Standard name
Human Ortholog
Description Protein of unknown function; expression is regulated by phosphate levels; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery and vacuole; protein abundance increases in response to DNA replication stress
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Micrographs

ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0 – – 0 0 0 0 0 0 0
Bud 0 0 0 0 0 0 – 0 0.05 0.05 0.05 0.05 0 0 0 – – 0 0 0 0 0 0 0
Bud Neck 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0 – – 0 0 0 0 0 0 0
Bud Site 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0 – – 0 – – – – – –
Cell Periphery 0 0 0 0 0 0 – 0 0 0 0 0 0 0.06 0.05 – – 0 0 0 0 0 0 0
Cytoplasm 0.97 0.93 0.92 0.95 0.92 0.86 – 0.8 0.75 0.73 0.7 0.69 0.96 0.95 0.95 – – 0.96 0.79 0.73 0.44 0.62 0.68 0.72
Endoplasmic Reticulum 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0 – – 0 0 0 0 0 0 0
Endosome 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0 – – 0 0 0 0 0 0 0
Golgi 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0 – – 0 0 0 0 0 0 0
Mitochondria 0 0.09 0 0 0 0.19 – 0.19 0.27 0.28 0.33 0.24 0 0 0 – – 0 0.05 0.07 0.11 0.12 0.09 0.05
Nucleus 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0 – – 0 0 0 0 0 0 0
Nuclear Periphery 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0 – – 0 0 0 0 0 0 0
Nucleolus 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0 – – 0 0 0 0 0 0 0
Peroxisomes 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0 – – 0 0 0 0 0 0 0
SpindlePole 0 0 0 0 0 0 – 0 0 0 0 0 0 0 0 – – 0 0 0 0 0 0 0
Vac/Vac Membrane 0 0 0.08 0 0.05 0 – 0 0 0.07 0.07 0.1 0 0 0 – – 0 0.07 0.06 0.28 0.11 0.08 0.09
ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0 0 0 0 0 0 – 2 11 7 11 11 1 3 3 – – 1 4 4 11 1 5 3
Bud 0 2 0 7 3 17 – 15 33 45 38 48 0 5 1 – – 0 2 2 11 1 8 7
Bud Neck 3 1 1 2 2 3 – 3 3 4 0 3 0 2 2 – – 2 4 0 9 2 2 5
Bud Site 0 0 0 0 0 0 – 1 1 2 1 4 0 0 1 – – 0 – – – – – –
Cell Periphery 2 6 4 9 4 5 – 11 22 27 20 24 3 11 11 – – 6 1 3 4 2 3 4
Cytoplasm 341 161 455 485 607 611 – 693 539 679 555 650 77 187 211 – – 281 275 121 216 61 151 183
Endoplasmic Reticulum 0 4 1 0 0 3 – 7 8 8 10 11 0 2 2 – – 13 2 1 9 1 4 2
Endosome 0 0 2 3 11 4 – 18 10 9 6 9 0 0 0 – – 1 2 1 16 1 2 4
Golgi 4 0 3 1 0 0 – 0 0 2 0 1 0 0 0 – – 0 3 0 2 0 0 0
Mitochondria 5 16 7 18 16 131 – 162 196 260 261 229 0 0 0 – – 8 17 12 55 12 20 11
Nucleus 0 0 3 2 3 2 – 8 4 7 11 20 1 1 0 – – 3 1 0 0 0 0 0
Nuclear Periphery 0 0 5 1 4 0 – 7 9 14 13 13 0 0 0 – – 0 0 0 0 0 0 0
Nucleolus 0 0 0 0 1 0 – 4 1 1 2 5 0 0 0 – – 0 0 0 0 0 0 0
Peroxisomes 0 0 0 0 1 3 – 7 2 6 0 7 0 0 0 – – 0 0 0 0 0 0 1
SpindlePole 0 0 1 5 7 11 – 14 18 20 15 26 0 0 1 – – 0 1 0 5 0 1 4
Vac/Vac Membrane 4 1 40 13 35 15 – 28 23 66 59 95 0 0 1 – – 9 25 10 139 10 18 24
Unique Cell Count 352 173 493 512 660 707 867 714 935 796 948 80 196 223 292 350 167 490 100 224 255
Labelled Cell Count 359 191 522 546 694 805 980 880 1157 1002 1156 82 211 233 324 350 167 490 100 224 255


