vacuole -0.13 -6.26 -13.26 -13.15 -10.21 -13.47 -20.52 -17.43 -13.95 -9.13 -13.60 -19.83 -20.55 -15.79 -11.75
Vacuole Periphery 5.96 10.76 6.56 2.54 0.11 3.00 10.22 8.78 8.06 0.55 4.29 14.75 10.56 7.89 0.36
Standard name
Human Ortholog
Description Asn rich cytoplasmic protein that contains RGG motifs; high-copy suppressor of group II intron-splicing defects of a mutation in MRS2 and of a conditional mutation in POL1 (DNA polymerase alpha); possible role in mitochondrial mRNA splicing
Localization
Cell Percentages cytoplasm (100%)
Cell Cycle Regulation No
Subcompartmental Group cytoplasm-5

Psp2

Psp2


Nearest neighbours ( genes)

correlation threshold

0.6

1.0

0.80


Biological Process (Gene Ontology)

Molecular Function (Gene Ontology)

Cellular Component (Gene Ontology)


Endocytosis
Temp Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Vph1-GFP)
37℃
RT
Cell Cycle Omics

CYCLoPs (Psp2-GFP)
Gene / Allele Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Sac6-tdTomato)
Gene Images
Gene Images
Images are not yet available
Images are not yet available