Standard name | |
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Human Ortholog | |
Description | Peripheral membrane protein needed for Golgi-to-ER retrograde traffic; mediates Sey1p-independent homotypic ER fusion; forms Dsl1 tethering complex with Sec39p and Tip20p that forms a stable complex with ER SNAREs Sec20p, Ufe1p and Use1p and is functionally conserved from yeast to mammalian cells; component of the ER target site that interacts with coatomer; interacts with different subunits of COPI vesicle coat; interacts with Cin5p; homolog of fly and human ZW10 gene |
ensLOC | DeepLoc | |||||||||||||||||||||||
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Localization | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | WT1 | WT2 | WT3 | AF100 | AF140 | AF180 |
Cortical Patches | 8 | 24 | 28 | 28 | 12 | 14 | 10 | – | 10 | 7 | 5 | 16 | 33 | 20 | 15 | 28 | 26 | 15 | 2 | 8 | 8 | 22 | 23 | 17 |
Bud | 1 | 1 | 8 | 8 | 2 | 11 | 9 | – | 14 | 19 | 18 | 18 | 5 | 4 | 2 | 8 | 7 | 1 | 0 | 2 | 0 | 1 | 2 | 1 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 4 | 3 | 4 | 4 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 0 | 1 | – | 1 | 1 | 3 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | – | – | – | – | – | – |
Cell Periphery | 1 | 17 | 28 | 20 | 13 | 23 | 14 | – | 13 | 5 | 10 | 19 | 25 | 40 | 35 | 27 | 24 | 32 | 1 | 1 | 9 | 8 | 23 | 33 |
Cytoplasm | 8 | 22 | 58 | 53 | 67 | 58 | 110 | – | 66 | 100 | 112 | 121 | 60 | 93 | 117 | 101 | 39 | 35 | 1 | 4 | 14 | 7 | 8 | 7 |
Endoplasmic Reticulum | 51 | 120 | 126 | 65 | 72 | 71 | 60 | – | 59 | 34 | 27 | 87 | 182 | 225 | 234 | 8 | 4 | 5 | 76 | 149 | 212 | 263 | 247 | 280 |
Endosome | 0 | 0 | 0 | 0 | 0 | 1 | 6 | – | 1 | 0 | 5 | 2 | 0 | 2 | 1 | 0 | 0 | 1 | 0 | 1 | 3 | 2 | 4 | 2 |
Golgi | 0 | 1 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 5 | 3 | 1 | 0 | 1 | 1 | 4 | 5 | 6 |
Mitochondria | 11 | 8 | 6 | 36 | 13 | 69 | 96 | – | 129 | 168 | 227 | 107 | 18 | 2 | 3 | 14 | 3 | 5 | 0 | 3 | 41 | 26 | 24 | 26 |
Nucleus | 0 | 0 | 3 | 0 | 0 | 0 | 2 | – | 1 | 4 | 6 | 8 | 0 | 0 | 1 | 3 | 0 | 3 | 0 | 0 | 0 | 0 | 0 | 0 |
Nuclear Periphery | 1 | 0 | 0 | 0 | 0 | 2 | 1 | – | 0 | 5 | 4 | 1 | 0 | 1 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
Nucleolus | 1 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Peroxisomes | 0 | 0 | 0 | 0 | 0 | 1 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