Cell Periphery, Vacuole

(Huh et al. Nature 2003 425:686)
Screen WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 AF100 AF140 AF180
Mean Cell GFP Intensity (1e-4) 3.9 3.2 4.0 3.9 4.1 3.3 – 3.6 3.5 3.6 3.8 4.0 5.1 5.3 5.4 4.1 4.6 5.4 4.8 5.7 6.0
Std Deviation (1e-4) 0.9 0.8 1.7 1.5 2.1 1.6 – 1.4 1.4 1.7 1.9 2.2 1.1 1.3 1.8 1.5 1.7 2.1 1.3 5.2 3.8
Intensity Change (Log2) – – – -0.02 0.03 -0.26 – -0.15 -0.21 -0.15 -0.06 -0.01 0.34 0.42 0.43 0.03 0.21 0.43 0.27 0.52 0.58


Localization RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3
Actin – – – – – – – – – – – – – – –
Bud – – – – – – – – – – – – – – 0
Bud Neck – – – – – – – – – – – – – – 0
Bud Site – – – – – – – – – – – – – – 0
Cell Periphery – – – – – – – – – – – – – – 0
Cyto – – – – – – – – – – – – – – –
Endoplasmic Reticulum – – – – – – – – – – – – – – 0
Endosome – – – – – – – – – – – – – – 0
Golgi – – – – – – – – – – – – – – 0
Mitochondria – – – – – – – – – – – – – – 0
Nuclear Periphery – – – – – – – – – – – – – – 0
Nuc – – – – – – – – – – – – – – –
Nucleolus – – – – – – – – – – – – – – 0
Peroxisomes – – – – – – – – – – – – – – 0
SpindlePole – – – – – – – – – – – – – – 0
Vac – – – – – – – – – – – – – – –
Cortical Patches – – – – – – – – – – – – – – 0
Cytoplasm – – – – – – – – – – – – – – 0
Nucleus – – – – – – – – – – – – – – 0
Vacuole – – – – – – – – – – – – – – -2.8

