Standard name
Human Ortholog
Description Type II integral membrane protein; required for beta-1,6 glucan biosynthesis; putative beta-glucan synthase; localizes to ER, plasma membrane, sites of polarized growth and secretory vesicles; functionally redundant with Skn1p; KRE6 has a paralog, SKN1, that arose from the whole genome duplication

Micrographs

ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0 0 0 0
Bud 0.05 0 0 0
Bud Neck 0 0 0 0
Bud Site 0 0
Cell Periphery 0 0 0 0
Cytoplasm 0.47 0.91 0.1 0
Endoplasmic Reticulum 0.05 0.06 0 0.08
Endosome 0 0 0.06 0.05
Golgi 0 0 0 0
Mitochondria 0.16 0 0 0.09
Nucleus 0.05 0 0 0
Nuclear Periphery 0 0 0 0
Nucleolus 0 0 0 0
Peroxisomes 0 0 0 0
SpindlePole 0 0 0 0
Vac/Vac Membrane 0.32 0.11 0.7 0.74
ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0 0 0 0
Bud 1 0 0 0
Bud Neck 0 0 0 0
Bud Site 0 0
Cell Periphery 0 0 0 0
Cytoplasm 9 330 4 0
Endoplasmic Reticulum 1 23 0 0
Endosome 0 4 2 0
Golgi 0 2 0 0
Mitochondria 3 9 0 0
Nucleus 1 3 0 0
Nuclear Periphery 0 0 0 0
Nucleolus 0 0 0 0
Peroxisomes 0 0 0 0
SpindlePole 0 1 0 0
Vac/Vac Membrane 6 39 33 7
Unique Cell Count 19 364 48 10
Labelled Cell Count 21 411 48 10


Vacuole

(Huh et al. Nature 2003 425:686)
Screen WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 AF100 AF140 AF180
Mean Cell GFP Intensity (1e-4) 5.2 3.8 4.3 5.1
Std Deviation (1e-4) 1.2 0.9 1.2 1.3
Intensity Change (Log2)

−101234560246−101234560246rpd3Δ_1rpd3Δ_2rpd3Δ_30246−101234560246
Multiple Condition Time-Course Intensity PlotsGFP Intensity (1e-4)GFP Intensity (1e-4)GFP Intensity (1e-4)GFP Intensity (1e-4)

Localization RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3
Actin
Bud
Bud Neck
Bud Site
Cell Periphery
Cyto
Endoplasmic Reticulum
Endosome
Golgi
Mitochondria
Nuclear Periphery
Nuc
Nucleolus
Peroxisomes
SpindlePole
Vac
Cortical Patches
Cytoplasm
Nucleus
Vacuole

