Standard name
Human Ortholog
Description Protein with rhodanese activity; contains a rhodanese-like domain similar to Rdl1p, Uba4p, Tum1p, and Ych1p; overexpression causes a cell cycle delay; null mutant displays elevated frequency of mitochondrial genome loss

Micrographs

ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.1 0.1 0.12 0 0 0 0 0.05 0.06
Bud 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Neck 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Site 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cell Periphery 0 0 0.05 0 0 0 0 0 0 0 0 0 0 0 0.08 0.05 0.07 0 0 0 0 0 0
Cytoplasm 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.05 0.09 0.1 0 0 0 0 0 0
Endoplasmic Reticulum 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.05 0 0 0 0 0 0
Endosome 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Golgi 0 0.08 0 0 0 0 0 0 0 0 0 0 0 0.14 0.46 0.48 0.35 0.08 0.09 0.07 0.11 0.14 0.12
Mitochondria 0.92 0.89 0.94 0.97 0.88 0.91 0.83 0.89 0.91 0.94 0.93 0.93 0.93 0.92 0.06 0.07 0.07 0.84 0.7 0.76 0.72 0.64 0.67
Nucleus 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nuclear Periphery 0 0 0 0 0 0.08 0.07 0.1 0.1 0.06 0.11 0 0.05 0 0 0 0 0 0 0 0 0 0
Nucleolus 0.08 0.06 0.08 0 0.12 0.2 0.22 0.13 0.15 0.11 0.13 0 0.06 0 0.14 0.08 0.08 0 0 0 0 0 0
Peroxisomes 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.06 0 0.1 0 0 0 0 0 0
SpindlePole 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Vac/Vac Membrane 0.15 0.09 0.12 0 0 0 0 0 0 0 0 0.11 0.05 0.07 0.13 0.18 0.13 0 0.05 0.05 0.07 0.05 0.07
ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 1 2 1 0 0 1 1 0 1 1 1 2 3 6 15 10 12 5 4 1 2 10 17
Bud 1 2 1 6 4 7 10 7 10 15 5 1 1 1 4 3 3 0 0 0 0 2 4
Bud Neck 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Site 1 0 1 0 1 0 1 1 5 3 7 0 0 0 1 0 0
Cell Periphery 5 1 7 2 1 1 2 2 2 1 3 1 3 8 12 5 7 0 0 0 0 0 0
Cytoplasm 0 3 1 2 12 5 8 11 8 0 2 1 3 4 7 9 10 0 3 0 0 0 0
Endoplasmic Reticulum 5 0 2 1 3 4 2 3 2 2 1 0 0 0 3 3 5 0 0 0 0 1 0
Endosome 1 0 0 0 5 0 6 0 0 1 0 1 1 1 5 0 0 2 0 4 2 5 4
Golgi 6 8 2 0 12 4 4 5 3 1 1 5 15 61 68 46 34 25 9 9 11 32 34
Mitochondria 286 93 121 226 281 359 667 393 497 343 366 206 327 410 9 7 7 268 74 105 77 146 192
Nucleus 1 0 1 0 0 2 3 1 1 1 1 1 1 0 4 1 1 0 0 1 0 2 0
Nuclear Periphery 8 3 4 3 10 31 57 44 54 23 43 7 16 9 1 1 2 1 1 2 1 1 0
Nucleolus 25 6 10 10 37 77 177 58 82 40 53 8 20 14 20 8 8 2 2 0 0 2 2
Peroxisomes 0 0 1 1 2 3 4 3 2 4 2 2 14 4 9 1 10 4 1 3 1 8 7
SpindlePole 0 0 0 0 1 0 6 2 3 0 1 1 0 0 4 0 2 0 0 1 0 0 1
Vac/Vac Membrane 48 9 16 7 11 15 20 11 12 11 5 24 19 33 19 17 13 6 5 7 7 12 18
Unique Cell Count 310 104 129 232 318 394 800 442 548 363 394 221 350 446 148 96 97 318 106 139 107 229 286
Labelled Cell Count 388 127 168 258 380 509 969 541 682 446 491 260 423 551 181 111 114 318 106 139 107 229 286


