Standard name
Human Ortholog
Description Protein with positive role in the multivesicular body sorting pathway; functions and forms a complex with Did2p; recruitment to endosomes is mediated by the Vps2p-Vps24p subcomplex of ESCRT-III; also interacts with Vps4p

Micrographs

ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud 0 0 0 0 0 0 0.09 0.08 0.06 0.05 0.07 0.05 0 0 0 0 0 0 0 0 0
Bud Neck 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Site 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cell Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cytoplasm 0 0 0 0 0.05 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Endoplasmic Reticulum 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Endosome 0.41 0.52 0.47 0.42 0.5 0.48 0.32 0.32 0.25 0.23 0.16 0.22 0.55 0.59 0.63 0.7 0.63 0.63 0.66 0.65 0.74
Golgi 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Mitochondria 0.41 0.23 0.07 0.08 0.11 0.09 0.31 0.26 0.45 0.44 0.61 0.44 0.12 0.05 0 0 0 0 0 0 0
Nucleus 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nuclear Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nucleolus 0.18 0.37 0.18 0.24 0.19 0.17 0.14 0.17 0.18 0.14 0.14 0.14 0.22 0.16 0.15 0 0 0 0 0 0
Peroxisomes 0.32 0.07 0.05 0.21 0.15 0.27 0.18 0.05 0.09 0.06 0 0 0.27 0.34 0.27 0.09 0.07 0.08 0.06 0.11 0.09
SpindlePole 0.36 0.18 0.44 0.6 0.42 0.43 0.38 0.37 0.28 0.28 0.16 0.22 0.35 0.32 0.39 0.15 0.23 0.22 0.21 0.17 0.08
Vac/Vac Membrane 0 0.11 0.09 0 0 0 0 0.07 0 0.08 0.08 0.14 0 0 0 0 0 0 0 0 0
ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0 2 1 1 1 1 4 10 1 11 1 0 1 3 1 0 0 0 0 0 3
Bud 0 2 2 5 2 11 34 24 21 23 21 17 2 1 3 0 1 0 0 2 1
Bud Neck 0 1 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0
Bud Site 0 0 1 0 0 0 1 0 0 3 2 1 0 0 0
Cell Periphery 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0
Cytoplasm 0 4 4 8 12 10 14 7 11 12 5 12 6 5 11 0 2 0 1 1 0
Endoplasmic Reticulum 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0
Endosome 9 68 45 81 129 117 120 92 83 101 47 72 103 167 200 34 94 75 98 218 226
Golgi 0 1 1 1 5 0 1 3 0 2 0 1 5 12 7 1 1 1 4 6 8
Mitochondria 9 30 7 15 27 22 117 76 151 190 176 143 22 13 6 1 2 1 0 5 4
Nucleus 0 0 0 0 0 2 3 2 6 12 8 10 0 0 2 0 0 0 0 0 0
Nuclear Periphery 0 3 0 0 0 3 2 2 2 2 3 2 2 2 0 0 0 0 1 2 2
Nucleolus 4 49 17 46 49 41 53 50 62 60 39 45 42 47 48 0 0 0 0 1 1
Peroxisomes 7 9 5 41 39 66 66 15 29 27 12 8 50 96 86 4 10 9 9 37 27
SpindlePole 8 24 42 117 108 105 144 107 93 122 45 73 66 90 124 7 34 26 31 58 24
Vac/Vac Membrane 0 15 9 0 10 5 15 19 15 33 24 47 4 9 13 0 0 1 0 0 1
Unique Cell Count 22 131 96 195 256 246 376 290 337 436 287 328 188 285 317 49 151 121 150 337 306
Labelled Cell Count 37 208 134 315 382 383 574 408 474 601 383 432 304 445 501 49 151 121 150 337 306


Endosome

(Huh et al. Nature 2003 425:686)
Screen WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 AF100 AF140 AF180
Mean Cell GFP Intensity (1e-4) 7.3 10.8 8.7 9.2 9.7 8.8 7.7 7.9 6.6 7.0 6.2 6.8 10.5 11.6 11.7 10.4 11.3 12.1
Std Deviation (1e-4) 1.0 1.7 1.5 1.7 1.8 1.7 1.5 1.4 1.2 1.2 1.1 1.2 1.6 1.6 2.0 1.6 2.2 2.1
Intensity Change (Log2) 0.08 0.15 0.01 -0.19 -0.15 -0.41 -0.31 -0.49 -0.37 0.27 0.41 0.42 0.26 0.37 0.47