Images

Circle plot not available

Protein Concentration and Protein Localization Data

R1 R2 R3
G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase
Concentration
Actin 0.2916 0.0027 0.001 0.0001 0.0007 0.0099 0.465 0.001 0.0003 0.0001 0.0001 0.0005
Bud 0.0031 0.0025 0.0044 0.007 0.0014 0.0005 0.0012 0.0029 0.004 0.0036 0.0014 0.0011
Bud Neck 0.21 0.0012 0.0062 0.0022 0.0014 0.006 0.007 0.0046 0.0082 0.0043 0.0029 0.0081
Bud Periphery 0.004 0.0045 0.0068 0.0034 0.0028 0.0008 0.0018 0.0043 0.0064 0.0049 0.002 0.0021
Bud Site 0.1041 0.0057 0.0054 0.004 0.002 0.0008 0.003 0.0069 0.0105 0.0111 0.0025 0.0017
Cell Periphery 0.0026 0.0009 0.001 0.0008 0.0006 0.0008 0.0003 0.0005 0.0009 0.0007 0.0005 0.0008
Cytoplasm 0.0252 0.2747 0.2687 0.1176 0.1459 0.3155 0.0747 0.3381 0.2869 0.1887 0.1092 0.332
Cytoplasmic Foci 0.0173 0.0366 0.0313 0.0448 0.0826 0.0389 0.0215 0.0505 0.0517 0.04 0.0361 0.0374
Eisosomes 0.0019 0.0001 0 0 0.0001 0.0017 0.0047 0 0 0 0 0
Endoplasmic Reticulum 0.0148 0.0093 0.0089 0.0053 0.0046 0.0045 0.0119 0.0061 0.0075 0.0046 0.0039 0.0059
Endosome 0.2188 0.1128 0.1433 0.2702 0.2549 0.1339 0.1158 0.0918 0.1222 0.1644 0.1663 0.095
Golgi 0.014 0.0018 0.0053 0.0031 0.006 0.0019 0.0417 0.002 0.0025 0.0022 0.002 0.0009
Lipid Particles 0.0039 0.003 0.0028 0.0034 0.0033 0.0012 0.0391 0.0017 0.0016 0.0011 0.002 0.0014
Mitochondria 0.0141 0.0023 0.0082 0.002 0.0468 0.001 0.0169 0.0044 0.0081 0.0037 0.0036 0.0012
None 0.002 0.3587 0.2204 0.1022 0.0544 0.1183 0.021 0.3566 0.2429 0.1684 0.1273 0.1188
Nuclear Periphery 0.0171 0.005 0.0045 0.0048 0.0031 0.0028 0.0119 0.0051 0.0059 0.0053 0.0057 0.0053
Nucleolus 0.0138 0.001 0.001 0.0015 0.001 0.0007 0.0026 0.0017 0.0025 0.0026 0.0023 0.0015
Nucleus 0.0061 0.0049 0.008 0.0064 0.0056 0.009 0.0416 0.0098 0.0156 0.0153 0.0125 0.0174
Peroxisomes 0.003 0.0004 0.0019 0.0008 0.0044 0.0004 0.0374 0.0009 0.0025 0.001 0.0019 0.0006
Punctate Nuclear 0.0056 0.0013 0.0005 0.0007 0.0014 0.0022 0.0043 0.0014 0.0019 0.0011 0.0063 0.0028
Vacuole 0.0154 0.1581 0.2522 0.3873 0.3473 0.3295 0.07 0.1007 0.1989 0.3515 0.4729 0.3463
Vacuole Periphery 0.0117 0.0124 0.0182 0.0326 0.0298 0.0196 0.0067 0.0091 0.019 0.0253 0.0385 0.0192

Sequencing Data

R1 R2
G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Post-START S/G2 Metaphase Anaphase Telophase
Gene Expression 190.5324 101.693 73.4302 84.1675 115.7453 128.9907 114.9251 96.9389 89.263 140.9201
Translational Efficiency 1.0148 1.1945 0.9012 0.7568 0.9747 1.352 0.9429 0.7598 0.7975 0.8253

Hit Data

Dataset Hit
Protein Concentration
Protein Localization
Gene Expression
Translational Efficiency

Micrographs

Cell Count

R1 R2 R1 & R2
WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14
2043 723 619 231 156 22 110 78 2199 745 729 309

Protein Abundance

R1 R2 R1 & R2
WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14
Mean 781.33 695.83 838.96 796.98 724.00 719.05 943.30 901.56 777.26 696.52 854.70 823.38
Standard Deviation 95.34 106.61 123.77 86.91 89.91 97.29 149.35 137.94 96.09 106.42 133.29 111.87
Intensity Change Log 2 -0.167197 0.102670 0.028612 -0.009898 0.381727 0.316434 -0.089400 0.243628 0.174215

Localization Score (DeepLoc)

