Standard name
Human Ortholog
Description Subunit b of the stator stalk of mitochondrial F1F0 ATP synthase; ATP synthase is a large, evolutionarily conserved enzyme complex required for ATP synthesis; contributes to the oligomerization of the complex, which in turn determines the shape of inner membrane cristae; phosphorylated

Micrographs

ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0 0 0 0 0 0 0 0 0 0 0 0 0 0.17 0.17 0.12 0.09 0.2 0.13 0.16 0.19 0.17
Bud 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.06 0 0 0 0 0
Bud Neck 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.09 0 0 0 0 0
Bud Site 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cell Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cytoplasm 0 0 0 0.06 0 0 0.06 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Endoplasmic Reticulum 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.06 0 0 0 0 0 0 0
Endosome 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Golgi 0 0 0 0 0 0 0.1 0 0 0 0.06 0.07 0.1 0.76 0.79 0.8 0.23 0.25 0.19 0.3 0.24 0.33
Mitochondria 0.98 0.95 0.82 0.85 0.91 0.79 0.63 0.9 0.88 0.85 0.82 0.76 0.75 0.08 0 0.06 0.27 0.41 0.47 0.27 0.3 0.3
Nucleus 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nuclear Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nucleolus 0.12 0.2 0.18 0.16 0.24 0.35 0.26 0.28 0.24 0.31 0.15 0.19 0.2 0.06 0.08 0 0 0 0 0 0.05 0
Peroxisomes 0 0.07 0.06 0.07 0 0.05 0 0 0 0 0.06 0.12 0.08 0 0 0 0 0 0.15 0.19 0.16 0.12
SpindlePole 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Vac/Vac Membrane 0.05 0 0 0 0 0 0.08 0 0 0 0 0 0.07 0.1 0 0.1 0 0 0 0 0 0
ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 2 0 0 0 2 0 1 1 0 1 1 8 2 12 8 6 0 23 9 15 31 37
Bud 0 0 1 0 1 1 0 0 1 3 1 1 0 0 0 0 0 0 0 0 0 0
Bud Neck 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
Bud Site 0 0 0 0 2 1 1 0 1 1 0 0 0 0 0 0
Cell Periphery 2 0 1 0 1 0 4 0 0 0 0 0 0 3 2 1 0 0 0 0 0 0
Cytoplasm 0 0 0 10 2 5 17 0 3 5 0 4 1 0 1 0 0 0 0 0 0 2
Endoplasmic Reticulum 0 0 0 0 0 0 1 0 0 1 0 1 1 3 3 2 0 0 0 0 0 1
Endosome 0 0 1 0 0 0 1 0 0 0 2 1 1 0 0 0 0 0 0 2 1 2
Golgi 2 0 1 1 2 7 28 2 2 1 8 13 18 55 38 40 2 30 13 28 37 73
Mitochondria 107 39 93 138 176 222 186 234 197 224 104 141 129 6 1 3 2 50 34 26 47 68
Nucleus 0 0 0 0 3 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
Nuclear Periphery 0 0 0 1 0 3 0 0 3 1 0 0 0 0 0 0 0 1 0 0 0 0
Nucleolus 13 8 21 26 46 99 76 72 53 83 19 36 35 4 4 2 0 2 1 1 8 2
Peroxisomes 0 3 7 11 6 14 8 6 8 8 8 22 14 1 0 0 0 4 10 18 25 27
SpindlePole 0 0 2 1 2 2 3 0 3 4 1 1 4 0 0 0 0 0 0 1 0 1
Vac/Vac Membrane 5 0 4 0 1 8 22 7 3 2 4 7 12 7 2 5 0 3 0 1 3 3
Unique Cell Count 109 41 114 163 194 282 293 261 225 265 127 186 173 72 48 50 11 122 73 96 161 226
Labelled Cell Count 131 50 131 188 244 363 349 322 275 334 148 235 217 91 59 59 11 122 73 96 161 226


