Standard name
Human Ortholog
Description Ribosomal 60S subunit protein L9B; homologous to mammalian ribosomal protein L9 and bacterial L6; RPL9B has a paralog, RPL9A, that arose from a single-locus duplication
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Micrographs

ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Neck 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Site 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 – – – – – –
Cell Periphery 0 0 0 0 0 0 0 0 0.07 0.07 0.05 0.08 0 0 0 0 0 0.05 0 0 0 0 0 0
Cytoplasm 1.0 0.99 0.99 0.99 0.99 0.95 0.92 0.86 0.85 0.79 0.82 0.72 0.99 1.0 0.99 1.0 0.99 0.98 0.91 0.95 0.92 0.94 0.94 0.92
Endoplasmic Reticulum 0 0 0 0 0 0 0.05 0.11 0.11 0.16 0.12 0.22 0 0 0 0 0.06 0.09 0 0 0 0 0 0
Endosome 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Golgi 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Mitochondria 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nucleus 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nuclear Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nucleolus 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Peroxisomes 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
SpindlePole 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Vac/Vac Membrane 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0
Bud 0 0 0 0 3 3 2 1 1 4 3 2 0 0 0 0 0 0 0 0 1 0 1 3
Bud Neck 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Site 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 – – – – – –
Cell Periphery 0 2 0 3 4 9 15 15 19 22 14 27 6 7 6 6 1 6 0 0 0 0 0 0
Cytoplasm 138 145 81 194 338 288 391 344 240 255 230 245 208 577 515 217 146 121 121 143 64 215 338 431
Endoplasmic Reticulum 0 0 0 0 4 5 22 45 30 51 35 75 0 1 2 7 9 11 1 0 0 6 6 11
Endosome 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Golgi 0 0 0 0 0 1 0 0 0 2 1 4 0 0 0 0 0 0 0 0 0 0 0 1
Mitochondria 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
Nucleus 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 2
Nuclear Periphery 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nucleolus 0 0 0 0 0 0 0 3 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Peroxisomes 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
SpindlePole 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Vac/Vac Membrane 0 0 1 0 0 0 1 0 0 0 1 1 0 0 0 0 0 0 1 0 0 0 2 4
Unique Cell Count 138 147 82 195 343 302 423 398 283 322 281 342 210 579 519 218 147 124 133 151 70 229 360 469
Labelled Cell Count 138 147 83 197 349 306 431 408 290 337 285 355 214 585 523 230 156 139 133 151 70 229 360 469


Cytoplasm

(Huh et al. Nature 2003 425:686)
Screen WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 AF100 AF140 AF180
Mean Cell GFP Intensity (1e-4) 346.8 369.3 301.6 319.4 253.4 151.5 165.0 143.3 136.2 127.5 125.4 119.8 387.0 352.4 339.6 345.3 317.2 360.1 347.8 358.3 374.4
Std Deviation (1e-4) 66.6 94.5 85.6 73.0 48.7 45.8 33.9 32.1 28.6 29.8 31.1 25.8 84.5 82.2 75.7 75.8 102.3 80.9 64.5 75.7 91.8
Intensity Change (Log2) – – – 0.08 -0.25 -0.99 -0.87 -1.07 -1.15 -1.24 -1.27 -1.33 0.36 0.22 0.17 0.2 0.07 0.26 0.21 0.25 0.31


Localization RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3
Cortical Patches 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Neck 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Site 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cell Periphery 0 0 0 0 0 0 0 0 2.6 0 0 0 0 0 0
Cytoplasm 0.6 -0.2 -1.4 -2.1 -3.2 -3.4 -4.2 -3.9 -5.2 0.2 1.1 0.4 0.7 0.4 -0.6
Endoplasmic Reticulum 0 0 0 0 3.2 3.1 3.9 3.4 4.7 0 0 0 0 0 0
Endosome 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Golgi 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Mitochondria 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nucleus 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nuclear Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nucleolus 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Peroxisomes 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
SpindlePole 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Vacuole 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Images