R1 R2 R1 & R2
WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14
Actin 0.000826 0.000359 0.000328 0.000233 0.000413 0.000036 0.006866 0.000522 0.000797 0.000350 0.001314 0.000306
Bud Neck 0.032858 0.026922 0.008219 0.007691 0.037675 0.057264 0.025333 0.023097 0.033200 0.027818 0.010801 0.011580
Bud Site 0.022648 0.009171 0.011275 0.006655 0.015617 0.031301 0.060264 0.024833 0.022150 0.009825 0.018667 0.011243
Cell Periphery 0.000214 0.000176 0.000478 0.000160 0.000293 0.001065 0.001194 0.000301 0.000219 0.000202 0.000586 0.000196
Cytoplasm 0.367448 0.318294 0.425221 0.341643 0.212292 0.132887 0.186246 0.405484 0.356441 0.312819 0.389162 0.357758
Cytoplasmic Foci 0.071268 0.245498 0.047692 0.041088 0.171370 0.066457 0.113481 0.087511 0.078369 0.240211 0.057619 0.052807
Eisosomes 0.000103 0.000254 0.000117 0.000116 0.000354 0.000119 0.000534 0.000113 0.000121 0.000250 0.000180 0.000115
Endoplasmic Reticulum 0.001010 0.001593 0.000937 0.002541 0.001532 0.002266 0.009159 0.008321 0.001047 0.001613 0.002178 0.004000
Endosome 0.025078 0.062671 0.006404 0.009950 0.096839 0.069963 0.113188 0.030440 0.030169 0.062887 0.022517 0.015122
Golgi 0.003326 0.005924 0.000119 0.000088 0.001029 0.003010 0.011812 0.000242 0.003163 0.005838 0.001884 0.000127
Lipid Particles 0.002732 0.017159 0.001209 0.002514 0.007354 0.004441 0.013848 0.006263 0.003060 0.016783 0.003116 0.003460
Mitochondria 0.005644 0.003231 0.000242 0.000169 0.000727 0.001726 0.000557 0.000246 0.005295 0.003187 0.000290 0.000189
Mitotic Spindle 0.015383 0.001908 0.004868 0.000352 0.000128 0.000031 0.009019 0.002636 0.014301 0.001853 0.005494 0.000928
None 0.001356 0.002167 0.015394 0.004496 0.000418 0.000019 0.001991 0.001724 0.001289 0.002103 0.013372 0.003796
Nuclear Periphery 0.000940 0.000627 0.000513 0.001106 0.000433 0.000185 0.000762 0.003590 0.000904 0.000614 0.000551 0.001733
Nuclear Periphery Foci 0.000415 0.001376 0.001211 0.001562 0.000628 0.000160 0.007936 0.011316 0.000430 0.001340 0.002225 0.004024
Nucleolus 0.000705 0.001191 0.000980 0.000627 0.000419 0.000181 0.001764 0.000968 0.000685 0.001161 0.001098 0.000713
Nucleus 0.093271 0.053516 0.174307 0.231882 0.027316 0.009541 0.028499 0.100078 0.088592 0.052217 0.152306 0.198611
Peroxisomes 0.005376 0.010199 0.000786 0.001374 0.008376 0.000709 0.006201 0.001763 0.005589 0.009919 0.001603 0.001472
Vacuole 0.348165 0.235339 0.299442 0.345577 0.412850 0.583268 0.399077 0.289994 0.352754 0.245614 0.314476 0.331546
Vacuole Periphery 0.001232 0.002424 0.000259 0.000177 0.003936 0.035372 0.002268 0.000558 0.001424 0.003397 0.000562 0.000273

Localization Changes (T-score)