Localization RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3
Cortical Patches 0 0 0 0 0 0 0 0 0 0 0 0
Bud 0 0 0 2.3 2.1 1.6 0 1.9 0 0 0 0
Bud Neck 0 0 0 0 0 0 0 0 0 0 0 0
Bud Site 0 0 0 0 0 0 0 0 0 0 0 0
Cell Periphery 0 0 0 0 0 0 0 0 0 0 0 0
Cytoplasm 0 0 0 0 0 0 0 0 0 0 0 0
Endoplasmic Reticulum 0 0 0 0 0 0 0 0 0 0 0 0
Endosome -0.9 0.6 0.1 -2.7 -2.7 -4.2 -4.7 -6.1 -4.8 1.3 2.0 2.8
Golgi 0 0 0 0 0 0 0 0 0 0 0 0
Mitochondria 0.1 0.9 0.5 4.7 3.9 6.7 6.7 9.2 6.5 1.2 -1.0 0
Nucleus 0 0 0 0 0 0 0 0 0 0 0 0
Nuclear Periphery 0 0 0 0 0 0 0 0 0 0 0 0
Nucleolus 1.1 0.3 -0.2 -0.9 -0.1 0.2 -1.0 -1.0 -1.0 0.9 -0.3 -0.6
Peroxisomes 3.5 2.5 4.4 3.0 0 1.1 0.4 0 0 4.3 5.5 4.5
SpindlePole 2.6 -0.3 -0.2 -1.0 -1.2 -3.0 -3.0 -5.7 -4.2 -1.4 -2.2 -0.8
Vacuole 0 -2.0 0 0 -0.9 -1.9 -0.6 -0.3 1.3 0 0 -2.0

