Standard name | |
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Human Ortholog | |
Description | Histone E3 ligase, component of CORVET membrane tethering complex; peripheral vacuolar membrane protein required for protein trafficking and vacuole biogenesis; interacts with Pep7p; involved in ubiquitination and degradation of excess histones |
ensLOC | DeepLoc | |||||||||||||||||||||||
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Localization | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | WT1 | WT2 | WT3 | AF100 | AF140 | AF180 |
Cortical Patches | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 1 | 0 | 1 | 2 | 1 | 0 | 3 | 2 | 0 | 0 | 1 | 0 | 0 | 2 | 0 | 1 | 0 |
Bud | 0 | 2 | 4 | 2 | 1 | 13 | 24 | 49 | 32 | 33 | 33 | 59 | 0 | 1 | 2 | 7 | 6 | 3 | 0 | 0 | 3 | 0 | 1 | 1 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 1 | 4 | 1 | 6 | 6 | 0 | 0 | 0 | 0 | 0 | 0 | – | – | – | – | – | – |
Cell Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 1 | 5 | 9 | 14 | 19 | 15 | 18 | 10 | 7 | 13 | 14 | 14 | 1 | 4 | 7 | 39 | 39 | 21 | 0 | 0 | 0 | 0 | 0 | 1 |
Endoplasmic Reticulum | 0 | 1 | 0 | 1 | 0 | 0 | 2 | 2 | 2 | 1 | 2 | 1 | 0 | 2 | 2 | 19 | 27 | 14 | 0 | 0 | 0 | 0 | 1 | 3 |
Endosome | 285 | 7 | 236 | 147 | 206 | 116 | 167 | 125 | 35 | 29 | 48 | 104 | 62 | 114 | 105 | 321 | 439 | 221 | 400 | 86 | 299 | 168 | 277 | 295 |
Golgi | 2 | 1 | 2 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 2 | 4 | 7 | 17 | 9 | 4 | 6 | 2 | 4 | 5 |
Mitochondria | 92 | 59 | 107 | 82 | 95 | 250 | 286 | 281 | 233 | 333 | 390 | 378 | 0 | 12 | 3 | 52 | 75 | 35 | 6 | 3 | 5 | 2 | 4 | 9 |
Nucleus | 7 | 0 | 0 | 0 | 0 | 1 | 3 | 2 | 3 | 0 | 2 | 2 | 0 | 1 | 6 | 8 | 14 | 2 | 1 | 0 | 0 | 0 | 1 | 0 |
Nuclear Periphery | 17 | 7 | 15 | 2 | 8 | 1 | 4 | 3 | 2 | 6 | 4 | 0 | 4 | 11 | 6 | 7 | 10 | 6 | 4 | 0 | 3 | 1 | 4 | 3 |
Nucleolus | 144 | 33 | 135 | 60 | 60 | 79 | 70 | 77 | 40 | 45 | 60 | 51 | 24 | 28 | 29 | 68 | 132 | 81 | 3 | 0 | 1 | 2 | 2 | 1 |
Peroxisomes | 4 | 0 | 25 | 24 | 30 | 48 | 95 | 84 | 49 | 26 | 50 | 114 | 0 | 0 | 0 | 8 | 3 | 0 | 1 | 0 | 5 | 3 | 5 | 4 |
SpindlePole | 61 | 2 | 75 | 50 | 65 | 65 | 110 | 151 | 66 | 68 | 89 | 133 | 22 | 58 | 31 | 97 | 117 | 42 | 18 | 3 | 19 | 10 | 8 | 6 |
Vac/Vac Membrane | 124 | 22 | 21 | 9 | 18 | 13 | 22 | 17 | 3 | 15 | 14 | 23 | 25 | 64 | 65 | 148 | 174 | 100 | 21 | 7 | 4 | 6 | 12 | 12 |
Unique Cell Count | 435 | 98 | 350 | 251 | 336 | 417 | 532 | 546 | 347 | 446 | 539 | 623 | 79 | 189 | 164 | 506 | 638 | 338 | 469 | 111 | 356 | 200 | 328 | 345 |
Labelled Cell Count | 737 | 139 | 629 | 391 | 503 | 602 | 803 | 803 | 476 | 571 | 714 | 886 | 138 | 299 | 260 | 778 | 1043 | 543 | 469 | 111 | 356 | 200 | 328 | 345 |
Screen | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | AF100 | AF140 | AF180 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Mean Cell GFP Intensity (1e-4) | 7.3 | 7.2 | 6.7 | 6.6 | 6.6 | 5.2 | 5.1 | 5.0 | 4.8 | 4.5 | 4.6 | 4.9 | 7.8 | 7.2 | 8.0 | 6.2 | 7.3 | 9.1 | 8.2 | 8.3 | 8.9 |