Mitochondria

(Huh et al. Nature 2003 425:686)
Screen WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 AF100 AF140 AF180
Mean Cell GFP Intensity (1e-4) 53.6 32.6 32.6 30.9 30.5 32.0 38.8 35.4 33.7 31.0 42.4 42.5 44.5 57.1 57.9 59.7 53.8 47.6 50.6
Std Deviation (1e-4) 20.5 14.6 14.8 12.8 11.4 15.8 19.7 17.4 14.1 13.3 18.8 20.6 21.5 16.6 19.6 17.9 26.3 22.9 23.3
Intensity Change (Log2) 0.0 -0.08 -0.1 -0.03 0.25 0.12 0.05 -0.07 0.38 0.38 0.45 0.81 0.83 0.87 0.72 0.55 0.63


Localization RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3
Cortical Patches 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Neck 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Site 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cell Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cytoplasm 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Endoplasmic Reticulum 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Endosome 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Golgi 0 0 0 0 0 0 0 0 0 0 0 7.8 7.5 7.7
Mitochondria -2.1 -1.8 -0.9 -2.5 -4.0 -1.1 -1.4 -1.8 -2.1 -2.8 -2.9 -9.1 -8.8 -8.5
Nucleus 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nuclear Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nucleolus -0.2 -0.5 0.6 2.0 0.9 1.1 0.6 1.5 -0.7 0 0.1 0 -1.5 0
Peroxisomes 0 0 0 0 0 0 0 0 0 0 0 0 0 0
SpindlePole 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Vacuole 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Images

