Standard name | |
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Human Ortholog | |
Description | Small subunit of the heterodimeric cap binding complex with Sto1p; interacts with Npl3p, possibly to package mRNA for export from the nucleus; may have a role in telomere maintenance; contains an RNA-binding motif |
ensLOC | DeepLoc | |||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Localization | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | WT1 | WT2 | WT3 | AF100 | AF140 | AF180 |
Cortical Patches | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 2 | 0 |
Bud | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 5 | 3 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 1 | 1 | 4 | 6 | 0 | 0 | 2 | 0 | 0 | 0 | – | – | – | – | – | – |
Cell Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 1 | 6 | 5 | 3 | 7 | 5 | 14 | – | 7 | 10 | 6 | 6 | 8 | 26 | 39 | 13 | 9 | 14 | 0 | 0 | 1 | 0 | 2 | 0 |
Endoplasmic Reticulum | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 3 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Endosome | 0 | 2 | 0 | 1 | 0 | 1 | 0 | – | 0 | 0 | 0 | 0 | 0 | 5 | 5 | 1 | 1 | 0 | 0 | 1 | 0 | 0 | 1 | 0 |
Golgi | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 3 | 0 | 0 | 0 | 0 | 1 |
Mitochondria | 3 | 4 | 0 | 1 | 1 | 1 | 0 | – | 5 | 7 | 5 | 10 | 1 | 1 | 2 | 4 | 6 | 2 | 0 | 0 | 0 | 0 | 1 | 2 |
Nucleus | 179 | 144 | 34 | 85 | 127 | 72 | 167 | – | 89 | 115 | 131 | 156 | 122 | 306 | 323 | 282 | 196 | 188 | 168 | 135 | 46 | 142 | 234 | 160 |
Nuclear Periphery | 0 | 0 | 0 | 0 | 0 | 1 | 2 | – | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleolus | 86 | 46 | 7 | 33 | 25 | 44 | 71 | – | 58 | 75 | 72 | 108 | 59 | 98 | 142 | 80 | 55 | 44 | 41 | 22 | 19 | 69 | 120 | 90 |
Peroxisomes | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 2 | 7 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 1 | 0 | 5 | 6 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 4 | 3 |
Vac/Vac Membrane | 1 | 2 | 0 | 0 | 3 | 0 | 1 | – | 2 | 1 | 0 | 0 | 1 | 0 | 1 | 8 | 5 | 5 | 2 | 4 | 0 | 2 | 12 | 21 |
Unique Cell Count | 206 | 163 | 40 | 100 | 146 | 95 | 212 | 118 | 161 | 164 | 213 | 153 | 351 | 416 | 342 | 242 | 226 | 220 | 166 | 69 | 217 | 394 | 288 | |
Labelled Cell Count | 270 | 204 | 46 | 123 | 163 | 124 | 255 | 163 | 211 | 218 | 287 | 191 | 443 | 527 | 392 | 275 | 256 | 220 | 166 | 69 | 217 | 394 | 288 |
Screen | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | AF100 | AF140 | AF180 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Mean Cell GFP Intensity (1e-4) | 20.0 | 21.0 | 18.0 | 15.9 | 15.9 | 10.2 | 14.3 | – | 12.3 | 12.2 | 12.2 | 11.7 | 21.0 | 17.9 | 21.7 | 20.1 | 21.2 | 22.1 | 20.0 | 21.6 | 21.4 |
Std Deviation (1e-4) | 5.0 | 7.2 | 6.3 | 6.1 | 4.2 | 3.3 | 5.0 | – | 3.9 | 4.1 | 5.0 | 3.8 | 7.1 | 7.2 | 9.5 | 8.1 | 8.1 | 7.6 | 6.7 | 7.1 | 7.4 |