Images

Circle plot not available

Protein Concentration and Protein Localization Data

R1 R2 R3
G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase
Concentration 1.0017 1.665 0.8846 0.3757 1.3208 1.0799 1.0586 1.2642 0.9237 0.7183 0.486 0.9344 1.1576 0.8466 0.7204 2.616 0.9674 0.8964
Actin 0.0032 0.0005 0.0077 0.0011 0.0022 0.0038 0.0504 0.0021 0.0108 0.0014 0.0058 0.0013 0.0825 0.001 0.0248 0.0002 0.0009 0.0005
Bud 0.0031 0.0045 0.008 0.0083 0.0055 0.0036 0.0051 0.0041 0.0028 0.0011 0.0008 0.009 0.0014 0.0023 0.0038 0.0015 0.0006 0.0006
Bud Neck 0.0014 0.0019 0.0096 0.0086 0.0079 0.0343 0.0214 0.0014 0.0065 0.0015 0.0002 0.004 0.0027 0.0006 0.0044 0.0017 0.0015 0.007
Bud Periphery 0.0152 0.0103 0.0395 0.0251 0.0644 0.0479 0.0165 0.0126 0.0137 0.0072 0.0011 0.0111 0.0022 0.006 0.0199 0.019 0.008 0.0042
Bud Site 0.0104 0.0523 0.0435 0.0034 0.0033 0.0031 0.0326 0.0513 0.0152 0.0012 0.0007 0.0011 0.0272 0.0107 0.0285 0.0066 0.0011 0.0006
Cell Periphery 0.1457 0.0954 0.0862 0.0587 0.1939 0.1234 0.013 0.0183 0.0284 0.0076 0.0005 0.0069 0.0621 0.0392 0.0544 0.1689 0.0843 0.0378
Cytoplasm 0.2448 0.2381 0.1903 0.2648 0.1397 0.301 0.0715 0.2312 0.1539 0.243 0.1501 0.1935 0.2139 0.2916 0.3146 0.1865 0.2441 0.3294
Cytoplasmic Foci 0.0142 0.0122 0.0142 0.0125 0.011 0.0162 0.0387 0.0137 0.0242 0.019 0.0259 0.0206 0.0396 0.0196 0.0144 0.0017 0.0091 0.0051
Eisosomes 0.0012 0.0002 0.0012 0.0003 0.0004 0.0004 0.0013 0.0008 0.0005 0.0003 0.0003 0.0002 0.0009 0.0001 0.0009 0.0001 0.0001 0.0001
Endoplasmic Reticulum 0.0086 0.008 0.0111 0.0085 0.004 0.0084 0.0049 0.0085 0.0047 0.0045 0.0013 0.002 0.0054 0.01 0.017 0.002 0.003 0.0018
Endosome 0.0165 0.0311 0.0159 0.0305 0.0372 0.0125 0.0338 0.0395 0.0293 0.0542 0.0297 0.0214 0.0312 0.0387 0.0306 0.0134 0.0742 0.0114
Golgi 0.0012 0.0009 0.0009 0.0008 0.0017 0.0007 0.0147 0.0014 0.0032 0.0005 0.0029 0.0015 0.0092 0.0018 0.0019 0.0001 0.0023 0.0001
Lipid Particles 0.0059 0.0025 0.005 0.0038 0.0029 0.0026 0.0368 0.0029 0.0065 0.0022 0.0041 0.0123 0.0164 0.0099 0.0109 0.0008 0.0015 0.0008
Mitochondria 0.0028 0.0012 0.0018 0.001 0.0006 0.0008 0.0188 0.0021 0.0144 0.0013 0.0129 0.0031 0.0048 0.0061 0.0057 0.0002 0.0002 0.0001
None 0.4883 0.4465 0.4985 0.5269 0.5104 0.3967 0.5544 0.528 0.6052 0.539 0.6471 0.6186 0.3053 0.4644 0.392 0.4352 0.5012 0.5751
Nuclear Periphery 0.0013 0.0016 0.0019 0.0031 0.0007 0.0009 0.0198 0.0022 0.0026 0.0027 0.0016 0.0009 0.0025 0.0013 0.0013 0.0013 0.0005 0.0002
Nucleolus 0.0011 0.0006 0.0008 0.001 0.0003 0.0004 0.0034 0.0018 0.001 0.0006 0.0007 0.0004 0.0011 0.0007 0.0009 0.0006 0.0001 0.0001
Nucleus 0.001 0.0024 0.004 0.0037 0.0011 0.0012 0.0048 0.0029 0.0025 0.0032 0.0013 0.0015 0.0017 0.0018 0.001 0.0025 0.0004 0.0003
Peroxisomes 0.0006 0.0001 0.0007 0.0005 0.0002 0.0002 0.0209 0.0007 0.0067 0.0003 0.008 0.0014 0.0342 0.0003 0.0016 0 0.0001 0
Punctate Nuclear 0.0005 0.0004 0.0007 0.0033 0.0004 0.0004 0.0081 0.0012 0.0017 0.0011 0.0023 0.0011 0.0405 0.0004 0.0007 0.0001 0.0001 0.0001
Vacuole 0.032 0.0856 0.0566 0.0319 0.0117 0.04 0.0249 0.0682 0.056 0.1 0.0967 0.0827 0.1113 0.0885 0.0543 0.1493 0.0622 0.0241
Vacuole Periphery 0.0011 0.0037 0.0019 0.0022 0.0004 0.0015 0.0041 0.0052 0.0102 0.008 0.0059 0.0053 0.0038 0.0052 0.0163 0.0084 0.0048 0.0005