Circle plot not available

Protein Concentration and Protein Localization Data

R1 R2 R3
G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase
Concentration 315.3883 430.8171 374.2625 362.4774 357.8761 355.2666 346.0394 516.2098 471.7162 456.9757 417.0684 327.5256 387.9027 532.9316 464.1705 429.8235 370.7876 399.2538
Actin 0.0099 0.0006 0.0074 0.0005 0.027 0.0031 0.0433 0.0007 0.0017 0.002 0.0837 0.0037 0.0059 0.0008 0.0077 0.001 0.0011 0.0041
Bud 0.0064 0.0034 0.0049 0.0063 0.0113 0.0073 0.0034 0.0028 0.009 0.0071 0.0037 0.0068 0.005 0.0049 0.0045 0.0057 0.0025 0.0085
Bud Neck 0.0017 0.0011 0.0022 0.0011 0.0015 0.004 0.0089 0.0008 0.0013 0.0013 0.0023 0.0041 0.001 0.0008 0.001 0.0009 0.0013 0.0027
Bud Periphery 0.008 0.0018 0.0029 0.0019 0.0073 0.0067 0.0034 0.0013 0.0067 0.0022 0.0012 0.0044 0.0052 0.0019 0.0019 0.0017 0.0016 0.0046
Bud Site 0.0023 0.0018 0.0136 0.0008 0.001 0.0006 0.0045 0.0015 0.0017 0.0009 0.0011 0.0013 0.0022 0.0019 0.0017 0.0015 0.0006 0.0017
Cell Periphery 0.0586 0.041 0.0338 0.0934 0.0129 0.0173 0.0339 0.0184 0.0364 0.0312 0.0144 0.0265 0.0492 0.0247 0.032 0.0402 0.0322 0.0297
Cytoplasm 0.4941 0.8052 0.7092 0.4355 0.3596 0.6333 0.4991 0.8602 0.7049 0.5321 0.538 0.5335 0.5253 0.8297 0.6595 0.3533 0.448 0.4253
Cytoplasmic Foci 0.0024 0.0006 0.0108 0.0013 0.0048 0.003 0.0114 0.0006 0.0019 0.0168 0.0341 0.1141 0.0065 0.0006 0.0028 0.0012 0.0212 0.0042
Eisosomes 0.0009 0 0.0008 0.0001 0.0001 0 0.0055 0.0001 0.0006 0.0011 0.0008 0.0002 0.0028 0.0001 0.0009 0.0001 0.0004 0.0002
Endoplasmic Reticulum 0.0266 0.0049 0.0034 0.0008 0.0033 0.0583 0.0179 0.0019 0.0028 0.0014 0.0017 0.0046 0.0124 0.0017 0.0027 0.0009 0.0032 0.0044