Std Deviation (1e-4) | 0.9 | 1.6 | 1.4 | 1.5 | 1.8 | 1.4 | 1.1 | 1.2 | 0.9 | 0.9 | 0.9 | 1.0 | 0.8 | 0.8 | 1.0 | 1.1 | 1.4 | 1.7 | 1.3 | 1.2 | 1.7 |
Intensity Change (Log2) | – | – | – | -0.03 | -0.02 | -0.37 | -0.4 | -0.42 | -0.49 | -0.58 | -0.55 | -0.45 | 0.22 | 0.1 | 0.27 | -0.1 | 0.13 | 0.44 | 0.29 | 0.32 | 0.41 |
Localization | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Cortical Patches | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud | 0 | 0 | 1.9 | 2.8 | 4.8 | 0 | 0 | 0 | 5.1 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cell Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 1.9 | 2.0 | 0.8 | 0.7 | -0.8 | -0.5 | 0.3 | 0 | -0.3 | 0 | 0 | 1.0 | 3.2 | 2.5 | 2.3 |
Endoplasmic Reticulum | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 3.7 | 3.9 | 3.8 |
Endosome | -2.2 | -1.7 | -11.0 | -10.5 | -13.3 | 0 | 0 | 0 | -15.9 | 1.9 | -1.7 | -0.8 | -1.2 | 0.4 | -0.6 |
Golgi | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 3.6 |
Mitochondria | 0.5 | -0.7 | 8.1 | 6.8 | 6.2 | 0 | 0 | 0 | 9.0 | -5.7 | -6.5 | -7.4 | -7.5 | -7.3 | -6.6 |
Nucleus | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nuclear Periphery | -2.5 | -1.4 | -3.9 | -3.5 | -3.9 | 0 | 0 | 0 | -5.2 | 0 | 0.8 | -0.3 | -2.6 | -2.6 | -1.9 |
Nucleolus | -3.8 | -6.0 | -6.0 | -8.7 | -8.4 | 0 | 0 | 0 | -11.6 | -1.4 | -5.7 | -4.7 | -8.5 | -6.1 | -4.1 |
Peroxisomes | 1.1 | 0.9 | 2.1 | 4.5 | 3.7 | 0 | 0 | 0 | 4.8 | 0 | -3.8 | -3.5 | -4.2 | -6.0 | -5.0 |
SpindlePole | -0.4 | -0.7 | -2.1 | -0.3 | 2.1 | 0 | 0 | 0 | 0 | 1.2 | 2.4 | -0.7 | -0.8 | -1.2 | -3.1 |
Vacuole | -1.3 | -0.4 | -1.9 | -1.3 | -2.1 | -3.7 | -1.8 | -2.5 | -1.7 | 6.7 | 8.5 | 9.5 | 8.4 | 8.0 | 8.1 |
R1 | R2 | R3 | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Concentration | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |
Actin | 0.022 | 0.0003 | 0.0126 | 0 | 0.0039 | 0.0001 | 0.0114 | 0.0001 | 0.0019 | 0.0004 | 0 | 0.0058 | – | – | – | – | – | – |
Bud | 0.0005 | 0.0002 | 0.0004 | 0 | 0.0007 | 0 | 0.0002 | 0.0001 | 0.0001 | 0.0004 | 0 | 0.0001 | – | – | – | – | – | – |
Bud Neck | 0.0013 | 0.0007 | 0.0007 | 0.0002 | 0.0004 | 0.0006 | 0.0011 | 0.0004 | 0.0053 | 0.0004 | 0.0001 | 0.0002 | – | – | – | – | – | – |
Bud Periphery | 0.0007 | 0.0002 | 0.0004 | 0 | 0.0004 | 0.0001 | 0.0002 | 0.0001 | 0.0002 | 0.0007 | 0 | 0.0001 | – | – | – | – | – | – |
Bud Site | 0.0035 | 0.0124 | 0.0029 | 0.0001 | 0.0026 | 0.0002 | 0.0013 | 0.0005 | 0.0006 | 0.0009 | 0 | 0.0002 | – | – | – | – | – | – |
Cell Periphery | 0.0006 | 0.0003 | 0.0002 | 0.0001 | 0.0001 | 0.0001 | 0.0003 | 0.0001 | 0.0001 | 0.0002 | 0 | 0.0001 | – | – | – | – | – | – |
Cytoplasm | 0.0043 | 0.0032 | 0.0036 | 0.0006 | 0.0627 | 0.0009 | 0.0039 | 0.0008 | 0.0018 | 0.0005 | 0.0004 | 0.0004 | – | – | – | – | – | – |
