Standard name
Human Ortholog
Description RNA-binding protein, subunit of Nrd1 complex (Nrd1p-Nab3p-Sen1p); complex interacts with exosome to mediate 3'-end formation of some mRNAs, snRNAs, snoRNAs, and CUTs; required for termination of non-poly(A) transcripts and efficient splicing; Nrd1-Nab3 pathway appears to have a role in rapid suppression of some genes when cells are shifted to poor growth conditions, indicating role for Nrd1-Nab3 in regulating cellular response to nutrient availability

Micrographs

ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Neck 0 0 0 0 0.05 0 0 0 0 0 0.05 0 0 0 0 0 0 0 0 0 0 0 0
Bud Site 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cell Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cytoplasm 0.9 0.98 0.99 0.99 0.99 0.96 0.96 0.96 0.86 0.82 0.87 1.0 0.99 1.0 0.93 0.92 0.95 0.77 0.81 0.69 0.6 0.68 0.68
Endoplasmic Reticulum 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.07 0 0.07 0 0 0 0 0 0
Endosome 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Golgi 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Mitochondria 0.15 0 0 0 0 0.06 0.07 0 0.19 0.32 0.17 0.11 0 0 0 0 0 0.12 0.08 0.14 0.2 0.16 0.1
Nucleus 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nuclear Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nucleolus 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Peroxisomes 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
SpindlePole 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Vac/Vac Membrane 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.07 0.08 0.06 0 0 0 0.06 0.06 0.05
ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 5 1 4 6
Bud 1 2 0 0 0 0 0 1 9 4 3 0 1 0 0 0 0 0 1 0 0 3 4
Bud Neck 2 1 6 2 15 14 13 19 9 6 15 0 0 0 3 3 3 0 2 1 2 3 2
Bud Site 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cell Periphery 0 2 1 0 0 3 3 2 0 0 2 0 0 0 8 3 1 0 3 4 1 1 2
Cytoplasm 77 301 322 167 294 344 387 519 320 211 283 66 241 250 772 534 506 64 253 188 58 149 136
Endoplasmic Reticulum 0 2 0 0 0 0 0 0 1 0 0 0 0 0 59 21 40 1 0 0 1 1 3
Endosome 0 0 1 0 0 0 0 0 2 0 0 0 0 0 4 5 1 1 2 2 1 3 2
Golgi 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
Mitochondria 13 6 0 5 1 20 28 11 70 83 55 7 1 0 18 15 6 9 25 37 19 34 19
Nucleus 0 1 1 1 2 1 1 6 6 5 1 0 0 0 18 8 3 0 0 3 0 0 0
Nuclear Periphery 0 0 0 0 0 1 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0
Nucleolus 0 1 0 0 0 0 1 0 1 0 0 0 1 0 1 1 0 0 0 0 0 0 0
Peroxisomes 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0
SpindlePole 0 0 0 1 1 6 8 16 4 6 10 0 0 1 1 1 0 1 2 2 1 0 4
Vac/Vac Membrane 0 1 0 0 0 1 1 0 3 0 3 0 0 0 62 44 34 2 10 8 6 14 9
Unique Cell Count 86 308 325 168 297 358 403 540 374 258 325 66 243 251 831 579 534 84 312 271 97 222 202
Labelled Cell Count 93 318 332 176 313 390 442 574 426 315 372 73 245 252 947 635 594 84 312 271 97 222 202


Nucleus

(Huh et al. Nature 2003 425:686)
Screen WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 AF100 AF140 AF180
Mean Cell GFP Intensity (1e-4) 3.2 3.6 4.3 4.1 4.8 3.6 3.8 4.2 3.3 3.1 3.7 3.7 3.9 3.9 5.5 5.4 5.3 3.4 3.6 4.2
Std Deviation (1e-4) 0.4 0.7 1.1 1.4 1.8 1.7 1.6 1.7 1.4 1.5 1.6 0.7 1.0 1.5 0.9 0.9 0.9 1.1 1.1 1.8
Intensity Change (Log2) -0.06 0.16 -0.24 -0.17 -0.02 -0.37 -0.45 -0.21 -0.22 -0.13 -0.13 0.36 0.34 0.31 -0.34 -0.25 -0.03


