Standard name
Human Ortholog
Description Sugar alcohol phosphatase; polyol phosphatase that hydrolyzes sorbitol-6-phosphate, ribitol-5-phosphate, and (D)-glycerol-3-phosphate, maintaining phosphoglucose isomerase (PGI) activity in the presence of PGI-inhibitory sugar alcohols; expression correlated with growth rate; GFP-fusion protein localizes to the cytoplasm and nucleus; homozygous diploid mutant displays increased glycogen accumulation; member of the haloacid dehalogenase (HAD) superfamily

Micrographs

ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Neck 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Site 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cell Periphery 0 0 0 0 0 0 0 0 0 0 0.06 0 0 0 0 0 0 0 0 0 0 0 0
Cytoplasm 0.98 0.99 0.98 0.98 0.91 0.92 0.89 0.83 0.81 0.78 0.72 0.99 0.99 0.99 0.99 0.99 0.98 0.93 0.95 0.97 0.96 0.96 0.95
Endoplasmic Reticulum 0 0 0 0 0 0 0 0.08 0.06 0.06 0.06 0 0 0 0 0 0 0 0 0 0 0 0
Endosome 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Golgi 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Mitochondria 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nucleus 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nuclear Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nucleolus 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Peroxisomes 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
SpindlePole 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Vac/Vac Membrane 0 0 0 0 0.07 0.06 0.08 0 0.1 0.09 0.15 0 0 0 0 0 0 0 0 0 0 0 0
ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0 0 0 0 0 1 1 2 0 2 3 0 0 0 0 0 0 3 0 0 0 0 0
Bud 0 1 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 2 3 0 0 4 2
Bud Neck 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Site 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cell Periphery 0 8 0 1 4 0 7 9 9 2 10 5 7 7 5 5 8 0 0 0 0 0 0
Cytoplasm 460 662 196 126 208 193 165 221 223 145 124 376 636 634 220 226 260 439 650 193 212 511 381
Endoplasmic Reticulum 3 1 1 0 6 3 4 22 16 11 10 0 4 5 1 3 7 5 2 0 1 8 4
Endosome 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Golgi 0 0 0 1 2 0 0 1 6 2 5 0 2 1 0 0 0 0 0 0 1 0 0
Mitochondria 0 2 0 0 0 3 1 6 2 8 6 1 0 0 0 0 0 1 2 0 0 0 0
Nucleus 1 2 1 1 1 1 2 6 6 3 0 1 0 2 2 0 2 3 8 0 1 1 2
Nuclear Periphery 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 1 1
Nucleolus 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
Peroxisomes 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
SpindlePole 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0
Vac/Vac Membrane 7 4 3 1 17 12 15 12 27 17 25 0 0 0 1 1 0 3 8 0 1 3 4
Unique Cell Count 470 668 199 128 229 210 186 267 275 187 172 378 642 639 223 228 264 472 685 200 221 535 403
Labelled Cell Count 471 680 201 130 238 214 195 279 289 191 185 383 649 649 229 235 277 472 685 200 221 535 403


Cytoplasm, Nucleus

(Huh et al. Nature 2003 425:686)
Screen WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 AF100 AF140 AF180
Mean Cell GFP Intensity (1e-4) 26.6 23.9 22.3 22.6 23.6 15.3 19.6 17.6 17.9 16.1 17.4 28.0 27.4 26.6 33.3 35.8 35.2 23.7 24.1 24.2
Std Deviation (1e-4) 6.2 5.1 4.1 4.2 5.6 3.9 3.6 3.7 3.2 3.5 3.2 5.4 4.8 4.7 8.3 8.8 8.3 5.8 5.0 5.4
Intensity Change (Log2) 0.02 0.08 -0.54 -0.18 -0.34 -0.31 -0.47 -0.36 0.33 0.3 0.25 0.58 0.68 0.66 0.09 0.11 0.12


Localization RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3
Cortical Patches 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Neck 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Site 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cell Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cytoplasm 0 -3.4 -3.1 -4.0 -5.5 -5.8 -6.4 -7.4 1.2 0.7 0.9 0.1 0.6 0
Endoplasmic Reticulum 0 0 0 0 3.8 3.1 3.0 3.0 0 0 0 0 0 0
Endosome 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Golgi 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Mitochondria 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nucleus 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nuclear Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nucleolus 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Peroxisomes 0 0 0 0 0 0 0 0 0 0 0 0 0 0
SpindlePole 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Vacuole 0 2.9 2.3 3.0 1.8 3.7 3.4 4.7 0 0 0 0 0 0

