Standard name | |
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Human Ortholog | |
Description | Component of the Sec23p-Sfb2p heterodimer of the COPII vesicle coat; required for cargo selection during vesicle formation in ER to Golgi transport; homologous to Sfb3p; SFB2 has a paralog, SEC24, that arose from the whole genome duplication |
ensLOC | DeepLoc | |||||||||||||||||||||||
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Localization | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | WT1 | WT2 | WT3 | AF100 | AF140 | AF180 |
Cortical Patches | 137 | 89 | 177 | 41 | 52 | 40 | 17 | 56 | 50 | 28 | 52 | 40 | 55 | 26 | 22 | 88 | 24 | 12 | 134 | 87 | 218 | 64 | 58 | 49 |
Bud | 7 | 8 | 12 | 8 | 6 | 14 | 17 | 16 | 13 | 20 | 20 | 22 | 10 | 2 | 2 | 17 | 5 | 2 | 1 | 1 | 0 | 0 | 1 | 1 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 4 | 4 | 2 | 3 | 2 | 5 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 3 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | – | – | – | – | – |
Cell Periphery | 19 | 16 | 33 | 13 | 23 | 6 | 14 | 11 | 20 | 14 | 24 | 14 | 34 | 12 | 17 | 29 | 9 | 17 | 11 | 8 | 16 | 11 | 16 | 8 |
Cytoplasm | 136 | 107 | 80 | 27 | 23 | 45 | 65 | 43 | 46 | 44 | 33 | 19 | 131 | 109 | 131 | 156 | 88 | 53 | 31 | 21 | 9 | 11 | 18 | 20 |
Endoplasmic Reticulum | 231 | 217 | 236 | 66 | 164 | 199 | 135 | 148 | 163 | 123 | 104 | 118 | 206 | 79 | 88 | 17 | 10 | 4 | 266 | 213 | 157 | 113 | 138 | 168 |
Endosome | 13 | 1 | 22 | 11 | 14 | 6 | 11 | 15 | 2 | 5 | 3 | 4 | 0 | 0 | 0 | 3 | 3 | 3 | 7 | 5 | 16 | 2 | 3 | 5 |
Golgi | 20 | 2 | 11 | 3 | 13 | 4 | 4 | 4 | 8 | 3 | 3 | 8 | 0 | 1 | 1 | 3 | 0 | 2 | 64 | 27 | 48 | 18 | 21 | 23 |
Mitochondria | 13 | 8 | 6 | 52 | 55 | 268 | 316 | 288 | 313 | 418 | 309 | 307 | 0 | 0 | 0 | 21 | 11 | 4 | 17 | 9 | 22 | 17 | 20 | 13 |
Nucleus | 0 | 1 | 0 | 0 | 0 | 1 | 1 | 2 | 3 | 0 | 1 | 0 | 1 | 0 | 3 | 2 | 5 | 2 | 2 | 0 | 0 | 0 | 0 | 0 |
Nuclear Periphery | 0 | 0 | 0 | 0 | 0 | 2 | 0 | 3 | 5 | 9 | 6 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleolus | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Peroxisomes | 1 | 0 | 2 | 11 | 6 | 0 | 5 | 1 | 0 | 4 | 3 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 3 | 1 | 0 | 0 |
SpindlePole | 0 | 1 | 2 | 0 | 1 | 0 | 0 | 4 | 0 | 2 | 1 | 0 | 2 | 0 | 0 | 3 | 2 | 2 | 0 | 0 | 0 | 0 | 0 | 0 |
Vac/Vac Membrane | 3 | 0 | 4 | 0 | 1 | 2 | 6 | 9 | 2 | 4 | 1 | 3 | 0 | 0 | 0 | 0 | 0 | 2 | 6 | 7 | 0 | 5 | 5 | 4 |