Cytoplasmic Foci | 0.0939 | 0.1012 | 0.1095 | 0.0841 | 0.1247 | 0.0959 | 0.1357 | 0.1804 | 0.1473 | 0.0577 | 0.0837 | 0.087 | – | – | – | – | – | – |
Eisosomes | 0.0004 | 0 | 0 | 0 | 0 | 0 | 0.0001 | 0 | 0.0001 | 0 | 0 | 0 | – | – | – | – | – | – |
Endoplasmic Reticulum | 0.0018 | 0.0005 | 0.002 | 0.0001 | 0.004 | 0.0003 | 0.0014 | 0.0002 | 0.0005 | 0.0002 | 0.0001 | 0.0006 | – | – | – | – | – | – |
Endosome | 0.4508 | 0.5478 | 0.5238 | 0.5942 | 0.5121 | 0.492 | 0.3875 | 0.4622 | 0.3511 | 0.5854 | 0.5256 | 0.3903 | – | – | – | – | – | – |
Golgi | 0.0564 | 0.0412 | 0.0715 | 0.0469 | 0.0757 | 0.0762 | 0.0596 | 0.0968 | 0.1052 | 0.0753 | 0.0722 | 0.0822 | – | – | – | – | – | – |
Lipid Particles | 0.1879 | 0.1493 | 0.1761 | 0.1909 | 0.1289 | 0.2262 | 0.3138 | 0.1823 | 0.3022 | 0.1745 | 0.2956 | 0.3638 | – | – | – | – | – | – |
Mitochondria | 0.0217 | 0.0015 | 0.0054 | 0.0004 | 0.0179 | 0.0068 | 0.0037 | 0.0042 | 0.0118 | 0.0606 | 0.0006 | 0.0073 | – | – | – | – | – | – |
None | 0.0024 | 0.0002 | 0.0004 | 0 | 0.0018 | 0.0001 | 0.0003 | 0.0001 | 0.0088 | 0.0001 | 0 | 0.0001 | – | – | – | – | – | – |
Nuclear Periphery | 0.024 | 0.0009 | 0.0029 | 0.0003 | 0.0057 | 0.0109 | 0.0014 | 0.0003 | 0.0019 | 0.0002 | 0.0001 | 0.001 | – | – | – | – | – | – |
Nucleolus | 0.0155 | 0.0116 | 0.0087 | 0.002 | 0.0004 | 0.0021 | 0.0006 | 0.0006 | 0.0042 | 0.0006 | 0.0002 | 0.0005 | – | – | – | – | – | – |
Nucleus | 0.0202 | 0.0032 | 0.0109 | 0.0002 | 0.0052 | 0.0004 | 0.0007 | 0.0001 | 0.0008 | 0.0003 | 0 | 0.0001 | – | – | – | – | – | – |
Peroxisomes | 0.031 | 0.0109 | 0.0186 | 0.0059 | 0.0235 | 0.0151 | 0.0492 | 0.0497 | 0.0391 | 0.0097 | 0.0092 | 0.0328 | – | – | – | – | – | – |
Punctate Nuclear | 0.0129 | 0.0014 | 0.0008 | 0.0007 | 0.0024 | 0.007 | 0.0015 | 0.0013 | 0.0031 | 0.0002 | 0.0006 | 0.0008 | – | – | – | – | – | – |
Vacuole | 0.032 | 0.088 | 0.0372 | 0.0572 | 0.0133 | 0.0437 | 0.0211 | 0.014 | 0.0091 | 0.0209 | 0.0079 | 0.0136 | – | – | – | – | – | – |
Vacuole Periphery | 0.0161 | 0.0249 | 0.0115 | 0.0159 | 0.0136 | 0.0213 | 0.0052 | 0.0059 | 0.0049 | 0.0109 | 0.0036 | 0.0127 | – | – | – | – | – | – |
R1 | R2 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Gene Expression | 14.105 | 11.1725 | 16.8179 | 19.329 | 15.0469 | 14.6325 | 17.7517 | 18.0807 | 17.5683 | 19.5542 |
Translational Efficiency | 0.6221 | 0.5996 | 0.5151 | 0.4958 | 0.512 | 0.6533 | 0.6308 | 0.5261 | 0.5761 | 0.5865 |
Dataset | Hit |
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Protein Concentration | – |
Protein Localization | ✘ |
Gene Expression | ✘ |
Translational Efficiency | ✘ |
Temp | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Vph1-GFP) |
---|---|---|---|---|
37℃ | ||||
RT |
Gene / Allele | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Sac6-tdTomato) |
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Gene | Images |
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Gene | Images |
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