SpindlePole | 0 | 0 | 0 | 0 | 0 | 0 | 3 | – | 1 | 0 | 2 | 0 | 0 | 0 | 0 | 3 | 2 | 2 | 0 | 0 | 0 | 0 | 0 | 0 |
Vac/Vac Membrane | 0 | 9 | 12 | 1 | 17 | 19 | 33 | – | 15 | 32 | 53 | 31 | 0 | 2 | 2 | 29 | 12 | 14 | 0 | 5 | 18 | 10 | 5 | 15 |
Unique Cell Count | 66 | 156 | 225 | 166 | 179 | 207 | 276 | 249 | 303 | 361 | 346 | 279 | 334 | 364 | 193 | 100 | 95 | 86 | 183 | 320 | 357 | 354 | 404 | |
Labelled Cell Count | 82 | 202 | 269 | 211 | 196 | 269 | 345 | 310 | 375 | 473 | 411 | 324 | 389 | 412 | 227 | 120 | 114 | 86 | 183 | 320 | 357 | 354 | 404 |
Screen | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | AF100 | AF140 | AF180 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Mean Cell GFP Intensity (1e-4) | 8.3 | 8.7 | 7.5 | 6.9 | 7.5 | 5.8 | 6.0 | – | 5.2 | 5.0 | 4.7 | 5.4 | 7.0 | 7.1 | 7.0 | 8.6 | 9.2 | 8.9 | 7.1 | 7.4 | 7.8 |
Std Deviation (1e-4) | 1.1 | 1.3 | 0.9 | 0.8 | 1.1 | 0.9 | 1.2 | – | 1.0 | 1.0 | 0.8 | 0.8 | 0.7 | 0.8 | 0.9 | 1.4 | 1.6 | 1.3 | 1.1 | 1.2 | 1.3 |
Intensity Change (Log2) | – | – | – | -0.13 | -0.02 | -0.38 | -0.33 | – | -0.53 | -0.61 | -0.69 | -0.49 | -0.1 | -0.09 | -0.11 | 0.19 | 0.29 | 0.23 | -0.09 | -0.03 | 0.06 |
Localization | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Cortical Patches | 1.2 | -1.9 | -2.0 | -3.7 | – | -3.4 | -4.6 | 0 | -3.4 | -0.2 | -2.7 | -3.8 | 0.6 | 3.0 | 0.8 |
Bud | 0.6 | 0 | 0.9 | -0.2 | – | 1.1 | 1.4 | 0 | 0.9 | -1.2 | 0 | 0 | 0.3 | 0 | 0 |
Bud Neck | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cell Periphery | -0.1 | -1.7 | -0.4 | -3.0 | – | -2.8 | -5.1 | 0 | -3.0 | -1.3 | -0.2 | -1.1 | 0.5 | 2.6 | 4.4 |
Cytoplasm | 1.3 | 2.5 | 0.5 | 3.3 | – | 0.2 | 1.8 | 1.4 | 2.3 | -1.1 | 0.5 | 1.6 | 5.6 | 2.4 | 2.0 |
Endoplasmic Reticulum | -3.3 | -3.2 | -4.5 | -7.9 | – | -7.2 | -11.1 | 0 | -7.4 | 2.1 | 2.7 | 2.0 | -11.3 | -8.8 | -8.4 |
Endosome | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Golgi | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Mitochondria | 6.0 | 2.2 | 8.4 | 8.9 | – | 11.8 | 12.8 | 0 | 8.3 | 2.0 | 0 | 0 | 2.2 | 0 | 0 |
Nucleus | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nuclear Periphery | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleolus | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Peroxisomes | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Vacuole | -2.6 | 1.6 | 1.5 | 2.6 | – | 0.3 | 2.1 | 3.5 | 1.6 | -3.9 | -3.5 | -3.7 | 3.3 | 2.1 | 2.8 |