Unique Cell Count | 443 | 352 | 407 | 163 | 264 | 416 | 458 | 447 | 429 | 519 | 402 | 397 | 375 | 194 | 226 | 276 | 133 | 87 | 556 | 391 | 506 | 253 | 294 | 306 |
Labelled Cell Count | 581 | 450 | 585 | 232 | 358 | 587 | 591 | 604 | 625 | 675 | 562 | 540 | 439 | 229 | 264 | 339 | 158 | 103 | 556 | 391 | 506 | 253 | 294 | 306 |
Screen | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | AF100 | AF140 | AF180 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Mean Cell GFP Intensity (1e-4) | 8.9 | 9.1 | 7.6 | 6.6 | 6.6 | 5.4 | 5.5 | 5.4 | 5.6 | 5.0 | 5.3 | 5.3 | 9.0 | 9.4 | 9.7 | 7.4 | 8.5 | 9.4 | 9.0 | 9.6 | 10.4 |
Std Deviation (1e-4) | 0.9 | 1.2 | 1.0 | 0.9 | 1.0 | 1.0 | 1.1 | 1.3 | 0.9 | 1.0 | 1.2 | 1.0 | 0.9 | 1.1 | 1.1 | 1.0 | 1.4 | 1.7 | 1.2 | 1.5 | 1.5 |
Intensity Change (Log2) | – | – | – | -0.19 | -0.2 | -0.47 | -0.47 | -0.47 | -0.44 | -0.59 | -0.51 | -0.51 | 0.24 | 0.31 | 0.36 | -0.04 | 0.18 | 0.32 | 0.25 | 0.34 | 0.46 |
Localization | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Cortical Patches | -4.1 | -6.3 | -11.0 | -14.0 | -10.1 | -10.3 | -13.9 | -9.6 | -10.7 | -8.8 | -7.3 | -8.8 | -3.1 | -5.3 | -5.2 |
Bud | 1.1 | -0.5 | 0.3 | 0.6 | 0.5 | 0.1 | 0.7 | 1.5 | 1.8 | -0.2 | 0 | 0 | 2.0 | 0 | 0 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cell Periphery | -0.1 | 0.3 | -4.5 | -3.3 | -3.7 | -2.0 | -3.7 | -1.2 | -2.8 | 0.5 | -0.8 | -0.3 | 1.1 | -0.5 | 3.2 |
Cytoplasm | -0.9 | -3.8 | -3.5 | -2.1 | -4.2 | -3.6 | -5.0 | -4.7 | -6.4 | 4.8 | 9.0 | 9.8 | 9.9 | 10.1 | 7.9 |
Endoplasmic Reticulum | -3.8 | 1.1 | -2.9 | -8.5 | -7.3 | -5.8 | -10.6 | -9.3 | -8.1 | -0.9 | -4.0 | -4.6 | -13.8 | -10.1 | -9.0 |
Endosome | 0.6 | -0.1 | -3.1 | -2.3 | -1.5 | -4.3 | -4.0 | -3.8 | -3.5 | -4.6 | -3.3 | -3.6 | -2.9 | -1.5 | 0 |
Golgi | 0 | 1.5 | -1.9 | -2.1 | -2.0 | -0.8 | -2.6 | -2.1 | -0.6 | -3.2 | 0 | 0 | -1.5 | 0 | 0 |
Mitochondria | 10.9 | 8.5 | 19.2 | 20.5 | 19.3 | 21.3 | 24.0 | 22.0 | 22.1 | 0 | 0 | 0 | 4.0 | 0 | 0 |
Nucleus | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nuclear Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleolus | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Peroxisomes | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Vacuole | 0 | 0 | 0 | 0 | 1.2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
