Standard name | |
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Human Ortholog | |
Description | 3-phosphoserine aminotransferase; catalyzes the formation of phosphoserine from 3-phosphohydroxypyruvate, required for serine and glycine biosynthesis; regulated by the general control of amino acid biosynthesis mediated by Gcn4p; protein abundance increases in response to DNA replication stress |
ensLOC | DeepLoc | |||||||||||||||||||||||
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Localization | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | WT1 | WT2 | WT3 | AF100 | AF140 | AF180 |
Cortical Patches | 0 | 0 | 0 | 0 | 1 | 2 | 2 | 8 | 5 | 10 | 2 | 4 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
Bud | 1 | 3 | 0 | 0 | 2 | 0 | 4 | 1 | 1 | 2 | 1 | 0 | 3 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 5 | 2 | 10 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | – | – | – | – | – |
Cell Periphery | 1 | 3 | 14 | 7 | 12 | 11 | 23 | 29 | 18 | 27 | 19 | 30 | 30 | 23 | 13 | 15 | 7 | 8 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 260 | 307 | 278 | 196 | 249 | 286 | 373 | 301 | 239 | 212 | 172 | 220 | 443 | 594 | 585 | 332 | 236 | 193 | 248 | 296 | 263 | 503 | 433 | 621 |
Endoplasmic Reticulum | 0 | 1 | 3 | 1 | 7 | 8 | 43 | 33 | 38 | 19 | 17 | 38 | 2 | 1 | 2 | 13 | 12 | 18 | 0 | 0 | 4 | 1 | 2 | 6 |
Endosome | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Golgi | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 3 | 0 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Mitochondria | 2 | 0 | 0 | 0 | 0 | 2 | 3 | 1 | 3 | 11 | 6 | 6 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
Nucleus | 0 | 0 | 0 | 0 | 0 | 2 | 3 | 2 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 4 | 0 | 1 |
Nuclear Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 3 | 1 | 0 |
Nucleolus | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Peroxisomes | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
Vac/Vac Membrane | 0 | 1 | 0 | 0 | 4 | 4 | 8 | 15 | 2 | 4 | 3 | 6 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 5 | 5 | 5 |
Unique Cell Count | 262 | 309 | 284 | 200 | 267 | 303 | 446 | 364 | 294 | 262 | 209 | 283 | 451 | 597 | 587 | 333 | 236 | 195 | 253 | 302 | 278 | 531 | 452 | 656 |
Labelled Cell Count | 264 | 315 | 295 | 204 | 275 | 315 | 460 | 390 | 308 | 288 | 221 | 305 | 480 | 621 | 600 | 361 | 255 | 219 | 253 | 302 | 278 | 531 | 452 | 656 |
Screen | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | AF100 | AF140 | AF180 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Mean Cell GFP Intensity (1e-4) | 56.8 | 85.1 | 61.5 | 52.2 | 43.5 | 37.6 | 33.4 | 32.5 | 31.7 | 29.8 | 28.9 | 28.3 | 96.3 | 87.8 | 81.0 | 109.0 | 101.3 | 107.5 | 68.8 | 70.6 | 75.3 |
Std Deviation (1e-4) | 12.4 | 17.7 | 12.2 | 11.7 | 9.9 | 8.5 | 7.7 | 8.2 | 7.9 | 7.9 | 7.6 | 8.0 | 33.8 | 21.9 | 19.7 | 30.2 | 27.3 | 34.6 | 17.5 | 17.8 | 21.3 |