Intensity Change (Log2) | – | – | – | -0.18 | -0.18 | -0.82 | -0.33 | – | -0.56 | -0.56 | -0.56 | -0.62 | 0.22 | -0.01 | 0.27 | 0.16 | 0.23 | 0.29 | 0.15 | 0.26 | 0.25 |
Localization | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Cortical Patches | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Neck | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cell Periphery | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Endoplasmic Reticulum | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Endosome | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Golgi | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Mitochondria | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleus | 0 | 0.3 | -1.2 | -0.9 | – | -1.3 | -1.8 | -0.7 | -1.6 | -0.8 | 0.4 | -1.1 | -0.4 | -0.6 | -0.3 |
Nuclear Periphery | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleolus | 1.8 | -0.1 | 3.2 | 2.0 | – | 3.5 | 3.3 | 3.1 | 3.9 | 2.5 | 1.4 | 2.1 | 0.8 | 0.7 | 0.3 |
Peroxisomes | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Vacuole | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
R1 | R2 | R3 | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Concentration | 12.2613 | 13.6549 | 12.1403 | 11.8711 | 12.3695 | 12.125 | 17.0886 | 17.4024 | 16.8407 | 13.9573 | 13.5022 | 16.2509 | 18.6563 | 20.3956 | 18.6559 | 18.7905 | 15.6459 | 17.4641 |
Actin | 0.0022 | 0.001 | 0.0072 | 0.0022 | 0.0001 | 0.0002 | 0.002 | 0.0095 | 0.0015 | 0.0331 | 0.0222 | 0.0013 | 0.0122 | 0 | 0.0004 | 0 | 0.0156 | 0.0011 |
Bud | 0.0002 | 0 | 0.0001 | 0.0001 | 0.0001 | 0.0001 | 0.0002 | 0.0001 | 0.0003 | 0.0008 | 0.0012 | 0.0001 | 0.0002 | 0 | 0.0001 | 0 | 0.0031 | 0.0001 |
Bud Neck | 0.0006 | 0.0001 | 0.0001 | 0.0001 | 0.0003 | 0.0003 | 0.0013 | 0.0001 | 0.0005 | 0.0039 | 0.0003 | 0.0004 | 0.0002 | 0 | 0 | 0 | 0.0005 | 0.0002 |
Bud Periphery | 0.0002 | 0 | 0.0001 | 0.0001 | 0.0002 | 0.0003 | 0.0002 | 0 | 0.0004 | 0.0014 | 0.004 | 0.0002 | 0.0003 | 0 | 0.0001 | 0 | 0.009 | 0.0001 |
Bud Site | 0.001 | 0.0001 | 0.0003 | 0.0004 | 0.0001 | 0.0002 | 0.0052 | 0.0012 | 0.0008 | 0.0118 | 0.0012 | 0.0002 | 0.0008 | 0 | 0.0001 | 0 | 0.0116 | 0.0001 |
Cell Periphery | 0.0002 | 0 | 0.0001 | 0 | 0.0001 | 0.0001 | 0.0002 | 0 | 0.0003 | 0.0007 | 0.0005 | 0.0001 | 0.0002 | 0 | 0 | 0 | 0.0005 | 0 |
Cytoplasm | 0.0012 | 0 | 0.0003 | 0.0011 | 0 | 0.0003 | 0.0035 | 0 | 0.0044 | 0.0006 | 0.0002 | 0 | 0.0058 | 0 | 0.0012 | 0 | 0.0006 | 0.0001 |
Cytoplasmic Foci | 0.0215 | 0.0021 | 0.0045 | 0.0064 | 0.0018 | 0.0012 | 0.0047 | 0.0004 | 0.0065 | 0.0044 | 0.0029 | 0.0009 | 0.0173 | 0 | 0.0011 | 0 | 0.0077 | 0.0001 |
Eisosomes | 0.0001 | 0 | 0 | 0 | 0 | 0 | 0.0001 | 0 | 0.0001 | 0.0005 | 0.0007 | 0 | 0.0002 | 0 | 0 | 0 | 0.0001 | 0 |
Endoplasmic Reticulum | 0.0009 | 0 | 0.0001 | 0.0009 | 0 | 0.0001 | 0.0009 | 0 | 0.0017 | 0.0018 | 0.0035 | 0 | 0.0064 | 0 | 0.0003 | 0 | 0.0008 | 0.0006 |