Mitochondria

(Huh et al. Nature 2003 425:686)
Screen WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 AF100 AF140 AF180
Mean Cell GFP Intensity (1e-4) 16.6 19.4 10.2 12.8 15.8 14.0 13.9 13.1 13.8 11.9 12.0 16.8 17.5 17.7 21.7 21.4 21.1 14.9 17.9 18.9
Std Deviation (1e-4) 4.0 4.3 3.1 3.0 4.4 4.1 3.9 4.1 4.4 3.6 3.6 3.9 4.3 3.9 6.5 7.2 6.8 3.7 5.2 5.2
Intensity Change (Log2) 0.33 0.64 0.45 0.44 0.36 0.44 0.23 0.24 0.72 0.78 0.79 1.09 1.07 1.05 0.55 0.81 0.89


Localization RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3
Cortical Patches 0 0 0 0 0 0 0 0 0 0 0 3.3 0 3.7
Bud 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Neck 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Site 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cell Periphery 0 0 0 0 0 0 0 0 0 0 0 0.9 -0.1 0.6
Cytoplasm 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Endoplasmic Reticulum 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Endosome 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Golgi 0 0 0 0 0 0 0 0 0 0 3.9 8.5 8.4 6.8
Mitochondria 1.7 -1.7 -1.0 -3.1 -1.6 -1.1 0.3 -0.4 -0.2 -0.1 -0.7 -14.6 -13.0 -13.0
Nucleus 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nuclear Periphery 0 0 1.9 1.7 2.5 2.5 1.4 2.7 0 0.7 0 0 0 0
Nucleolus -1.4 1.2 3.1 3.8 1.7 2.2 1.1 1.7 -1.7 -0.8 -2.3 1.5 0.2 0.1
Peroxisomes 0 0 0 0 0 0 0 0 0 0 0 0 0 0
SpindlePole 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Vacuole -3.5 -3.6 -3.6 0 -4.7 -5.2 -4.0 -5.6 -0.4 -2.6 -1.8 0.1 1.1 0.2