Localization RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3
Actin
Bud 0 0 0
Bud Neck 0 0 0
Bud Site 0 0 0
Cell Periphery 0 0 0
Cyto
Endoplasmic Reticulum 0 0 0
Endosome 0 0 0
Golgi 0 0 0
Mitochondria 0 0 0
Nuclear Periphery 0 0 0
Nuc
Nucleolus 0 0 0
Peroxisomes 0 0 0
SpindlePole 0 0 0
Vac
Cortical Patches 0 0 0
Cytoplasm 0 0 0
Nucleus 0 0 0
Vacuole 5.1 5.1 4.6

Images

Circle plot not available

Protein Concentration and Protein Localization Data

R1 R2 R3
G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase
Concentration 0.8352 1.3591 1.4362 1.0929 0.7913 1.2753 -0.1106 0.3025 -0.2267 0.3591 0.0168 -0.1377 0.2418 -0.0784 0.039 0.2791 -0.197 -0.1083
Actin 0.0199 0.0001 0.0058 0.0015 0.0025 0.0119 0.0277 0.0005 0.0062 0.0081 0.0395 0.0038 0.0337 0.0004 0.0166 0.0606 0.0291 0.002
Bud 0.0003 0.0012 0.0003 0.0006 0.001 0.0104 0.0023 0.002 0.003 0.0018 0.007 0.0008 0.0012 0.0025 0.0004 0.0035 0.0032 0.0001
Bud Neck 0.0027 0.0001 0.0004 0.0003 0.0003 0.0008 0.0014 0.0002 0.001 0.0004 0.0025 0.0009 0.0034 0.0001 0.0002 0.0014 0.0002 0.0004
Bud Periphery 0.0008 0.0008 0.0005 0.0005 0.0034 0.0047 0.0049 0.0033 0.0031 0.003 0.0075 0.0017 0.0047 0.0043 0.0006 0.005 0.0043 0.0002
Bud Site 0.0015 0.0041 0.0015 0.0002 0.0041 0.0024 0.0149 0.0038 0.0141 0.0009 0.0012 0.0004 0.0097 0.0036 0.0012 0.0064 0.0047 0.0004
Cell Periphery 0.0007 0.0003 0.0002 0.0003 0.0009 0.0002 0.0007 0.0005 0.0008 0.0001 0.0005 0.0001 0.0006 0.0003 0.0002 0.0004 0.0001 0.0001
Cytoplasm 0.1224 0.1469 0.1669 0.1325 0.0745 0.1332 0.2168 0.2496 0.191 0.3628 0.2098 0.2186 0.3455 0.3313 0.3498 0.1355 0.4036 0.3834
Cytoplasmic Foci 0.0165 0.0019 0.0203 0.0109 0.0116 0.0249 0.0318 0.0075 0.0228 0.0186 0.0341 0.0222 0.0249 0.0099 0.01 0.0159 0.0152 0.0132
Eisosomes 0.0017 0.0002 0.0012 0.0004 0.0004 0.0002 0.0005 0.0001 0.0002 0.0001 0.0007 0.0001 0.0005 0.0001 0.0003 0.0007 0.0001 0.0001
Endoplasmic Reticulum 0.0022 0.0009 0.0019 0.0051 0.0034 0.0019 0.0056 0.002 0.0018 0.0021 0.002 0.0024 0.0131 0.0007 0.0088 0.0023 0.0018 0.0023
Endosome 0.009 0.0009 0.0103 0.0124 0.0387 0.0118 0.0283 0.006 0.0219 0.0221 0.026 0.0195 0.0336 0.0033 0.0226 0.0427 0.0308 0.0172
Golgi 0.0058 0.0001 0.0048 0.0021 0.0138 0.0062 0.0061 0.0009 0.0064 0.007 0.0084 0.0017 0.0085 0.0004 0.0032 0.0218 0.002 0.0011
Lipid Particles 0.0056 0.0002 0.0064 0.0271 0.022 0.0067 0.0167 0.0002 0.004 0.0029 0.0067 0.0011 0.0145 0.0005 0.0011 0.02 0.0004 0.001
Mitochondria 0.0028 0.0004 0.0134 0.0016 0.0202 0.0147 0.0104 0.0009 0.0081 0.0028 0.0052 0.0024 0.0129 0.0004 0.0015 0.0815 0.0015 0.0007
None 0.7827 0.8332 0.7486 0.7868 0.7673 0.7494 0.6023 0.7051 0.6968 0.5444 0.6135 0.7087 0.4666 0.6371 0.5697 0.5842 0.4912 0.5696
Nuclear Periphery 0.0011 0.0002 0.0004 0.0011 0.0037 0.0012 0.0038 0.0016 0.0012 0.0007 0.0012 0.0065 0.0071 0.0003 0.0034 0.0018 0.0006 0.0029
Nucleolus 0.0006 0.0005 0.0004 0.0008 0.0019 0.0006 0.0007 0.0002 0.0011 0.0002 0.0004 0.0003 0.0003 0.0007 0.0002 0.0005 0.0001 0.0003
Nucleus 0.0007 0.0046 0.0007 0.0033 0.0061 0.0024 0.0023 0.0122 0.0023 0.0011 0.0025 0.0012 0.0022 0.0008 0.001 0.0013 0.0005 0.0013
Peroxisomes 0.0194 0.0001 0.0099 0.0015 0.0075 0.0073 0.0134 0.0001 0.0071 0.0155 0.0234 0.0014 0.0069 0.0005 0.0005 0.0072 0.0049 0.0004
Punctate Nuclear 0.0015 0.0013 0.0028 0.0086 0.0008 0.0075 0.0033 0.0004 0.0035 0.001 0.0039 0.0039 0.0036 0.0007 0.0004 0.0007 0.0007 0.0014
Vacuole 0.0015 0.0018 0.0029 0.0017 0.0117 0.0011 0.0047 0.0025 0.0028 0.0036 0.003 0.0014 0.0055 0.0019 0.0068 0.0042 0.0038 0.0015
Vacuole Periphery 0.0004 0.0002 0.0005 0.0006 0.0042 0.0005 0.0014 0.0004 0.0009 0.0009 0.001 0.0009 0.0012 0.0003 0.0016 0.0025 0.0013 0.0005