Endosome | 0.01 | 0.0011 | 0.0052 | 0.0046 | 0.0003 | 0.0024 | 0.0051 | 0.0001 | 0.0032 | 0.0289 | 0.0037 | 0.0009 | 0.0083 | 0 | 0.004 | 0 | 0.0032 | 0.0029 |
Golgi | 0.0035 | 0.0013 | 0.001 | 0.0021 | 0.0004 | 0.0016 | 0.0012 | 0.0003 | 0.0008 | 0.0065 | 0.0031 | 0.0011 | 0.0019 | 0 | 0.0003 | 0 | 0.0022 | 0.0009 |
Lipid Particles | 0.0116 | 0.0034 | 0.0036 | 0.0051 | 0.0035 | 0.0012 | 0.0132 | 0.0001 | 0.0036 | 0.0092 | 0.0036 | 0.0009 | 0.0085 | 0 | 0.0003 | 0 | 0.017 | 0.0001 |
Mitochondria | 0.0039 | 0.0006 | 0.0023 | 0.0005 | 0.045 | 0.0021 | 0.0016 | 0.0005 | 0.0054 | 0.0132 | 0.0526 | 0.0124 | 0.0017 | 0.0001 | 0.0003 | 0.0001 | 0.008 | 0.003 |
None | 0.0044 | 0 | 0.0004 | 0.0013 | 0.0001 | 0.0008 | 0.0132 | 0 | 0.0085 | 0.0009 | 0.0008 | 0 | 0.0071 | 0 | 0.0005 | 0 | 0.0006 | 0.0001 |
Nuclear Periphery | 0.0077 | 0.0006 | 0.0013 | 0.0106 | 0.0004 | 0.0005 | 0.0087 | 0.0002 | 0.0052 | 0.0052 | 0.0045 | 0.0002 | 0.0081 | 0.0001 | 0.0006 | 0 | 0.002 | 0.001 |
Nucleolus | 0.1355 | 0.0555 | 0.0563 | 0.0188 | 0.5177 | 0.2456 | 0.0594 | 0.0303 | 0.0313 | 0.0402 | 0.3827 | 0.2076 | 0.0841 | 0.0298 | 0.0313 | 0.0258 | 0.2559 | 0.1413 |
Nucleus | 0.7758 | 0.9297 | 0.9078 | 0.9297 | 0.4235 | 0.741 | 0.8688 | 0.9565 | 0.9228 | 0.8205 | 0.5039 | 0.7721 | 0.8076 | 0.9699 | 0.9583 | 0.974 | 0.6328 | 0.8479 |
Peroxisomes | 0.0029 | 0.0034 | 0.0014 | 0.0075 | 0.0009 | 0.0002 | 0.0068 | 0.0006 | 0.0005 | 0.0057 | 0.0033 | 0.0008 | 0.008 | 0 | 0.0001 | 0 | 0.0222 | 0 |
Punctate Nuclear | 0.0134 | 0.0008 | 0.0039 | 0.0078 | 0.0044 | 0.0013 | 0.0019 | 0.0001 | 0.0009 | 0.0052 | 0.0007 | 0.0003 | 0.019 | 0 | 0.0007 | 0 | 0.0013 | 0.0001 |
Vacuole | 0.0014 | 0.0001 | 0.0018 | 0.0003 | 0.0004 | 0.0004 | 0.0011 | 0 | 0.0008 | 0.003 | 0.0015 | 0.0002 | 0.001 | 0 | 0.0002 | 0 | 0.0029 | 0.0001 |
Vacuole Periphery | 0.0017 | 0.0001 | 0.0024 | 0.0004 | 0.0006 | 0.0003 | 0.0006 | 0 | 0.0006 | 0.0026 | 0.003 | 0.0002 | 0.001 | 0 | 0.0001 | 0 | 0.0023 | 0.0003 |
R1 | R2 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Gene Expression | 54.5543 | 83.3779 | 42.0249 | 71.9373 | 74.1545 | 52.7652 | 69.59 | 61.1933 | 58.2809 | 68.4863 |
Translational Efficiency | 2.1006 | 1.464 | 2.4559 | 1.2834 | 1.5353 | 2.1736 | 1.4831 | 1.5135 | 1.7661 | 1.5956 |
Dataset | Hit |
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Protein Concentration | ✘ |
Protein Localization | ✘ |
Gene Expression | ✘ |
Translational Efficiency | ✘ |
Temp | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Vph1-GFP) |
---|---|---|---|---|
37℃ | ||||
RT |
Gene / Allele | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Sac6-tdTomato) |
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Gene | Images |
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Gene | Images |
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