R1 | R2 | R3 | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Concentration | 5.2002 | 6.0742 | 5.5051 | 5.1601 | 5.2337 | 5.5666 | 8.1394 | 8.3793 | 8.3267 | 8.2394 | 8.4924 | 8.1902 | 7.8687 | 8.6017 | 8.5624 | 7.9378 | 7.6534 | 8.4169 |
Actin | 0.1481 | 0.1165 | 0.1445 | 0.1468 | 0.0793 | 0.0983 | 0.228 | 0.1371 | 0.1433 | 0.1824 | 0.1599 | 0.1089 | 0.1512 | 0.1333 | 0.1649 | 0.1185 | 0.2779 | 0.1491 |
Bud | 0.0017 | 0.0071 | 0.0012 | 0.0013 | 0.0004 | 0.0008 | 0.0009 | 0.0013 | 0.0025 | 0.0015 | 0.0007 | 0.0006 | 0.0003 | 0.0005 | 0.0005 | 0.0009 | 0.0003 | 0.0003 |
Bud Neck | 0.0032 | 0.0019 | 0.0037 | 0.0037 | 0.0015 | 0.0139 | 0.0019 | 0.0019 | 0.0024 | 0.0071 | 0.002 | 0.009 | 0.0018 | 0.0023 | 0.0018 | 0.0047 | 0.0079 | 0.0065 |
Bud Periphery | 0.0027 | 0.0027 | 0.0013 | 0.0039 | 0.0003 | 0.0013 | 0.0009 | 0.0013 | 0.0027 | 0.0019 | 0.0009 | 0.0012 | 0.0004 | 0.0004 | 0.0007 | 0.0018 | 0.0003 | 0.0004 |
Bud Site | 0.0129 | 0.0157 | 0.0066 | 0.0012 | 0.0007 | 0.0032 | 0.0026 | 0.0173 | 0.0099 | 0.002 | 0.0005 | 0.001 | 0.0012 | 0.0138 | 0.0013 | 0.0031 | 0.0012 | 0.0006 |
Cell Periphery | 0.0021 | 0.0048 | 0.0021 | 0.0037 | 0.0004 | 0.0027 | 0.0024 | 0.0043 | 0.0046 | 0.0039 | 0.0007 | 0.0021 | 0.0087 | 0.0023 | 0.0043 | 0.0063 | 0.0017 | 0.0023 |
Cytoplasm | 0.1116 | 0.2809 | 0.1564 | 0.1158 | 0.1355 | 0.2283 | 0.1508 | 0.2594 | 0.1547 | 0.2028 | 0.1368 | 0.1847 | 0.1565 | 0.1772 | 0.1009 | 0.2044 | 0.171 | 0.1417 |
Cytoplasmic Foci | 0.0776 | 0.0855 | 0.0756 | 0.0621 | 0.0934 | 0.0856 | 0.0863 | 0.0816 | 0.0909 | 0.0568 | 0.0645 | 0.0857 | 0.0738 | 0.0832 | 0.0706 | 0.0484 | 0.0571 | 0.0666 |
Eisosomes | 0.0014 | 0.0008 | 0.0007 | 0.0007 | 0.0001 | 0.0007 | 0.001 | 0.0018 | 0.0014 | 0.0008 | 0.0006 | 0.0004 | 0.0025 | 0.0005 | 0.0016 | 0.001 | 0.0008 | 0.0013 |
Endoplasmic Reticulum | 0.0895 | 0.0818 | 0.079 | 0.1814 | 0.0683 | 0.1138 | 0.0426 | 0.0554 | 0.0365 | 0.0924 | 0.145 | 0.0969 | 0.0519 | 0.1336 | 0.0785 | 0.1319 | 0.16 | 0.134 |
Endosome | 0.1419 | 0.1189 | 0.1382 | 0.1501 | 0.1646 | 0.1356 | 0.129 | 0.098 | 0.1336 | 0.1196 | 0.106 | 0.1266 | 0.0663 | 0.1053 | 0.107 | 0.0845 | 0.0353 | 0.0841 |
Golgi | 0.2972 | 0.2488 | 0.3459 | 0.2785 | 0.4121 | 0.2786 | 0.2788 | 0.2731 | 0.3633 | 0.2702 | 0.2669 | 0.3265 | 0.4098 | 0.3046 | 0.4352 | 0.3592 | 0.2621 | 0.3857 |
Lipid Particles | 0.0312 | 0.0126 | 0.0143 | 0.0215 | 0.0224 | 0.0134 | 0.0175 | 0.0146 | 0.0239 | 0.0078 | 0.0141 | 0.0261 | 0.0392 | 0.0268 | 0.0236 | 0.0132 | 0.0166 | 0.0156 |