Images

Circle plot not available

Protein Concentration and Protein Localization Data

R1 R2 R3
G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase
Concentration 10.7276 12.4248 11.3143 9.6128 8.9586 12.0246 11.6817 12.1398 11.5603 10.7819 12.7034 11.4617 13.0953 14.0657 13.8744 13.0724 12.9791 13.4423
Actin 0.0179 0.0105 0.0032 0.0023 0.0391 0.0021 0.0086 0.0075 0.0109 0.0083 0.0006 0.001 0.0126 0.0039 0.002 0.0003 0.0006 0.0004
Bud 0.0003 0.0001 0.0002 0.0001 0.0002 0 0.0005 0.0008 0.0003 0.001 0.0003 0.0002 0.0005 0.0002 0.0004 0.0001 0.0001 0
Bud Neck 0.0007 0.0017 0.0007 0.0003 0.0006 0.0001 0.0002 0.0003 0.0007 0.0001 0.0001 0.0004 0.0002 0.0002 0.0005 0 0.0001 0
Bud Periphery 0.0005 0.0002 0.0004 0.0002 0.0003 0.0001 0.0007 0.0015 0.0006 0.0014 0.0005 0.0004 0.0013 0.0004 0.0009 0.0004 0.0002 0.0001
Bud Site 0.0043 0.0004 0.0076 0.0006 0.001 0.0001 0.0039 0.0027 0.0054 0.0022 0.0023 0.0002 0.0014 0.004 0.0011 0.0001 0.0003 0
Cell Periphery 0.0005 0.0003 0.0001 0.0001 0.0001 0.0001 0.0003 0.0005 0.0007 0.0002 0.0001 0.0001 0.0005 0.0004 0.0004 0.0003 0.0001 0.0001
Cytoplasm 0.0002 0.0001 0.005 0.0004 0.0001 0 0.0008 0 0.0016 0.0005 0.0012 0.0001 0.0014 0 0.0001 0 0.0031 0
Cytoplasmic Foci 0.0094 0.0048 0.0076 0.0438 0.0072 0.001 0.0096 0.0026 0.0079 0.0113 0.0123 0.0032 0.0049 0.0021 0.0037 0.0193 0.0019 0.0004
Eisosomes 0.0004 0.0002 0.0001 0.0001 0.0003 0.0001 0.0005 0.0002 0.0005 0.0002 0.0001 0.0001 0.0007 0.0001 0.0001 0.0001 0.0001 0.0001
Endoplasmic Reticulum 0.0001 0.0001 0.0005 0.0001 0.0001 0 0.0014 0 0.0014 0.0006 0.0008 0.0002 0.0005 0.0001 0.0001 0 0.0006 0
Endosome 0.011 0.0066 0.0087 0.0049 0.0057 0.0058 0.0106 0.0037 0.0096 0.0067 0.0264 0.0118 0.0123 0.0085 0.0087 0.0026 0.0119 0.0021
Golgi 0.0108 0.0207 0.0075 0.008 0.0195 0.0341 0.0061 0.0101 0.0143 0.0052 0.0053 0.0158 0.0114 0.014 0.0086 0.0023 0.0026 0.0042
Lipid Particles 0.0435 0.0134 0.0191 0.0249 0.0103 0.0018 0.0105 0.0069 0.0111 0.0218 0.0055 0.0173 0.0222 0.0207 0.0051 0.0065 0.002 0.0114
Mitochondria 0.8658 0.9248 0.9209 0.8654 0.8834 0.9446 0.9105 0.9399 0.9108 0.915 0.935 0.9384 0.879 0.905 0.9387 0.9479 0.9538 0.9699
None 0.0002 0 0.003 0.001 0.0001 0 0.0012 0 0.0036 0.0008 0.0002 0 0.0038 0 0 0 0.0008 0
Nuclear Periphery 0.0002 0 0.0003 0.0001 0.0001 0.0001 0.0048 0.0001 0.0005 0.0021 0.0005 0.0004 0.0026 0.0001 0.0001 0 0.0042 0.0001
Nucleolus 0.0012 0.0002 0.0005 0.0006 0.0001 0 0.0007 0.0026 0.0013 0.0008 0.0002 0.0003 0.0078 0.0059 0.0007 0.0001 0.0006 0.0001
Nucleus 0.0003 0.0001 0.0002 0.0001 0.0001 0 0.0019 0.0005 0.0005 0.0008 0.0003 0.0002 0.0018 0.0003 0.0003 0.0001 0.005 0
Peroxisomes 0.0161 0.005 0.0109 0.0428 0.0307 0.0018 0.0095 0.0053 0.0066 0.0098 0.0015 0.002 0.0099 0.0077 0.0061 0.0045 0.0017 0.0034
Punctate Nuclear 0.0006 0.0001 0.0004 0.001 0.0001 0 0.0008 0 0.0007 0.0017 0.0005 0.0004 0.0016 0 0 0 0.0018 0
Vacuole 0.0052 0.0026 0.0015 0.0009 0.0003 0.0008 0.0072 0.0056 0.0048 0.0029 0.0031 0.0027 0.011 0.0063 0.0116 0.005 0.0017 0.0007
Vacuole Periphery 0.0106 0.0085 0.0018 0.0024 0.0005 0.0075 0.0096 0.009 0.0063 0.0065 0.0035 0.0047 0.0125 0.0201 0.011 0.0105 0.0066 0.0069

Sequencing Data

R1 R2
G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Post-START S/G2 Metaphase Anaphase Telophase
Gene Expression 55.1702 59.1826 82.9525 65.9773 65.1723 78.4209 84.7725 74.0439 89.7937 74.6969
Translational Efficiency 2.4144 2.5332 1.6047 2.4768 1.9887 2.2331 1.7432 2.4618 1.9653 2.0794

Hit Data

Dataset Hit
Protein Concentration
Protein Localization
Gene Expression
Translational Efficiency

Micrographs

Cell Count

R1 R2 R1 & R2
WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14
1212 786 215 1182 1449 1978 1742 1516 2661 2764 1957 2698

Protein Abundance

R1 R2 R1 & R2
WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14
Mean 1081.37 1413.07 1771.58 1786.79 1027.57 1316.05 1465.97 1741.76 1052.07 1343.64 1499.54 1761.49
Standard Deviation 222.48 313.78 337.17 433.28 289.58 273.14 337.46 354.95 262.53 288.63 350.70 391.84
Intensity Change Log 2 0.385973 0.712176 0.724510 0.356978 0.512619 0.761309 0.371918 0.618384 0.742557

Localization Score (DeepLoc)