Images

Circle plot not available

Protein Concentration and Protein Localization Data

R1 R2 R3
G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase
Concentration 3.2675 4.5909 4.152 3.1994 2.7483 3.9194 3.3985 4.7227 4.2618 3.7268 3.9344 4.5544 3.0189 4.4043 3.956 4.4668 3.3204 3.86
Actin 0.0094 0.0064 0.0068 0.0012 0.0112 0.0007 0.0167 0.0005 0.0092 0.0014 0.0004 0.0004 0.0187 0.0003 0.0077 0.0019 0.0189 0.002
Bud 0.0001 0.0013 0.0003 0.0016 0.0003 0.0003 0.0019 0.0002 0.0047 0.0005 0.0001 0 0.0003 0 0.0001 0 0.0003 0
Bud Neck 0.0007 0.0004 0.0003 0.0003 0.0005 0.0003 0.0028 0.0003 0.0005 0.0046 0.0002 0.0003 0.0004 0.0002 0.0003 0.0002 0.0003 0.0003
Bud Periphery 0.0001 0.001 0.0003 0.0011 0.0003 0.0001 0.0006 0.0001 0.0012 0.0004 0 0 0.0003 0 0.0002 0 0.0004 0
Bud Site 0.0004 0.0044 0.0006 0.0015 0.0007 0.0009 0.002 0.0017 0.0023 0.0064 0.0003 0.0001 0.002 0.0002 0.0005 0.0001 0.0008 0.0002
Cell Periphery 0 0.0001 0 0.0008 0.0001 0 0.0002 0 0.0001 0.0001 0 0 0.0001 0 0.0001 0 0 0
Cytoplasm 0.0047 0.0011 0.0006 0.0033 0.0011 0.0023 0.0178 0.0024 0.0036 0.0027 0.0025 0.0004 0.0035 0.0007 0.0012 0.0003 0.0006 0.0005
Cytoplasmic Foci 0.2587 0.3214 0.2471 0.3462 0.1888 0.1852 0.1832 0.2857 0.231 0.2577 0.1721 0.1738 0.2516 0.2788 0.2566 0.1789 0.1805 0.1868
Eisosomes 0 0 0 0.0001 0.0001 0 0.0001 0 0.0001 0 0 0 0.0002 0 0.0002 0 0.0001 0
Endoplasmic Reticulum 0.0009 0.0001 0.0001 0.0005 0.0009 0.0005 0.0017 0.0008 0.0003 0.0004 0.0005 0.0002 0.0008 0.0001 0.001 0.0001 0.0002 0.0003
Endosome 0.1413 0.1378 0.1106 0.2439 0.2976 0.1109 0.1971 0.2148 0.1869 0.2803 0.295 0.1407 0.146 0.1657 0.1614 0.1445 0.1266 0.1461
Golgi 0.0579 0.0578 0.0858 0.0797 0.1342 0.0755 0.0861 0.0975 0.0998 0.0887 0.0638 0.0869 0.0794 0.0949 0.1141 0.1385 0.1107 0.0836
Lipid Particles 0.3206 0.2541 0.2641 0.1307 0.2054 0.3662 0.227 0.1981 0.1841 0.1242 0.2849 0.3636 0.305 0.2936 0.2237 0.2653 0.2351 0.4248
Mitochondria 0.0027 0.0007 0.0092 0.0293 0.0523 0.0014 0.0157 0.0014 0.0069 0.0028 0.001 0.0043 0.0086 0.0008 0.006 0.0013 0.0044 0.0031
None 0.0007 0.0001 0.0001 0.0021 0.0002 0.0006 0.0085 0.0004 0.0007 0.0008 0.0004 0.0001 0.0105 0.0001 0.0056 0 0.0001 0.0002
Nuclear Periphery 0.0058 0.0001 0.0003 0.0006 0.0018 0.0029 0.0021 0.0006 0.0003 0.0003 0.0008 0.0042 0.0017 0.0001 0.0012 0.0001 0.0003 0.0038
Nucleolus 0.0005 0.0023 0.0012 0.0098 0.0002 0.0058 0.0012 0.0003 0.0006 0.0006 0.0003 0.0002 0.0008 0.0003 0.0005 0.0001 0.0001 0.002
Nucleus 0.0012 0.0002 0.0003 0.0056 0.0002 0.0013 0.0036 0.0003 0.0009 0.0006 0.0003 0.0006 0.0004 0 0.0004 0 0 0.0004
Peroxisomes 0.1849 0.1973 0.2469 0.1343 0.0966 0.219 0.2126 0.1864 0.2597 0.2223 0.1556 0.2155 0.1468 0.1551 0.2111 0.2663 0.3179 0.1332
Punctate Nuclear 0.0071 0.0107 0.0241 0.0015 0.0013 0.0221 0.0038 0.0067 0.0038 0.002 0.0175 0.0024 0.0207 0.0074 0.0055 0.0007 0.0011 0.0104
Vacuole 0.0014 0.0022 0.0007 0.0039 0.0038 0.0029 0.0127 0.0012 0.0022 0.0025 0.0029 0.0049 0.0014 0.001 0.0014 0.0011 0.0009 0.0013
Vacuole Periphery 0.0009 0.0006 0.0005 0.002 0.0024 0.001 0.0027 0.0005 0.0011 0.0009 0.0013 0.0014 0.0011 0.0007 0.0012 0.0006 0.0009 0.001

Sequencing Data

R1 R2
G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Post-START S/G2 Metaphase Anaphase Telophase
Gene Expression 18.4516 8.7971 11.4237 17.2402 13.5565 17.2119 20.2912 16.8844 20.5649 18.8348
Translational Efficiency 1.5028 2.7782 2.0056 1.6462 2.3079 2.2249 1.7085 2.1246 1.9017 2.1913

Hit Data

Dataset Hit
Protein Concentration
Protein Localization
Gene Expression
Translational Efficiency

Micrographs

Cell Count

R1 R2 R1 & R2
WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14
782 958 1734 1980 1553 1605 673 1497 2335 2563 2407 3477

Protein Abundance

R1 R2 R1 & R2
WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14
Mean 950.79 751.39 1172.87 1261.06 936.87 986.32 1317.95 995.18 941.53 898.51 1213.43 1146.59
Standard Deviation 140.02 141.39 253.02 173.35 162.72 116.84 176.47 123.50 155.63 170.12 243.03 202.51
Intensity Change Log 2 -0.339565 0.302844 0.407438 0.074207 0.492375 0.087109 -0.119412 0.400022 0.257322

Localization Score (DeepLoc)