Endosome 0.0068 0.0011 0.0019 0.0032 0.0232 0.0103 0.0082 0.0007 0.0017 0.0026 0.0185 0.0047 0.0076 0.0009 0.0025 0.0013 0.0049 0.0069
Golgi 0.005 0.0001 0.0004 0.0001 0.0297 0.002 0.0053 0.0001 0.0004 0.0004 0.0141 0.0006 0.0021 0.0001 0.0015 0.0001 0.0009 0.001
Lipid Particles 0.0052 0.0009 0.0032 0.0016 0.0049 0.0014 0.0075 0.0004 0.0011 0.0039 0.0078 0.0042 0.0085 0.0004 0.0028 0.0009 0.0105 0.0017
Mitochondria 0.0493 0.0024 0.0174 0.0044 0.0162 0.0297 0.0509 0.0044 0.0268 0.0144 0.0172 0.0206 0.0523 0.006 0.0229 0.0437 0.0198 0.0336
None 0.0083 0.0007 0.0032 0.0013 0.0012 0.0018 0.0126 0.0013 0.0087 0.0053 0.0053 0.0121 0.0109 0.0013 0.0072 0.0035 0.015 0.0044
Nuclear Periphery 0.058 0.0119 0.0172 0.0157 0.0207 0.0453 0.071 0.0092 0.015 0.0484 0.0235 0.0143 0.0803 0.0087 0.0292 0.0403 0.0477 0.0304
Nucleolus 0.0135 0.0017 0.0222 0.0113 0.0075 0.0106 0.0226 0.0046 0.0176 0.0376 0.0168 0.0217 0.0195 0.005 0.02 0.0732 0.0418 0.0321
Nucleus 0.0451 0.0207 0.0272 0.0369 0.0675 0.0377 0.0601 0.0335 0.0422 0.0709 0.0512 0.044 0.0686 0.0423 0.0522 0.1725 0.0635 0.139
Peroxisomes 0.0009 0.0001 0.0012 0.0003 0.0012 0.0005 0.0072 0.0002 0.0007 0.001 0.0368 0.0016 0.0057 0.0002 0.001 0.0012 0.0011 0.0015
Punctate Nuclear 0.0008 0 0.0005 0.0001 0.0004 0.0003 0.0039 0.0001 0.0001 0.0006 0.0044 0.0011 0.0012 0.0001 0.0008 0.0002 0.0184 0.0006
Vacuole 0.1423 0.0819 0.0917 0.2677 0.2312 0.0759 0.0832 0.0444 0.0847 0.1156 0.0768 0.1384 0.0849 0.0509 0.0989 0.148 0.1337 0.1592
Vacuole Periphery 0.0541 0.0177 0.0247 0.1158 0.1675 0.051 0.0363 0.0128 0.0337 0.1034 0.0466 0.0375 0.0427 0.0168 0.0462 0.1084 0.1307 0.1043