R1 R2 R1 & R2
WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14
Actin 0.001409 0.004772 0.004828 0.006063 0.004700 0.001943 0.003503 0.014977 0.003201 0.002747 0.003649 0.011072
Bud Neck 0.001326 0.001415 0.024584 0.002492 0.003390 0.000916 0.001002 0.001570 0.002450 0.001058 0.003593 0.001974
Bud Site 0.003921 0.003338 0.015940 0.013078 0.006969 0.001512 0.000718 0.004441 0.005581 0.002031 0.002390 0.008225
Cell Periphery 0.000324 0.000092 0.000371 0.001008 0.001993 0.000109 0.000147 0.006972 0.001233 0.000104 0.000172 0.004359
Cytoplasm 0.000420 0.000604 0.000808 0.009958 0.000594 0.000294 0.000149 0.000320 0.000515 0.000382 0.000222 0.004542
Cytoplasmic Foci 0.011201 0.019632 0.052865 0.008970 0.010533 0.011968 0.007980 0.006260 0.010838 0.014148 0.012912 0.007447
Eisosomes 0.000352 0.000416 0.000553 0.000580 0.001243 0.000234 0.000710 0.012648 0.000837 0.000286 0.000693 0.007361
Endoplasmic Reticulum 0.000160 0.000186 0.000485 0.000918 0.000452 0.000122 0.000083 0.000282 0.000319 0.000140 0.000127 0.000561
Endosome 0.003649 0.005624 0.017048 0.003292 0.005239 0.004697 0.001456 0.002177 0.004514 0.004961 0.003169 0.002665
Golgi 0.010594 0.027387 0.032780 0.019686 0.008462 0.016475 0.008230 0.015083 0.009433 0.019578 0.010927 0.017100
Lipid Particles 0.004645 0.006557 0.009520 0.003229 0.008211 0.005289 0.002220 0.001738 0.006587 0.005649 0.003022 0.002391
Mitochondria 0.931411* 0.897584* 0.717026* 0.894120* 0.911656* 0.935055* 0.955653* 0.909427* 0.920654* 0.924399* 0.929437* 0.902721*
Mitotic Spindle 0.000668 0.002793 0.017422 0.004727 0.000305 0.001308 0.000399 0.001085 0.000471 0.001730 0.002269 0.002681
None 0.001772 0.001509 0.002269 0.002348 0.002684 0.001091 0.001772 0.001586 0.002269 0.001210 0.001827 0.001920
Nuclear Periphery 0.000168 0.000469 0.007207 0.000487 0.000167 0.000147 0.000248 0.000278 0.000167 0.000238 0.001012 0.000369
Nuclear Periphery Foci 0.000349 0.000288 0.003837 0.000459 0.000407 0.000175 0.000149 0.000149 0.000380 0.000207 0.000554 0.000285
Nucleolus 0.000741 0.000362 0.003441 0.000384 0.002129 0.000383 0.000348 0.000237 0.001497 0.000377 0.000688 0.000301
Nucleus 0.000147 0.000091 0.000734 0.001125 0.000470 0.000136 0.000046 0.000086 0.000323 0.000124 0.000121 0.000541
Peroxisomes 0.010841 0.016348 0.026526 0.005178 0.014454 0.009162 0.006599 0.007436 0.012808 0.011206 0.008788 0.006447
Vacuole 0.007750 0.004900 0.032954 0.009370 0.009681 0.005199 0.003600 0.005123 0.008801 0.005114 0.006825 0.006984
Vacuole Periphery 0.008152 0.005634 0.028804 0.012528 0.006261 0.003782 0.004987 0.008126 0.007122 0.004309 0.007604 0.010054

Localization Changes (T-score)