Sequencing Data

R1 R2
G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Post-START S/G2 Metaphase Anaphase Telophase
Gene Expression 51.2998 61.4182 54.3861 50.1828 43.9457 51.2714 58.5809 62.311 53.3832 48.9219
Translational Efficiency 2.5922 2.489 2.1455 2.3202 2.2731 2.3071 1.9194 1.7493 1.8781 1.9436

Hit Data

Dataset Hit
Protein Concentration
Protein Localization
Gene Expression
Translational Efficiency
Standard name
Human Ortholog
Description RNA-binding protein, subunit of Nrd1 complex (Nrd1p-Nab3p-Sen1p); complex interacts with exosome to mediate 3'-end formation of some mRNAs, snRNAs, snoRNAs, and CUTs; required for termination of non-poly(A) transcripts and efficient splicing; Nrd1-Nab3 pathway appears to have a role in rapid suppression of some genes when cells are shifted to poor growth conditions, indicating role for Nrd1-Nab3 in regulating cellular response to nutrient availability
Localization
Cell Percentages cytoplasm (82%)
Cell Cycle Regulation No
Subcompartmental Group cytoplasm-4

Nab3

Nab3


Nearest neighbours ( genes)

correlation threshold

0.6

1.0

0.80


Biological Process (Gene Ontology)

Molecular Function (Gene Ontology)

Cellular Component (Gene Ontology)


Endocytosis
Temp Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Vph1-GFP)
37℃
RT
Cell Cycle Omics

CYCLoPs (Nab3-GFP)
Gene / Allele Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Sac6-tdTomato)
Gene Images
Gene Images
Images are not yet available
Images are not yet available