R1 R2 R1 & R2
WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14
Actin 0.000650 0.004718 0.002184 0.012785 0.001719 0.000393 0.000955 0.001100 0.001361 0.002010 0.001840 0.007754
Bud Neck 0.007943 0.008790 0.015152 0.005347 0.003945 0.004128 0.024328 0.006467 0.005284 0.005871 0.017718 0.005829
Bud Site 0.004718 0.019160 0.012172 0.005696 0.004749 0.003853 0.010333 0.005551 0.004738 0.009575 0.011658 0.005634
Cell Periphery 0.000085 0.000332 0.000167 0.000140 0.000098 0.000032 0.000129 0.000057 0.000094 0.000144 0.000157 0.000104
Cytoplasm 0.002794 0.021896 0.004327 0.002411 0.004128 0.002037 0.001538 0.001725 0.003681 0.009460 0.003547 0.002115
Cytoplasmic Foci 0.143416 0.186744* 0.216595* 0.176909 0.135047 0.171087 0.214323* 0.184761* 0.137850 0.176939 0.215960* 0.180290*
Eisosomes 0.000133 0.000113 0.000137 0.000195 0.000144 0.000024 0.000154 0.000042 0.000140 0.000057 0.000142 0.000129
Endoplasmic Reticulum 0.000242 0.001269 0.000608 0.000309 0.000262 0.000180 0.000485 0.000440 0.000255 0.000587 0.000574 0.000366
Endosome 0.214299* 0.281342* 0.267602* 0.264849* 0.228865* 0.502356* 0.259379* 0.464863* 0.223987* 0.419746* 0.265303* 0.350963*
Golgi 0.045906 0.051482 0.032677 0.120377* 0.049983 0.029068 0.032069 0.029149 0.048618 0.037446 0.032507 0.081099
Lipid Particles 0.163856* 0.102377* 0.178356* 0.214973* 0.183173* 0.069093 0.148854* 0.081567 0.176703* 0.081534 0.170107* 0.157536*
Mitochondria 0.002032 0.003201 0.009258 0.049841 0.004447 0.006088 0.007776 0.003181 0.003638 0.005009 0.008844 0.029751
Mitotic Spindle 0.009582 0.013573 0.049218 0.014837 0.006143 0.020463 0.040989 0.023153 0.007294 0.017888 0.046917 0.018418
None 0.000093 0.003915 0.000239 0.000112 0.000294 0.000032 0.000086 0.000059 0.000227 0.001484 0.000196 0.000089
Nuclear Periphery 0.000230 0.000163 0.002491 0.001626 0.000254 0.000209 0.003707 0.000502 0.000246 0.000192 0.002831 0.001142
Nuclear Periphery Foci 0.034432 0.041871 0.042503 0.006586 0.022768 0.016731 0.080933 0.028995 0.026674 0.026128 0.053248 0.016234
Nucleolus 0.000721 0.006699 0.005109 0.000438 0.001316 0.001130 0.006686 0.003144 0.001117 0.003212 0.005550 0.001603
Nucleus 0.000234 0.012640 0.002209 0.000098 0.000953 0.000753 0.001689 0.002354 0.000712 0.005196 0.002064 0.001070
Peroxisomes 0.365515* 0.219861* 0.127422* 0.088987 0.346864* 0.160507* 0.120364* 0.142414* 0.353110* 0.182692* 0.125449* 0.111989*
Vacuole 0.002940 0.018648 0.027809 0.025049 0.004557 0.010380 0.040163 0.018591 0.004016 0.013470 0.031263 0.022269
Vacuole Periphery 0.000181 0.001206 0.003763 0.008436 0.000290 0.001453 0.005060 0.001885 0.000254 0.001361 0.004126 0.005615

Localization Changes (T-score)