R1 R2 R1 & R2
UBP2_WT UBP14_WT UBP2UBP14_WT UBP2UBP14_UBP2 UBP2UBP14_UBP14 UBP2_WT UBP14_WT UBP2UBP14_WT UBP2UBP14_UBP2 UBP2UBP14_UBP14 UBP2_WT UBP14_WT UBP2UBP14_WT UBP2UBP14_UBP2 UBP2UBP14_UBP14
Actin 1.10 1.06 1.13 -0.03 -0.26 2.06 -1.98 -0.70 -4.26 1.93 1.15 -1.19 0.87 -0.76 1.67
Bud Neck 0.97 12.50 9.80 5.70 -0.77 -0.74 1.64 1.48 1.22 0.09 0.83 10.94 6.89 4.34 -1.01
Bud Site 4.19 3.15 4.86 1.11 1.30 -0.85 -2.86 -0.90 0.46 2.08 3.80 0.28 2.41 -0.50 1.67
Cell Periphery -0.55 -1.20 -0.66 -0.21 1.03 -1.41 -2.09 -0.25 1.38 2.04 -1.03 -2.19 -1.48 -0.41 1.79
Cytoplasm 1.62 0.00 7.10 5.66 6.15 1.64 0.78 -4.14 -4.28 -4.48 1.36 1.06 4.42 3.27 3.21
Cytoplasmic Foci -23.93 8.46 7.41 26.05 0.89 3.18 3.39 5.18 -0.40 1.77 -22.33 6.52 5.72 23.40 0.59
Eisosomes -7.43 -0.98 -6.99 4.30 -4.99 3.49 -0.40 3.69 0.04 1.38 -6.45 -1.16 -3.83 4.66 0.17
Endoplasmic Reticulum -2.99 -2.47 -7.68 -6.35 -7.00 -0.84 -2.78 -2.72 -2.39 0.03 -2.91 -3.39 -6.37 -5.58 -4.00
Endosome -11.60 10.72 6.28 15.04 -1.79 1.15 0.23 5.66 2.37 3.94 -10.16 2.67 5.28 13.10 1.64
Golgi -2.69 3.57 3.59 4.69 0.44 -0.76 -0.98 4.85 1.06 1.08 -2.79 0.48 3.65 4.73 1.07
Lipid Particles -8.76 6.69 -0.65 8.64 -6.60 1.10 -1.71 0.41 -0.93 2.14 -8.55 -0.25 -2.31 7.97 -1.30
Mitochondria 0.80 4.87 4.87 4.09 0.11 -1.47 0.72 2.63 2.18 0.93 0.65 4.85 4.90 4.13 0.71
Mitotic Spindle 5.31 2.62 6.39 1.21 2.95 2.56 -2.10 -1.57 -1.62 1.33 5.23 1.99 5.61 0.30 2.94
None -0.88 -3.12 -3.32 -0.74 2.27 2.18 -1.29 -2.97 -4.40 0.25 -0.89 -3.19 -3.49 -0.54 2.36
Nuclear Periphery 5.92 5.99 -2.34 -6.03 -5.43 1.61 -2.45 -1.79 -1.95 -1.38 5.70 4.58 -1.98 -3.41 -2.80
Nuclear Periphery Foci -2.35 -7.33 -5.05 -1.53 -1.25 2.23 -4.70 -2.99 -3.10 -1.17 -2.29 -7.63 -4.03 -3.06 -2.01
Nucleolus -1.92 0.60 1.11 2.37 0.15 2.76 -1.48 -1.91 -2.63 0.65 -1.96 -0.19 0.20 1.84 0.29
Nucleus 9.47 -6.70 -9.97 -12.44 -6.23 3.25 -1.16 -4.58 -5.71 -3.47 9.04 -5.85 -9.64 -12.33 -6.02
Peroxisomes -3.97 7.31 4.98 6.29 -1.90 4.77 1.32 4.12 -2.58 3.56 -3.70 6.25 5.86 6.27 -0.05
Vacuole 14.69 -1.84 -2.04 -9.15 -0.67 -2.33 -0.18 2.80 3.65 2.67 13.88 -1.85 -0.51 -8.25 0.75
Vacuole Periphery -5.23 3.63 3.95 10.28 1.84 -1.29 1.45 2.50 1.43 2.51 -2.82 3.05 4.27 3.98 2.33
Protein Complexes26S Proteasome complex37S mitochondrial small ribosomal subunit54S mitochondrial large ribosomal subunit60S cytosolic large ribosomal subunitAar2-U5 snRNPAnaphase-Promoting Complex variant 1Anaphase-Promoting Complex variant 2Anaphase-Promoting Complex variant 3Anaphase-Promoting Complex variant 4Arp2/3 complexATG1 kinase complexBLOC-1 complexCcr4-Not complexCentral kinetochore CTF19 complexCleavage and polyadenylation specificity factorcomplexCMG helicase complexCMG-Pol epsilon complexCOMPASS complexCOP9 signalosome COPI vesicle coat complexCoQ6 biosynthesis complexCore mediator complexCORVET complexCTF18-RFC complexCURI complex variant 1CURI complex variant 2CURI complex variant 3Cytoplasmic exosome complex, DIS3 variantDASH complexDNA-directed RNA Polymerase I complexDNA-directed RNA polymerase II complexDNA-directed RNA polymerase III complexDNA replication factor C complexEGO complexELG1-RFC complex Elongator holoenzyme complexEndoplasmic Reticulum Membrane ComplexEukaryotic translation initiation factor 2BcomplexEukaryotic translation initiation factor 3core complexExocystExomer