Mitochondria | 0.0209 | 0.0109 | 0.0134 | 0.0192 | 0.0067 | 0.0073 | 0.0072 | 0.0078 | 0.009 | 0.0047 | 0.0122 | 0.0089 | 0.0026 | 0.003 | 0.0033 | 0.0069 | 0.0014 | 0.0045 |
None | 0.0087 | 0.0052 | 0.0029 | 0.0008 | 0.0008 | 0.0024 | 0.0072 | 0.0366 | 0.0095 | 0.0403 | 0.003 | 0.0144 | 0.0136 | 0.0018 | 0.0017 | 0.0072 | 0.0008 | 0.0026 |
Nuclear Periphery | 0.0054 | 0.0014 | 0.0022 | 0.0035 | 0.0012 | 0.0041 | 0.0134 | 0.0017 | 0.0016 | 0.0012 | 0.0647 | 0.0009 | 0.0009 | 0.0053 | 0.001 | 0.0018 | 0.0009 | 0.0012 |
Nucleolus | 0.001 | 0.0001 | 0.0001 | 0 | 0.0001 | 0.0005 | 0.0005 | 0.0002 | 0.0001 | 0 | 0.0003 | 0.0001 | 0.0002 | 0.0001 | 0 | 0.0001 | 0 | 0 |
Nucleus | 0.0188 | 0.0004 | 0.0005 | 0.0004 | 0.0003 | 0.0012 | 0.0158 | 0.0014 | 0.0005 | 0.0003 | 0.0059 | 0.0003 | 0.0003 | 0.0006 | 0.0001 | 0.0004 | 0.0001 | 0.0002 |
Peroxisomes | 0.0095 | 0.0014 | 0.006 | 0.0013 | 0.0075 | 0.0034 | 0.006 | 0.0016 | 0.0057 | 0.0009 | 0.0069 | 0.002 | 0.0074 | 0.0017 | 0.0011 | 0.0014 | 0.0035 | 0.0017 |
Punctate Nuclear | 0.0087 | 0.0005 | 0.0008 | 0.0005 | 0.0019 | 0.001 | 0.0029 | 0.0007 | 0.0007 | 0.0003 | 0.0044 | 0.0004 | 0.0099 | 0.0008 | 0.0003 | 0.0004 | 0.0003 | 0.0003 |
Vacuole | 0.0041 | 0.0017 | 0.0029 | 0.0021 | 0.0015 | 0.0027 | 0.0023 | 0.0024 | 0.0021 | 0.0022 | 0.0014 | 0.0024 | 0.001 | 0.0018 | 0.0008 | 0.0026 | 0.0006 | 0.0008 |
Vacuole Periphery | 0.0018 | 0.0006 | 0.0014 | 0.0015 | 0.001 | 0.0013 | 0.0017 | 0.0008 | 0.0011 | 0.0009 | 0.0025 | 0.0009 | 0.0005 | 0.0011 | 0.0007 | 0.0013 | 0.0003 | 0.0006 |
R1 | R2 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Gene Expression | 28.9376 | 24.7438 | 29.4888 | 28.0325 | 29.6345 | 31.8557 | 32.884 | 36.202 | 28.4459 | 34.1362 |
Translational Efficiency | 0.6851 | 0.9636 | 0.7054 | 0.6062 | 0.6022 | 0.6084 | 0.6835 | 0.5308 | 0.6336 | 0.5663 |
Dataset | Hit |
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Protein Concentration | ✘ |
Protein Localization | ✘ |
Gene Expression | ✘ |
Translational Efficiency | ✘ |
Temp | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Vph1-GFP) |
---|---|---|---|---|
37℃ | ||||
RT |
Gene / Allele | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Sac6-tdTomato) |
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Gene | Images |
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Gene | Images |
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