R1 R2 R1 & R2
UBP2_WT UBP14_WT UBP2UBP14_WT UBP2UBP14_UBP2 UBP2UBP14_UBP14 UBP2_WT UBP14_WT UBP2UBP14_WT UBP2UBP14_UBP2 UBP2UBP14_UBP14 UBP2_WT UBP14_WT UBP2UBP14_WT UBP2UBP14_UBP2 UBP2UBP14_UBP14
Actin -4.39 -3.33 -8.70 -4.75 -7.24 4.10 2.19 1.61 -2.72 -0.51 -1.65 -1.28 -7.72 -6.48 -6.80
Bud Neck -0.61 -5.01 1.74 4.00 12.14 -0.38 -11.08 -3.55 -2.74 9.27 -0.97 -14.04 -1.08 0.02 14.68
Bud Site -7.34 -6.75 -1.31 6.92 6.29 0.89 -4.55 -1.12 -2.38 4.05 -5.18 -8.33 -1.73 4.23 7.63
Cell Periphery -6.20 -6.05 -5.07 4.96 2.92 8.67 -3.21 4.87 -5.89 9.58 -3.19 -6.84 -1.60 2.67 6.81
Cytoplasm -7.42 -1.87 0.36 7.92 3.87 2.15 3.07 2.52 0.44 -1.19 -5.24 -0.15 2.26 7.47 3.73
Cytoplasmic Foci -5.46 -10.08 -5.03 1.48 6.75 -6.61 -9.65 -8.81 -2.30 3.50 -8.68 -15.74 -10.28 -0.77 7.46
Eisosomes 1.30 -0.24 -4.75 -6.75 -3.69 11.42 -0.50 9.63 -7.48 8.50 9.95 -0.04 1.30 -11.61 1.12
Endoplasmic Reticulum -8.01 -4.92 -1.13 8.03 5.09 1.79 -3.95 -2.61 -3.69 -0.00 -6.17 -6.08 -2.72 3.83 3.59
Endosome -5.07 -4.87 -5.10 0.95 -0.08 -28.48* -2.57 -24.25 3.67 -17.39 -24.82 -5.48 -18.51 8.73 -12.88
Golgi -1.45 5.40 -18.25 -17.26 -24.26* 9.86 7.35 10.01 -0.00 1.24 6.55 9.84 -12.69 -17.85 -20.43
Lipid Particles 6.02 -1.17 -4.94 -13.70 -4.79 15.68 3.42 13.63 -2.13 6.91 15.93 1.27 3.08 -14.94 1.73
Mitochondria -2.00 -7.62 -15.70 -15.27 -12.93 -1.24 -2.20 1.71 2.25 3.09 -1.59 -6.22 -14.34 -12.80 -10.90
Mitotic Spindle -1.94 -9.81 -2.15 0.33 9.16 -6.28 -7.06 -6.92 -0.89 3.18 -6.17 -13.23 -7.03 0.17 9.01
None -3.36 -1.91 -0.28 3.35 2.34 2.55 2.04 2.18 -1.77 0.71 -2.91 0.31 1.93 3.27 2.52
Nuclear Periphery 1.72 -14.36 -13.26 -13.67 4.87 1.56 -8.10 -5.07 -5.69 7.44 2.30 -15.76 -13.98 -14.56 9.71
Nuclear Periphery Foci -1.66 -1.85 7.36 8.62 13.76 1.83 -8.95 -2.03 -3.60 7.65 -0.35 -8.60 4.74 4.82 13.20
Nucleolus -5.86 -6.53 1.25 6.27 7.33 0.06 -4.66 -2.35 -2.51 2.62 -4.40 -7.25 -1.31 3.12 6.11
Nucleus -5.64 -3.49 2.39 5.70 3.72 0.32 -1.64 -2.13 -2.38 -1.01 -5.16 -2.92 -1.15 4.63 2.00
Peroxisomes 11.48 21.35 25.05* 14.70 6.73 20.26* 23.40 22.52 2.43 -2.84 22.76* 32.69 35.40* 12.78 2.65
Vacuole -9.72 -18.12 -15.86 -1.75 2.01 -4.51 -12.10 -8.58 -4.53 6.53 -9.59 -20.34 -16.40 -5.65 5.84
Vacuole Periphery -6.13 -7.50 -12.28 -10.45 -5.63 -4.73 -6.94 -5.04 -1.10 4.24 -6.67 -9.82 -13.07 -9.66 -2.56
Standard name
Human Ortholog
Description Protein with positive role in the multivesicular body sorting pathway; functions and forms a complex with Did2p; recruitment to endosomes is mediated by the Vps2p-Vps24p subcomplex of ESCRT-III; also interacts with Vps4p
Localization
Cell Percentages endosome (63%)
Cell Cycle Regulation No
Subcompartmental Group N/A

Ist1

Ist1


Nearest neighbours ( genes)

correlation threshold

0.6

1.0

0.80


Biological Process (Gene Ontology)

Molecular Function (Gene Ontology)

Cellular Component (Gene Ontology)


Endocytosis
Temp Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Vph1-GFP)
37℃
RT
Cell Cycle Omics

CYCLoPs (Ist1-GFP)
Gene / Allele Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Sac6-tdTomato)
Gene Images
Gene Images
Images are not yet available
Images are not yet available