complexFAR complexGeneral transcription factor complex TFIIDGeneral transcription factor complex TFIIHGET4-GET5 transmembrane domain recognition complexGID ubiquitin ligase complexGin4 complexGolgi transport complexGSE complexHMC complexHOPS complexINO80 chromatin remodeling complexLSM1-7 complexLsm1-7-Pat1 complexLSM2-7 complexLSM2-8 complexMCM complexMICOS complexMitochondrial electron transport complex IIIMitochondrial inner membrane pre-sequence translocasecomplexMitochondrial outer membrane translocase holocomplexMitochondrial proton-transporting ATP synthase complexMitochondrial pyruvate dehydrogenase complexNineTeen complexNOP8 60s ribosome pre-assembly complexNuA3 histone acetyltransferase complexNuA4 histone acetyltransferase complexNuclear condensin complexNuclear/nucleolar exosome complex, DIS3-RRP6 variantNuclear pore complexNucleolar ribonuclease MRP complexNucleolar ribonuclease P complexOligosaccharyl transferase complex variant 1Oligosaccharyl transferase complex variant 2PAF1 complexPAS complexPhosphatidylinositol 3-kinase complex IPolarisomePrefoldin complexPRP19-associated complexRad17 RFC-like complexRetromer complexRPD3L histone deacetylase complexRPD3S histone deacetylase complexRQC complexRSC complex variant RSC1RSC complex variant RSC2SAGA complexSCF-Met30 ubiquitin ligase complexSCF-Ufo1 ubiquitin ligase complexSEA complexSeptin complexSET3C histone deacetylase complexSignal recognition particleSLIK (SAGA-like) complexSmall ribosomal subunit processome, variant1Small ribosomal subunit processome, variant2Small ribosomal subunit processome, variant3SMC5-SMC6 SUMO ligase complexSm complexSpliceosomal commitment complexSPOTS complexSWI/SNF chromatin remodelling complexSwr1 chromatin remodelling complexTHO complexTranscription factor TFIIIC complexTranslocon complexTRAPPIII protein complexTRAPPII protein complexTRAPPI protein complexTREX complexU1 snRNPU2 snRNPU4 snRNPU4/U6 snRNPU4/U6.U5 tri-snRNP complexU5 snRNPU6 snRNP complexUTP-A complexUTP-B complexUTP-C complex variant 1UTP-C complex variant 2UTP-C complex variant 3Vacuolar proton translocating ATPase complex,Golgi variantVacuolar proton translocating ATPase complex,vacuole variantCellular Componentsactinbud neckcell peripherycytoplasmendosomeERGolgimitochondrionmixednuclear peripherynucleolusnucleusperoxisomespindle polevacuolar membranevacuole
Standard name
Human Ortholog
Description Type II integral membrane protein; required for beta-1,6 glucan biosynthesis; putative beta-glucan synthase; localizes to ER, plasma membrane, sites of polarized growth and secretory vesicles; functionally redundant with Skn1p; KRE6 has a paralog, SKN1, that arose from the whole genome duplication
Localization
Cell Percentages vacuole (16%), ER (4%), mixed (50%)
Cell Cycle Regulation No
Subcompartmental Group N/A

Kre6

Kre6


Nearest neighbours ( genes)

correlation threshold

0.6

1.0

0.80


Biological Process (Gene Ontology)

Molecular Function (Gene Ontology)

Cellular Component (Gene Ontology)


Endocytosis
Temp Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Vph1-GFP)
37℃
RT
Cell Cycle Omics

CYCLoPs (Kre6-GFP)
Gene / Allele Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Sac6-tdTomato)
Gene Images
Gene Images
Images are not yet available
Images are not yet available