Standard name | |
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Description | RNA binding protein that sequesters CLN3 mRNA in cytoplasmic foci; regulates genes involved in the cell cycle, sister chromatid cohesion, and stress response; acts as a cytoplasmic retention factor for Cdc28p and associated cyclins; regulates cell fate and dose-dependently regulates the critical cell size required for passage through Start; Tpk1p (PKA) mediated phosphorylation (S568) inhibits Whi3p function, decreasing its interaction with CLN3 mRNA; regulates ploidy |
ensLOC | DeepLoc | |||||||||||||||||||||||
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Localization | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | WT1 | WT2 | WT3 | AF100 | AF140 | AF180 |
Cortical Patches | 0 | 0 | 0 | 1 | 2 | 12 | 28 | – | 21 | 20 | 15 | 9 | 0 | 1 | 4 | – | – | – | 0 | 0 | 1 | 0 | 0 | 0 |
Bud | 0 | 0 | 0 | 0 | 0 | 0 | 2 | – | 0 | 0 | 1 | 5 | 0 | 1 | 0 | – | – | – | 0 | 0 | 0 | 0 | 1 | 0 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | – | – | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | – | – | – | – | – | – | – | – |
Cell Periphery | 1 | 2 | 6 | 7 | 8 | 19 | 30 | – | 24 | 32 | 17 | 21 | 1 | 9 | 19 | – | – | – | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 174 | 113 | 147 | 221 | 320 | 361 | 468 | – | 273 | 319 | 216 | 209 | 133 | 272 | 360 | – | – | – | 163 | 115 | 142 | 84 | 207 | 224 |
Endoplasmic Reticulum | 3 | 4 | 6 | 10 | 26 | 54 | 92 | – | 76 | 86 | 34 | 49 | 3 | 8 | 11 | – | – | – | 5 | 3 | 13 | 2 | 3 | 4 |
Endosome | 0 | 0 | 0 | 0 | 1 | 1 | 2 | – | 0 | 2 | 1 | 1 | 0 | 1 | 1 | – | – | – | 0 | 0 | 0 | 0 | 0 | 1 |
Golgi | 0 | 0 | 0 | 0 | 7 | 2 | 4 | – | 2 | 3 | 4 | 6 | 0 | 0 | 0 | – | – | – | 0 | 0 | 1 | 0 | 0 | 0 |
Mitochondria | 0 | 0 | 1 | 0 | 3 | 18 | 29 | – | 20 | 22 | 57 | 66 | 0 | 0 | 0 | – | – | – | 0 | 0 | 1 | 0 | 0 | 0 |
Nucleus | 1 | 0 | 2 | 0 | 0 | 0 | 0 | – | 2 | 0 | 0 | 0 | 1 | 1 | 1 | – | – | – | 0 | 0 | 0 | 0 | 1 | 0 |
Nuclear Periphery | 0 | 0 | 0 | 1 | 0 | 0 | 0 | – | 0 | 2 | 0 | 1 | 1 | 0 | 0 | – | – | – | 0 | 1 | 0 | 1 | 0 | 0 |
Nucleolus | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 2 | 0 | 1 | 0 | – | – | – | 0 | 0 | 0 | 0 | 0 | 0 |
Peroxisomes | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | – | – | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | – | – | 0 | 0 | 0 | 0 | 0 | 0 |
Vac/Vac Membrane | 0 | 0 | 1 | 1 | 20 | 8 | 28 | – | 5 | 6 | 7 | 33 | 0 | 1 | 0 | – | – | – | 1 | 2 | 5 | 1 | 2 | 0 |
Unique Cell Count | 177 | 116 | 156 | 233 | 368 | 433 | 617 | 376 | 447 | 308 | 354 | 138 | 282 | 372 | 173 | 126 | 172 | 93 | 220 | 236 | ||||
Labelled Cell Count | 179 | 119 | 163 | 241 | 387 | 475 | 683 | 423 | 492 | 352 | 402 | 139 | 295 | 396 | 173 | 126 | 172 | 93 | 220 | 236 |
Screen | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | AF100 | AF140 | AF180 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Mean Cell GFP Intensity (1e-4) | 12.8 | 16.0 | 12.5 | 12.6 | 13.7 | 12.3 | 12.4 | – | 11.7 | 12.2 | 11.7 | 11.7 | 13.1 | 13.4 | 12.8 | – | – | – | 10.0 | 12.0 | 12.0 |
Std Deviation (1e-4) | 1.5 | 2.5 | 2.3 | 1.6 | 1.9 | 1.8 | 1.9 | – | 1.9 | 2.1 | 9.0 | 4.6 | 2.2 | 1.8 | 1.7 | – | – | – | 1.6 | 1.6 | 1.7 |
Intensity Change (Log2) | – | – | – | 0.01 | 0.13 | -0.03 | -0.01 | – | -0.1 | -0.03 | -0.1 | -0.1 | 0.07 | 0.1 | 0.03 | – | – | – | -0.32 | -0.06 | -0.06 |
Localization | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Cortical Patches | 0 | 0 | 0 | 2.7 | – | 3.0 | 2.7 | 2.8 | 0 | 0 | 0 | 0 | – | – | – |
Bud | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | – | – |
Bud Neck | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | – | – |
Bud Site | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | – | – |
Cell Periphery | -0.5 | 0 | 0.3 | 0.5 | – | 1.2 | 1.5 | 0.8 | 1.0 | 0 | -0.4 | 0.6 | – | – | – |
Cytoplasm | 0.3 | -2.4 | -3.4 | -5.1 | – | -5.6 | -5.9 | -5.9 | -8.0 | 0.9 | 1.1 | 1.4 | – | – | – |
Endoplasmic Reticulum | 0.2 | 1.4 | 3.1 | 3.7 | – | 4.8 | 4.6 | 2.6 | 3.4 | 0 | 0 | -0.5 | – | – | – |
Endosome | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | – | – |
Golgi | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | – | – |
Mitochondria | 0 | 0 | 2.1 | 2.3 | – | 2.5 | 2.4 | 5.5 | 5.5 | 0 | 0 | 0 | – | – | – |
Nucleus | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | – | – |
Nuclear Periphery | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | – | – |
Nucleolus | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | – | – |
Peroxisomes | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | – | – |
SpindlePole | 0 | 0 | 0 | 0 | – | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | – | – |
Vacuole | 0 | 2.6 | 0 | 2.3 | – | 0 | 0 | 0 | 3.6 | 0 | 0 | 0 | – | – | – |