R1 R2 R1 & R2
UBP2_WT UBP14_WT UBP2UBP14_WT UBP2UBP14_UBP2 UBP2UBP14_UBP14 UBP2_WT UBP14_WT UBP2UBP14_WT UBP2UBP14_UBP2 UBP2UBP14_UBP14 UBP2_WT UBP14_WT UBP2UBP14_WT UBP2UBP14_UBP2 UBP2UBP14_UBP14
Actin -2.67 -3.19 -4.60 -0.82 -0.87 2.92 1.13 -4.57 -6.22 -5.33 0.69 -0.59 -5.88 -6.36 -5.48
Bud Neck -0.24 -4.07 -3.06 -2.65 3.83 4.68 4.59 3.31 -2.35 -2.18 4.21 -1.60 1.08 -3.94 2.23
Bud Site 0.34 -2.39 -4.50 -4.77 0.07 3.78 4.51 1.51 -2.88 -3.98 3.42 2.92 -2.57 -5.97 -5.47
Cell Periphery 2.98 -0.49 -1.92 -2.59 -1.80 3.57 3.50 -3.17 -4.64 -4.62 3.89 3.64 -3.51 -5.04 -4.95
Cytoplasm -0.81 -1.77 -6.02 -5.93 -5.84 2.18 3.62 1.90 -0.47 -3.15 1.17 3.28 -5.82 -5.95 -6.11
Cytoplasmic Foci -3.42 -5.80 0.75 4.01 5.99 -1.05 1.86 3.31 4.41 1.28 -2.72 -1.46 2.75 5.35 3.61
Eisosomes -1.08 -2.36 -3.09 -2.22 -0.22 10.35 4.47 -5.33 -5.81 -5.58 9.38 1.70 -5.40 -5.86 -5.52
Endoplasmic Reticulum -0.77 -2.72 -1.45 -1.40 -0.82 5.62 6.33 2.33 -3.11 -3.92 5.05 5.10 -1.04 -1.81 -1.86
Endosome -2.08 -4.37 0.40 2.30 4.46 0.53 4.25 3.51 3.75 -1.55 -0.64 1.94 3.10 3.95 0.86
Golgi -4.95 -3.48 -3.27 2.07 2.02 -4.58 0.16 -3.51 0.64 -3.51 -6.34 -1.00 -4.75 1.35 -3.34
Lipid Particles -1.23 -1.96 1.06 2.12 2.53 2.15 4.88 5.39 4.55 0.90 0.95 4.04 4.76 4.26 0.98
Mitochondria 3.64 9.44 5.50 1.47 -7.06 -3.54 -7.11 0.29 3.66 7.01 -0.73 -1.59 3.95 4.62 5.20
Mitotic Spindle -1.56 -3.32 -4.57 -1.75 2.26 -2.20 -0.87 -2.29 0.38 -2.02 -2.43 -3.05 -5.05 -1.99 -1.15
None 1.41 -1.87 -2.72 -4.15 -0.29 10.16 5.16 6.56 -4.68 1.37 9.13 3.19 2.65 -6.94 -0.73
Nuclear Periphery -1.76 -3.02 -4.79 -0.18 2.88 0.44 -1.22 -1.80 -2.75 -0.45 -1.28 -3.18 -4.53 -2.20 2.38
Nuclear Periphery Foci 0.57 -3.79 -0.91 -1.42 3.62 3.16 3.48 3.46 0.70 -0.06 2.89 -1.43 1.03 -1.47 2.10
Nucleolus 1.95 -3.17 1.81 -0.28 3.64 3.68 3.79 3.90 0.83 0.68 4.05 2.87 4.26 0.55 2.98
Nucleus 1.26 -1.75 -3.44 -3.56 -1.90 2.34 3.13 2.50 0.39 -1.15 2.38 2.46 -2.28 -3.35 -3.39
Peroxisomes -1.82 -2.73 2.95 4.25 3.85 2.75 4.24 3.43 1.04 -0.53 1.03 2.57 4.47 3.61 1.81
Vacuole 1.91 -5.91 -1.82 -3.50 4.91 3.03 4.11 2.90 0.03 -1.33 3.48 1.62 0.75 -2.63 -0.87
Vacuole Periphery 1.78 -5.21 -2.45 -3.88 4.00 3.12 1.34 -1.68 -4.50 -2.86 3.94 -0.51 -2.91 -6.37 -2.21
Standard name
Human Ortholog
Description Protein with rhodanese activity; contains a rhodanese-like domain similar to Rdl1p, Uba4p, Tum1p, and Ych1p; overexpression causes a cell cycle delay; null mutant displays elevated frequency of mitochondrial genome loss
Localization
Cell Percentages mitochondrion (98%)
Cell Cycle Regulation No
Subcompartmental Group mito-3

Rdl2

Rdl2


Nearest neighbours ( genes)

correlation threshold

0.6

1.0

0.80


Biological Process (Gene Ontology)

Molecular Function (Gene Ontology)

Cellular Component (Gene Ontology)


Endocytosis
Temp Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Vph1-GFP)
37℃
RT
Cell Cycle Omics

CYCLoPs (Rdl2-GFP)
Gene / Allele Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Sac6-tdTomato)
Gene Images
Gene Images
Images are not yet available
Images are not yet available