Circle plot not available

Protein Concentration and Protein Localization Data

R1 R2 R3
G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase
Concentration 47.6793 64.1152 59.411 52.6267 51.9322 56.9788 48.4062 65.7019 63.0142 60.6519 53.5115 59.1685 54.9948 66.4159 60.4981 53.1956 55.7368 59.2592
Actin 0.0082 0.015 0.0113 0.01 0.0087 0.0041 0.015 0.0035 0.0024 0.0004 0.0067 0.0017 0.0059 0.0016 0.0044 0.0002 0.0006 0.0005
Bud 0.0003 0.0001 0.0001 0.0002 0 0 0.0002 0 0.0001 0 0.0034 0 0 0 0.0001 0 0 0
Bud Neck 0.0007 0.0002 0.0001 0.0001 0.0003 0 0.0004 0 0.0001 0 0.0004 0 0.0028 0 0 0 0 0
Bud Periphery 0.0005 0.0001 0.0002 0.0002 0.0001 0 0.0003 0.0001 0.0001 0 0.0035 0 0.0001 0 0.0001 0 0 0
Bud Site 0.0039 0.0002 0.0003 0.001 0.0001 0.0001 0.0013 0.0001 0.0014 0 0.0062 0.0001 0.0003 0 0.0003 0 0 0
Cell Periphery 0.0005 0.0008 0.0005 0.0002 0.0004 0.0002 0.0004 0.0002 0.0001 0 0.0002 0.0001 0.0002 0.0001 0.0002 0 0 0.0001
Cytoplasm 0.0006 0 0.0003 0.0025 0.0002 0 0.0006 0 0.0001 0 0.0103 0.0011 0.0003 0 0.0001 0 0 0
Cytoplasmic Foci 0.009 0.001 0.0034 0.0012 0.0135 0.0003 0.0284 0.0003 0.0074 0.0001 0.0381 0.0114 0.0081 0.0002 0.0118 0 0.0001 0.0107
Eisosomes 0.0064 0.0044 0.0046 0.011 0.0048 0.005 0.0017 0.0011 0.0017 0.0002 0.001 0.0007 0.0014 0.0009 0.001 0.0003 0.0007 0.0004
Endoplasmic Reticulum 0.0005 0 0.0001 0.0048 0.0012 0 0.0003 0 0 0 0.0033 0.0001 0.0002 0 0 0 0 0
Endosome 0.0014 0.001 0.0009 0.0058 0.0022 0.0002 0.006 0.0004 0.0048 0 0.0356 0.0048 0.0016 0.0001 0.0005 0 0 0.0001
Golgi 0.0019 0.0098 0.0092 0.0043 0.0046 0.0029 0.0045 0.0006 0.0008 0.0001 0.0142 0.0021 0.0023 0.001 0.0026 0.0001 0.0001 0.0006
Lipid Particles 0.0354 0.0491 0.0313 0.0302 0.0286 0.0158 0.0485 0.0089 0.0055 0.0007 0.0209 0.0136 0.019 0.0065 0.0158 0.0028 0.004 0.0073
Mitochondria 0.8882 0.8727 0.9095 0.9133 0.9004 0.9537 0.8413 0.9593 0.9576 0.9763 0.8045 0.9432 0.927 0.968 0.9383 0.9917 0.9855 0.9698
None 0.0012 0 0.0011 0.0003 0.0033 0 0.0019 0 0.0001 0 0.024 0.0004 0.0008 0 0.0001 0 0 0
Nuclear Periphery 0.0012 0.0001 0.0003 0.0041 0.0028 0 0.001 0 0.0001 0 0.0044 0.0002 0.0009 0 0.0001 0 0 0
Nucleolus 0.012 0.0025 0.0037 0.0002 0.0048 0.0017 0.0056 0.0005 0.0032 0 0.0008 0.0049 0.0062 0.0053 0.0017 0 0.0001 0.0009
Nucleus 0.0009 0.0002 0.0005 0.0011 0.0005 0.0001 0.0005 0.0001 0.0001 0 0.0035 0.0003 0.0005 0.0002 0.0003 0 0 0
Peroxisomes 0.011 0.0079 0.0055 0.0036 0.015 0.0064 0.0278 0.0078 0.008 0.0214 0.0115 0.009 0.0129 0.0119 0.0137 0.0025 0.0081 0.0048
Punctate Nuclear 0.0015 0 0.0005 0.0004 0.0007 0 0.0025 0 0.001 0 0.0016 0.0011 0.0053 0 0.0005 0 0 0.0001
Vacuole 0.0019 0.0032 0.0018 0.0006 0.0005 0.0003 0.0017 0.0026 0.0006 0.0001 0.0023 0.0004 0.0004 0.0005 0.0011 0 0.0001 0.0002
Vacuole Periphery 0.0128 0.0315 0.0146 0.005 0.0072 0.0091 0.0102 0.0144 0.0048 0.0007 0.0037 0.0047 0.0039 0.0037 0.0073 0.0023 0.0006 0.0046

Sequencing Data

R1 R2
G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Post-START S/G2 Metaphase Anaphase Telophase
Gene Expression 92.3257 93.9406 88.6287 113.4276 93.4277 129.0344 99.0539 121.3459 113.0588 118.4423
Translational Efficiency 1.6224 1.363 1.3549 1.294 1.5534 1.2459 1.3923 1.1792 1.3345 1.1877

Hit Data

Dataset Hit
Protein Concentration
Protein Localization
Gene Expression
Translational Efficiency
Standard name
Human Ortholog
Description Subunit b of the stator stalk of mitochondrial F1F0 ATP synthase; ATP synthase is a large, evolutionarily conserved enzyme complex required for ATP synthesis; contributes to the oligomerization of the complex, which in turn determines the shape of inner membrane cristae; phosphorylated
Localization
Cell Percentages mitochondrion (92%)
Cell Cycle Regulation No
Subcompartmental Group mito-3

Atp4

Atp4


Nearest neighbours ( genes)

correlation threshold

0.6

1.0

0.80


Biological Process (Gene Ontology)

Molecular Function (Gene Ontology)

Cellular Component (Gene Ontology)


Endocytosis
Temp Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Vph1-GFP)
37℃
RT
Cell Cycle Omics

CYCLoPs (Atp4-GFP)
Gene / Allele Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Sac6-tdTomato)
Gene Images
Gene Images
Images are not yet available
Images are not yet available