Intensity Change (Log2) | – | – | – | -0.24 | -0.5 | -0.71 | -0.88 | -0.92 | -0.96 | -1.05 | -1.09 | -1.12 | 0.65 | 0.51 | 0.4 | 0.83 | 0.72 | 0.81 | 0.16 | 0.2 | 0.29 |
Localization | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Cortical Patches | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cell Periphery | -0.8 | -0.2 | -0.8 | 0.1 | 1.5 | 0.6 | 2.4 | 1.8 | 2.5 | 1.0 | -0.7 | -2.2 | -0.2 | -1.1 | -0.4 |
Cytoplasm | 0.1 | -2.7 | -2.2 | -6.0 | -6.2 | -6.5 | -6.5 | -6.1 | -7.3 | 0.3 | 2.2 | 2.6 | 2.1 | 2.2 | 0.9 |
Endoplasmic Reticulum | 0 | 0 | 1.4 | 4.7 | 4.4 | 5.6 | 3.7 | 3.9 | 5.7 | 0 | 0 | 0 | 2.2 | 2.7 | 4.3 |
Endosome | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Golgi | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Mitochondria | 0 | 0 | 0 | 0 | 0 | 0 | 3.5 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleus | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nuclear Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleolus | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Peroxisomes | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Vacuole | 0 | 0 | 0 | 0 | 3.5 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
R1 | R2 | R3 | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Concentration | 89.9289 | 108.2825 | 103.5878 | 100.748 | 92.7026 | 101.886 | 104.4257 | 133.3336 | 115.9162 | 105.0146 | 92.1307 | 120.3445 | 97.1214 | 126.0857 | 110.84 | 114.1106 | 111.9901 | 113.9193 |
Actin | 0.0021 | 0.0002 | 0 | 0 | 0.0002 | 0.0002 | 0.0033 | 0.0001 | 0.0002 | 0.0001 | 0.0196 | 0.0001 | 0.0011 | 0.0001 | 0.0005 | 0 | 0 | 0.0002 |
Bud | 0.0003 | 0.0001 | 0.0001 | 0 | 0.0002 | 0.0001 | 0.0006 | 0 | 0.0003 | 0.0003 | 0.0004 | 0 | 0.0008 | 0 | 0.0004 | 0 | 0 | 0.0001 |
Bud Neck | 0.0004 | 0.0001 | 0.0003 | 0.0002 | 0.0004 | 0.0008 | 0.0003 | 0.0002 | 0.0003 | 0.0003 | 0.0008 | 0.0005 | 0.0003 | 0.0001 | 0.0002 | 0.0002 | 0.0002 | 0.0008 |
Bud Periphery | 0.0002 | 0 | 0.0001 | 0 | 0.0002 | 0.0001 | 0.0009 | 0 | 0.0005 | 0.0002 | 0.0004 | 0 | 0.0006 | 0 | 0.0004 | 0 | 0 | 0 |
Bud Site | 0.0002 | 0.0003 | 0 | 0 | 0.0002 | 0 | 0.0003 | 0 | 0.0001 | 0.0001 | 0.0005 | 0 | 0.0008 | 0 | 0.0004 | 0 | 0 | 0.0001 |
Cell Periphery | 0.0015 | 0.0006 | 0.0003 | 0.0005 | 0.0017 | 0.0006 | 0.0025 | 0.0009 | 0.0025 | 0.0013 | 0.001 | 0.0002 | 0.0017 | 0.0001 | 0.0007 | 0.0005 | 0.0002 | 0.0003 |
Cytoplasm | 0.9589 | 0.9946 | 0.9893 | 0.9927 | 0.9566 | 0.9821 | 0.9493 | 0.995 | 0.9683 | 0.9721 | 0.8782 | 0.9926 | 0.9278 | 0.9974 | 0.9631 | 0.9948 | 0.9887 | 0.9812 |
Cytoplasmic Foci | 0.0012 | 0.0002 | 0.0001 | 0.0002 | 0.0047 | 0.0004 | 0.0055 | 0.0001 | 0.003 | 0.0008 | 0.0088 | 0.0002 | 0.0124 | 0.0001 | 0.0039 | 0.0001 | 0.0016 | 0.0024 |
Eisosomes | 0.0001 | 0 | 0 | 0 | 0.0005 | 0 | 0.0001 | 0 | 0.0001 | 0 | 0.0005 | 0 | 0.0002 | 0 | 0.0003 | 0 | 0 | 0.0001 |