Sequencing Data

R1 R2
G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Post-START S/G2 Metaphase Anaphase Telophase
Gene Expression 703.995 815.1303 857.7348 1069.3601 987.2714 656.6983 840.6263 881.1412 800.3348 997.1604
Translational Efficiency 1.5475 1.54 1.831 1.1347 1.6186 1.6387 1.5634 1.6703 1.7369 1.6612

Hit Data

Dataset Hit
Protein Concentration ✔
Protein Localization ✔
Gene Expression ✘
Translational Efficiency ✘

Micrographs

Cell Count

R1 R2 R1 & R2
WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14
1078 893 2471 1598 2191 2328 3002 1336 3269 3221 5473 2934

Protein Abundance

R1 R2 R1 & R2
WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14
Mean 15193.05 19148.17 27394.73 23795.36 15562.21 20516.07 24631.07 19714.77 15440.47 20136.83 25878.83 21937.26
Standard Deviation 3721.35 5229.11 4756.59 6442.70 4300.51 5068.97 5007.74 6166.97 4122.19 5150.40 5085.44 6637.38
Intensity Change Log 2 — 0.333795 0.850487 0.647269 — 0.398707 0.662432 0.341230 — 0.367006 0.758394 0.500518

Localization Score (DeepLoc)

R1 R2 R1 & R2
WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14
Actin 0.000088 0.000131 0.000054 0.000160 0.000020 0.000032 0.000039 0.000136 0.000042 0.000059 0.000045 0.000149
Bud Neck 0.000435 0.000682 0.000397 0.001285 0.000130 0.000201 0.000210 0.001327 0.000230 0.000335 0.000295 0.001304
Bud Site 0.002314 0.002641 0.001505 0.004016 0.001081 0.001536 0.002003 0.005850 0.001488 0.001842 0.001778 0.004851
Cell Periphery 0.036060 0.024881 0.015177 0.030924 0.009611 0.008423 0.007878 0.011092 0.018333 0.012986 0.011173 0.021893
Cytoplasm 0.472377* 0.552025* 0.619009* 0.592019* 0.734275* 0.765906* 0.840215* 0.743867* 0.647910* 0.706609* 0.740343* 0.661163*
Cytoplasmic Foci 0.009214 0.011050 0.005970 0.003935 0.014370 0.008498 0.002396 0.005795 0.012670 0.009205 0.004010 0.004782
Eisosomes 0.000003 0.000004 0.000001 0.000003 0.000001 0.000001 0.000001 0.000002 0.000001 0.000002 0.000001 0.000003
Endoplasmic Reticulum 0.001277 0.000626 0.001184 0.000368 0.001913 0.000873 0.000448 0.000123 0.001703 0.000805 0.000781 0.000257
Endosome 0.000609 0.000561 0.000468 0.000394 0.000489 0.000437 0.000209 0.000854 0.000529 0.000471 0.000326 0.000604
Golgi 0.082085 0.074504 0.030743 0.013067 0.042592 0.041960 0.006341 0.006471 0.055615 0.050983 0.017358 0.010064
Lipid Particles 0.026386 0.014790 0.011262 0.016722 0.006091 0.007048 0.004160 0.008368 0.012784 0.009195 0.007366 0.012918
Mitochondria 0.000303 0.000298 0.000331 0.000578 0.000369 0.000307 0.000277 0.000334 0.000348 0.000305 0.000301 0.000467
Mitotic Spindle 0.000709 0.000998 0.000541 0.000975 0.000447 0.000606 0.000105 0.001248 0.000533 0.000715 0.000302 0.001099
None 0.002777 0.004214 0.001249 0.002093 0.003013 0.003232 0.001129 0.003645 0.002935 0.003504 0.001183 0.002799
Nuclear Periphery 0.001465 0.001961 0.000918 0.000682 0.000497 0.000470 0.000137 0.000353 0.000816 0.000884 0.000490 0.000532
Nuclear Periphery Foci 0.016375 0.015511 0.010285 0.006134 0.007645 0.009117 0.002043 0.003317 0.010524 0.010890 0.005764 0.004851
Nucleolus 0.000132 0.000246 0.000087 0.000200 0.000085 0.000059 0.000081 0.000293 0.000100 0.000111 0.000084 0.000242
Nucleus 0.011574 0.016965 0.006578 0.022228 0.006145 0.005952 0.007628 0.046706 0.007936 0.009005 0.007154 0.033374
Peroxisomes 0.000018 0.000017 0.000028 0.000098 0.000049 0.000017 0.000071 0.000082 0.000039 0.000017 0.000051 0.000091
Vacuole 0.181018 0.147477 0.187923 0.266751* 0.052863 0.067071 0.100512 0.145869 0.095124 0.089363 0.139977 0.211707*
Vacuole Periphery 0.154781* 0.130418* 0.106291* 0.037369 0.118314* 0.078253 0.024117 0.014270 0.130339* 0.092715 0.061218 0.026851

Localization Changes (T-score)