R1 | R2 | R3 | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Concentration | 3.2448 | 3.3352 | 3.2976 | 2.9751 | 3.1379 | 3.328 | 4.135 | 4.1943 | 4.27 | 4.1182 | 3.6595 | 4.2503 | 3.7089 | 3.714 | 3.5978 | 3.7059 | 3.0605 | 3.5813 |
Actin | 0.0675 | 0.0189 | 0.0663 | 0.0048 | 0.0095 | 0.011 | 0.0198 | 0.0065 | 0.032 | 0.0544 | 0.01 | 0.0072 | 0.0242 | 0.0067 | 0.0378 | 0.0025 | 0.0383 | 0.006 |
Bud | 0.001 | 0.0007 | 0.0131 | 0.0008 | 0.0003 | 0.0002 | 0.0003 | 0.0006 | 0.0045 | 0.0008 | 0.0004 | 0.0003 | 0.003 | 0.001 | 0.0073 | 0.0002 | 0.0002 | 0.0002 |
Bud Neck | 0.0108 | 0.0019 | 0.0039 | 0.0012 | 0.0025 | 0.0369 | 0.0025 | 0.0012 | 0.0015 | 0.0041 | 0.0036 | 0.0187 | 0.0062 | 0.0015 | 0.0017 | 0.0002 | 0.001 | 0.0054 |
Bud Periphery | 0.0016 | 0.0017 | 0.0213 | 0.0016 | 0.0003 | 0.0004 | 0.0005 | 0.0008 | 0.0096 | 0.0032 | 0.0043 | 0.0007 | 0.0084 | 0.0014 | 0.0301 | 0.0008 | 0.0002 | 0.0003 |
Bud Site | 0.0081 | 0.0183 | 0.0233 | 0.0014 | 0.0009 | 0.0004 | 0.0015 | 0.0093 | 0.0096 | 0.0014 | 0.0008 | 0.0006 | 0.0062 | 0.0292 | 0.0057 | 0.0002 | 0.0013 | 0.0018 |
Cell Periphery | 0.0064 | 0.0089 | 0.0068 | 0.002 | 0.0005 | 0.0027 | 0.0017 | 0.005 | 0.0028 | 0.0072 | 0.0049 | 0.0013 | 0.0021 | 0.0027 | 0.0044 | 0.0013 | 0.0006 | 0.0008 |
Cytoplasm | 0.1542 | 0.3439 | 0.26 | 0.2807 | 0.3393 | 0.3375 | 0.1412 | 0.3738 | 0.2539 | 0.2353 | 0.2536 | 0.2631 | 0.1485 | 0.3871 | 0.2369 | 0.1971 | 0.1782 | 0.2798 |
Cytoplasmic Foci | 0.0277 | 0.0164 | 0.0322 | 0.0256 | 0.0271 | 0.0222 | 0.0202 | 0.0204 | 0.0157 | 0.0193 | 0.0386 | 0.0122 | 0.0222 | 0.0238 | 0.0215 | 0.0043 | 0.0224 | 0.0146 |
Eisosomes | 0.0043 | 0.0007 | 0.0007 | 0.0001 | 0.0001 | 0.0002 | 0.0002 | 0.0003 | 0.0004 | 0.0004 | 0.0008 | 0.0001 | 0.0012 | 0.0002 | 0.0004 | 0.0001 | 0.0003 | 0.0001 |
Endoplasmic Reticulum | 0.4811 | 0.4856 | 0.4095 | 0.512 | 0.5224 | 0.4728 | 0.6771 | 0.43 | 0.5497 | 0.5686 | 0.5333 | 0.6097 | 0.4802 | 0.4063 | 0.508 | 0.746 | 0.6092 | 0.5737 |
Endosome | 0.0581 | 0.0288 | 0.06 | 0.0604 | 0.0507 | 0.0493 | 0.0505 | 0.0572 | 0.0417 | 0.0419 | 0.0616 | 0.0387 | 0.0765 | 0.0581 | 0.0487 | 0.0172 | 0.0463 | 0.047 |
Golgi | 0.029 | 0.0091 | 0.0293 | 0.0183 | 0.0112 | 0.014 | 0.0189 | 0.0189 | 0.0184 | 0.0195 | 0.0304 | 0.01 | 0.0224 | 0.0128 | 0.0203 | 0.0032 | 0.0095 | 0.0131 |
Lipid Particles | 0.0247 | 0.0169 | 0.0188 | 0.0149 | 0.0071 | 0.0056 | 0.0169 | 0.0185 | 0.0055 | 0.0077 | 0.0147 | 0.0042 | 0.0299 | 0.0114 | 0.0136 | 0.0019 | 0.0247 | 0.0112 |