Endoplasmic Reticulum | 0.0016 | 0.0006 | 0.0017 | 0.0005 | 0.0008 | 0.0009 | 0.0014 | 0.0008 | 0.0005 | 0.0011 | 0.0011 | 0.0006 | 0.0015 | 0.0001 | 0.0005 | 0.0005 | 0.0002 | 0.0003 |
Endosome | 0.0007 | 0 | 0.0001 | 0.0001 | 0.0004 | 0.0004 | 0.0012 | 0 | 0.0002 | 0.0003 | 0.0029 | 0 | 0.0031 | 0 | 0.0003 | 0 | 0.0001 | 0.0003 |
Golgi | 0.0002 | 0 | 0 | 0 | 0.0002 | 0 | 0.0002 | 0 | 0 | 0 | 0.0034 | 0 | 0.0004 | 0 | 0.0001 | 0 | 0 | 0.0001 |
Lipid Particles | 0.0007 | 0.0001 | 0 | 0.0002 | 0.0033 | 0.0002 | 0.0018 | 0.0001 | 0.0009 | 0.0005 | 0.0046 | 0.0001 | 0.0024 | 0 | 0.0014 | 0 | 0.0004 | 0.0012 |
Mitochondria | 0.0008 | 0.0001 | 0.0001 | 0 | 0.0018 | 0.0006 | 0.0019 | 0 | 0.0012 | 0.0001 | 0.0044 | 0 | 0.0029 | 0 | 0.0072 | 0 | 0.0001 | 0.0004 |
None | 0.0016 | 0.0004 | 0.0002 | 0.0001 | 0.004 | 0.0004 | 0.004 | 0.0001 | 0.0047 | 0.0025 | 0.0185 | 0.0003 | 0.0108 | 0.0001 | 0.0062 | 0 | 0.0015 | 0.0015 |
Nuclear Periphery | 0.0025 | 0.0005 | 0.001 | 0.002 | 0.0015 | 0.0022 | 0.0041 | 0.0004 | 0.001 | 0.0028 | 0.0032 | 0.0013 | 0.0036 | 0.0003 | 0.0016 | 0.0006 | 0.0012 | 0.001 |
Nucleolus | 0.0069 | 0.0001 | 0.0002 | 0 | 0.008 | 0.0011 | 0.006 | 0 | 0.0049 | 0.0006 | 0.0096 | 0.0001 | 0.0038 | 0 | 0.0042 | 0 | 0.0006 | 0.0036 |
Nucleus | 0.0084 | 0.001 | 0.0027 | 0.002 | 0.0042 | 0.0042 | 0.0093 | 0.0011 | 0.0032 | 0.0047 | 0.0117 | 0.0029 | 0.0093 | 0.0013 | 0.0035 | 0.0027 | 0.0031 | 0.0037 |
Peroxisomes | 0.0001 | 0 | 0 | 0 | 0.0002 | 0 | 0.0003 | 0 | 0.0001 | 0 | 0.0009 | 0 | 0.0004 | 0 | 0.0003 | 0 | 0 | 0.0001 |
Punctate Nuclear | 0.0004 | 0 | 0 | 0 | 0.0008 | 0.0001 | 0.0016 | 0 | 0.0004 | 0.0002 | 0.0023 | 0.0001 | 0.0061 | 0 | 0.001 | 0 | 0.0003 | 0.0008 |
Vacuole | 0.0093 | 0.0008 | 0.0029 | 0.0013 | 0.0088 | 0.0043 | 0.0045 | 0.0011 | 0.0063 | 0.011 | 0.0219 | 0.0008 | 0.0081 | 0.0002 | 0.0025 | 0.0004 | 0.0013 | 0.0011 |
Vacuole Periphery | 0.002 | 0.0001 | 0.0009 | 0.0002 | 0.0013 | 0.0014 | 0.0011 | 0 | 0.0012 | 0.0011 | 0.0053 | 0.0001 | 0.0019 | 0 | 0.0014 | 0 | 0.0003 | 0.0004 |
R1 | R2 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Gene Expression | 344.5817 | 187.644 | 156.4909 | 207.6497 | 222.7805 | 313.7578 | 207.9857 | 205.9608 | 205.2596 | 233.1686 |
Translational Efficiency | 1.8083 | 2.1129 | 1.9324 | 1.5835 | 1.6919 | 2.1993 | 1.7795 | 1.8168 | 1.8385 | 1.7296 |
Dataset | Hit |
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Protein Concentration | ✘ |
Protein Localization | ✘ |
Gene Expression | ✔ |
Translational Efficiency | ✘ |
Temp | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Vph1-GFP) |
---|---|---|---|---|
37℃ | ||||
RT |
Gene / Allele | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Sac6-tdTomato) |
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Gene | Images |
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Gene | Images |
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