Images

Circle plot not available

Protein Concentration and Protein Localization Data

R1 R2 R3
G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase
Concentration 13.8511 18.9283 17.6853 14.3537 14.99 17.8759 22.8567 27.0974 24.0994 23.1924 22.8144 25.0841 23.5421 28.7558 25.9465 25.9949 22.6045 25.5716
Actin 0.0116 0.0001 0.0026 0.0065 0.0008 0.0001 0.0039 0.0006 0.0039 0.0021 0.0044 0.0023 0.0011 0.0001 0.0002 0.0001 0.0003 0.0003
Bud 0.0009 0 0.0002 0.0009 0.0001 0.0001 0.0061 0.0002 0.0008 0.0002 0.0002 0.0005 0.0002 0 0 0 0.0001 0
Bud Neck 0.0017 0.0001 0.0004 0.0008 0.0004 0.0006 0.0014 0.0001 0.0013 0.0007 0.0012 0.001 0.0004 0.0002 0.0002 0.0003 0.0008 0.0006
Bud Periphery 0.0008 0 0.0001 0.0005 0.0001 0 0.0027 0 0.0007 0.0004 0.0001 0.0005 0.0001 0 0 0 0 0
Bud Site 0.0031 0.0001 0.0009 0.0036 0.0003 0 0.0018 0.0001 0.002 0.0001 0.0003 0.0003 0.0002 0 0 0 0.0002 0
Cell Periphery 0.0004 0 0 0.0001 0.0001 0 0.0021 0 0.0002 0.0003 0.0003 0.0001 0 0 0 0 0.0001 0
Cytoplasm 0.8227 0.9878 0.9492 0.8366 0.9104 0.9734 0.8928 0.9877 0.9055 0.9633 0.9008 0.9633 0.9592 0.9918 0.9823 0.9912 0.9637 0.9793
Cytoplasmic Foci 0.0256 0.0003 0.0066 0.0459 0.0044 0.0006 0.0087 0.0007 0.0161 0.0006 0.01 0.0017 0.0028 0.0003 0.0036 0.0002 0.0037 0.0008
Eisosomes 0.0003 0 0 0.0001 0.0001 0 0 0 0.0001 0.0001 0 0 0 0 0 0 0 0
Endoplasmic Reticulum 0.0097 0.0003 0.0009 0.003 0.0057 0.0008 0.0039 0.0004 0.0024 0.005 0.0092 0.001 0.0028 0.0005 0.0005 0.0003 0.0019 0.0011
Endosome 0.0328 0.0001 0.0097 0.0426 0.0161 0.0006 0.0108 0.0001 0.0162 0.0008 0.0245 0.003 0.0026 0.0001 0.001 0.0001 0.0026 0.0003
Golgi 0.0076 0 0.0014 0.0108 0.0009 0 0.0036 0 0.0029 0.0004 0.0067 0.0005 0.0007 0 0.0002 0 0.0002 0
Lipid Particles 0.0137 0 0.0027 0.0136 0.0024 0 0.0068 0 0.0046 0.0001 0.0021 0.0001 0.0036 0 0.0013 0 0.0005 0
Mitochondria 0.0065 0 0.0067 0.0075 0.0011 0.0002 0.0048 0 0.0044 0.0066 0.0016 0.0014 0.0005 0 0.0001 0 0.0002 0
None 0.0055 0.0002 0.0006 0.0027 0.0064 0.0003 0.0019 0.0004 0.0025 0.0006 0.001 0.0005 0.0017 0.0002 0.0003 0.0002 0.0026 0.0008
Nuclear Periphery 0.0146 0.0011 0.0013 0.0031 0.0096 0.0029 0.0054 0.0008 0.0051 0.0021 0.0082 0.0016 0.0026 0.0006 0.0009 0.0006 0.0022 0.002
Nucleolus 0.0004 0 0.0001 0.0003 0.0094 0 0.0003 0 0.0009 0 0.0001 0.0001 0.0001 0 0 0 0.0011 0
Nucleus 0.0243 0.0094 0.0088 0.0098 0.0183 0.0197 0.0338 0.0082 0.0221 0.0156 0.0203 0.0197 0.0166 0.0059 0.0082 0.0067 0.0127 0.014
Peroxisomes 0.0048 0 0.0049 0.0035 0.0002 0 0.0017 0 0.0022 0 0.0008 0.0003 0.0032 0 0.0007 0 0.0001 0
Punctate Nuclear 0.0049 0.0001 0.0003 0.0054 0.0101 0.0002 0.0018 0.0002 0.002 0.0004 0.0035 0.0004 0.0009 0.0001 0.0002 0.0001 0.0055 0.0004
Vacuole 0.0061 0.0001 0.0017 0.0017 0.0024 0.0005 0.0049 0.0001 0.0034 0.0005 0.0041 0.0014 0.0006 0.0001 0.0001 0.0001 0.0013 0.0002
Vacuole Periphery 0.002 0 0.0006 0.001 0.0009 0.0001 0.0008 0 0.0007 0.0001 0.0006 0.0004 0.0001 0 0 0 0.0001 0

Sequencing Data

R1 R2
G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Post-START S/G2 Metaphase Anaphase Telophase
Gene Expression 284.9702 298.9019 288.3375 236.4947 209.8625 247.5969 282.9872 236.8923 244.8918 213.7221
Translational Efficiency 1.4375 1.4521 1.4131 1.8039 1.8202 1.6417 1.69 1.9726 1.7502 1.8061

Hit Data

Dataset Hit
Protein Concentration
Protein Localization
Gene Expression
Translational Efficiency
Standard name
Human Ortholog
Description Sugar alcohol phosphatase; polyol phosphatase that hydrolyzes sorbitol-6-phosphate, ribitol-5-phosphate, and (D)-glycerol-3-phosphate, maintaining phosphoglucose isomerase (PGI) activity in the presence of PGI-inhibitory sugar alcohols; expression correlated with growth rate; GFP-fusion protein localizes to the cytoplasm and nucleus; homozygous diploid mutant displays increased glycogen accumulation; member of the haloacid dehalogenase (HAD) superfamily
Localization
Cell Percentages cytoplasm (98%)
Cell Cycle Regulation No
Subcompartmental Group cytoplasm-7

Pyp1

Pyp1


Nearest neighbours ( genes)

correlation threshold

0.6

1.0

0.80


Biological Process (Gene Ontology)

Molecular Function (Gene Ontology)

Cellular Component (Gene Ontology)


Endocytosis
Temp Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Vph1-GFP)
37℃
RT
Cell Cycle Omics

CYCLoPs (Pyp1-GFP)
Gene / Allele Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Sac6-tdTomato)
Gene Images
Gene Images
Images are not yet available
Images are not yet available