Mitochondria | 0.0061 | 0.0032 | 0.0068 | 0.0204 | 0.0046 | 0.0032 | 0.0044 | 0.0032 | 0.0088 | 0.0077 | 0.011 | 0.0062 | 0.036 | 0.0028 | 0.0224 | 0.0012 | 0.0027 | 0.0035 |
None | 0.0297 | 0.021 | 0.0228 | 0.0194 | 0.0055 | 0.0281 | 0.0053 | 0.0238 | 0.0133 | 0.0071 | 0.0059 | 0.0043 | 0.0347 | 0.0194 | 0.0083 | 0.0017 | 0.0069 | 0.0104 |
Nuclear Periphery | 0.0273 | 0.0097 | 0.0096 | 0.0172 | 0.0084 | 0.006 | 0.0205 | 0.0132 | 0.0158 | 0.0095 | 0.0151 | 0.0124 | 0.042 | 0.0166 | 0.0137 | 0.0146 | 0.0155 | 0.0114 |
Nucleolus | 0.001 | 0.0003 | 0.0004 | 0.0004 | 0.0001 | 0.0002 | 0.0002 | 0.0003 | 0.0004 | 0.0001 | 0.0001 | 0.0001 | 0.0029 | 0.0002 | 0.0007 | 0 | 0.002 | 0.0002 |
Nucleus | 0.0229 | 0.0027 | 0.0025 | 0.0045 | 0.0027 | 0.0028 | 0.0035 | 0.0059 | 0.0036 | 0.0018 | 0.0021 | 0.0031 | 0.0199 | 0.0043 | 0.0027 | 0.0031 | 0.006 | 0.0032 |
Peroxisomes | 0.0179 | 0.0004 | 0.0021 | 0.004 | 0.0005 | 0.0005 | 0.0067 | 0.0004 | 0.0019 | 0.0022 | 0.0008 | 0.0004 | 0.008 | 0.0028 | 0.0043 | 0.0001 | 0.0097 | 0.0079 |
Punctate Nuclear | 0.01 | 0.001 | 0.0028 | 0.0022 | 0.0015 | 0.0014 | 0.0018 | 0.0017 | 0.0034 | 0.0008 | 0.0015 | 0.0008 | 0.0106 | 0.0014 | 0.0032 | 0.0004 | 0.0207 | 0.0038 |
Vacuole | 0.0082 | 0.0086 | 0.0065 | 0.0059 | 0.0035 | 0.0041 | 0.0046 | 0.0083 | 0.0059 | 0.0059 | 0.005 | 0.0049 | 0.0096 | 0.0089 | 0.0062 | 0.0033 | 0.0034 | 0.0044 |
Vacuole Periphery | 0.0025 | 0.0014 | 0.0013 | 0.0021 | 0.0012 | 0.0007 | 0.0015 | 0.001 | 0.0016 | 0.001 | 0.0017 | 0.0012 | 0.005 | 0.0012 | 0.0019 | 0.0008 | 0.0009 | 0.0012 |
R1 | R2 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Gene Expression | 16.5632 | 13.9356 | 12.926 | 18.557 | 17.3695 | 15.0934 | 18.9337 | 15.8995 | 17.7622 | 21.393 |
Translational Efficiency | 0.9013 | 0.9458 | 1.0501 | 0.8341 | 0.847 | 0.8281 | 0.7245 | 0.7481 | 0.831 | 0.8158 |
Dataset | Hit |
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Protein Concentration | ✘ |
Protein Localization | ✘ |
Gene Expression | ✘ |
Translational Efficiency | ✘ |
Temp | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Vph1-GFP) |
---|---|---|---|---|
37℃ | ||||
RT |
Gene / Allele | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Sac6-tdTomato) |
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Gene | Images |
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Gene | Images |
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