R1 R2 R1 & R2
UBP2_WT UBP14_WT UBP2UBP14_WT UBP2UBP14_UBP2 UBP2UBP14_UBP14 UBP2_WT UBP14_WT UBP2UBP14_WT UBP2UBP14_UBP2 UBP2UBP14_UBP14 UBP2_WT UBP14_WT UBP2UBP14_WT UBP2UBP14_UBP2 UBP2UBP14_UBP14
Actin -1.15 1.59 -2.30 -0.98 -2.93 -3.82 -3.53 -3.61 -3.17 -2.87 -1.62 -1.22 -4.40 -3.50 -4.07
Bud Neck -2.98 -0.96 -5.70 -4.87 -5.53 -1.63 -2.61 -9.91 -9.42 -9.26 -2.52 -3.51 -10.49 -9.79 -9.78
Bud Site -0.75 1.96 -4.32 -3.40 -6.97 -2.96 -5.86 -7.19 -6.58 -5.95 -1.93 -1.88 -9.30 -8.41 -8.79
Cell Periphery 4.78 10.90 3.97 -0.92 -7.16 1.54 2.26 0.41 -0.70 -1.24 5.76 8.44 -0.43 -5.41 -7.59
Cytoplasm -4.74 -10.71 -7.77 -2.01 2.73 -3.31 -13.04 3.11 6.09 14.72 -6.75 -11.77 1.35 8.12 13.36
Cytoplasmic Foci -1.63 3.53 2.92 4.30 0.13 5.08 11.69 2.26 -1.68 -6.86 3.87 11.41 4.46 1.37 -5.69
Eisosomes -0.87 4.22 -1.55 -0.49 -5.49 -2.22 -1.50 -6.06 -5.33 -5.47 -0.84 2.70 -5.84 -5.06 -7.62
Endoplasmic Reticulum 3.44 0.63 5.03 3.33 8.21 5.41 8.05 10.16 9.49 6.78 6.23 6.73 10.79 8.41 9.59
Endosome 0.78 2.91 1.93 1.42 0.51 1.43 9.46 -0.78 -0.94 -1.67 1.81 7.83 -0.22 -0.60 -1.57
Golgi 1.68 16.53 23.24 17.48 18.33* 0.28 20.44 20.81 21.49 1.53 2.12 23.52 29.22 26.16 14.39
Lipid Particles 5.20 7.70 4.69 -0.98 -4.27 -1.47 3.28 -3.22 -2.17 -5.01 4.01 6.84 -0.57 -4.55 -7.35
Mitochondria 0.04 -0.36 -1.45 -1.55 -1.35 1.30 1.33 0.22 -0.48 -0.65 0.86 0.62 -1.26 -1.64 -1.54
Mitotic Spindle -1.36 1.63 -1.82 -1.37 -2.00 -2.93 10.66 -3.62 -3.44 -3.97 -2.56 5.77 -4.00 -3.66 -4.35
None -1.80 4.15 1.28 2.49 -2.61 -0.34 4.76 -1.13 -0.73 -3.94 -1.14 6.10 -0.07 0.97 -4.75
Nuclear Periphery -1.59 3.73 5.61 3.93 3.11 0.24 6.75 -1.63 -1.94 -6.69 -0.80 4.99 1.55 1.87 -3.73
Nuclear Periphery Foci 0.54 6.08 10.96 7.93 6.66 -2.26 10.94 6.07 8.39 -5.45 -0.78 9.33 10.21 10.22 1.61
Nucleolus -1.56 1.55 -3.45 -0.06 -6.04 2.71 0.27 -3.21 -3.48 -3.25 -0.52 1.24 -4.62 -4.11 -4.99
Nucleus -2.42 1.97 -8.57 -6.34 -11.24 -0.11 -2.67 -17.85 -18.02 -17.30 -1.40 -0.59 -20.08 -19.83 -20.37
Peroxisomes 0.33 -2.44 -1.43 -1.46 -1.25 2.81 -1.33 -1.01 -3.10 -0.01 2.82 -1.18 -1.41 -2.26 -1.03
Vacuole 3.53 -1.56 -9.02 -12.21 -8.86 -4.30 -12.62 -15.06 -12.22 -6.88 1.15 -12.37 -21.26 -22.00 -12.59
Vacuole Periphery 3.21 8.16 21.47 17.07 22.86* 9.01 25.54 29.05* 23.25 8.97 9.70 21.02 33.90 25.68 21.20*
Standard name
Human Ortholog
Description Ribosomal 60S subunit protein L9B; homologous to mammalian ribosomal protein L9 and bacterial L6; RPL9B has a paralog, RPL9A, that arose from a single-locus duplication
Localization
Cell Percentages cytoplasm (99%)
Cell Cycle Regulation No
Subcompartmental Group cytoplasm-1

Rpl9b

Rpl9b


Nearest neighbours ( genes)

correlation threshold

0.6

1.0

0.80


Biological Process (Gene Ontology)
Molecular Function (Gene Ontology)
Cellular Component (Gene Ontology)

Endocytosis
Temp Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Vph1-GFP)
37℃
RT
Cell Cycle Omics

CYCLoPs (Rpl9b-GFP)
Gene / Allele Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Sac6-tdTomato)
Gene Images
Gene Images
Images are not yet available
Images are not yet available