Sequencing Data

R1 R2
G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Post-START S/G2 Metaphase Anaphase Telophase
Gene Expression 2.2246 0.6629 0.4919 1.0326 0.4807 2.5939 1.1729 1.244 1.5349 1.2418
Translational Efficiency – – – – – – – – – –

Hit Data

Dataset Hit
Protein Concentration ✘
Protein Localization ✘
Gene Expression ✘
Translational Efficiency –

Micrographs

Cell Count

R1 R2 R1 & R2
WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14
121 733 671 1307 2149 266 849 1953 2270 999 1520 3260

Protein Abundance

R1 R2 R1 & R2
WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14
Mean 908.00 662.10 816.62 835.68 617.16 742.51 833.72 809.60 632.66 683.51 826.17 820.06
Standard Deviation 217.56 105.67 101.28 135.78 78.40 95.05 114.02 128.07 112.30 108.91 108.91 131.83
Intensity Change Log 2 — -0.455643 -0.153027 -0.119742 — 0.266766 0.433918 0.391565 — -0.118791 0.113803 0.109373

Localization Score (DeepLoc)

R1 R2 R1 & R2
WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14 WT UBP2 UBP14 UBP2UBP14
Actin 0.000887 0.000233 0.000372 0.007757 0.000404 0.000347 0.003199 0.002831 0.000430 0.000263 0.001951 0.004806
Bud Neck 0.007154 0.040510 0.002708 0.015127 0.047359 0.035166 0.012528 0.017455 0.045216 0.039087 0.008193 0.016521
Bud Site 0.049436 0.010831 0.006458 0.071043 0.015911 0.008891 0.036016 0.040963 0.017698 0.010314 0.022968 0.053023
Cell Periphery 0.000434 0.000201 0.002217 0.004857 0.000610 0.000188 0.008737 0.004863 0.000601 0.000198 0.005859 0.004861
Cytoplasm 0.212758* 0.379507* 0.340471* 0.459928* 0.403221* 0.284532* 0.373155* 0.510259* 0.393069* 0.354218* 0.358727* 0.490080*
Cytoplasmic Foci 0.050767 0.270175* 0.019965 0.030840 0.263007* 0.336231* 0.026157 0.028356 0.251694* 0.287763* 0.023424 0.029352
Eisosomes 0.000080 0.000195 0.000103 0.001044 0.001048 0.000276 0.000967 0.000643 0.000996 0.000216 0.000586 0.000803
Endoplasmic Reticulum 0.003541 0.000593 0.003621 0.003006 0.001366 0.000725 0.006624 0.002642 0.001482 0.000628 0.005298 0.002788
Endosome 0.034007 0.037507 0.002592 0.004865 0.018076 0.044850 0.003094 0.005385 0.018925 0.039462 0.002872 0.005176
Golgi 0.010970 0.003618 0.000105 0.001509 0.008950 0.015998 0.000217 0.000578 0.009057 0.006914 0.000168 0.000951
Lipid Particles 0.002196 0.010841 0.001992 0.003838 0.015860 0.016779 0.003033 0.001992 0.015132 0.012422 0.002573 0.002732
Mitochondria 0.007948 0.009129 0.000332 0.001885 0.010412 0.024268 0.000895 0.001156 0.010280 0.013160 0.000646 0.001448
Mitotic Spindle 0.003377 0.005265 0.002709 0.020878 0.000840 0.006544 0.002496 0.008248 0.000975 0.005606 0.002590 0.013311
None 0.000477 0.009157 0.004468 0.003152 0.007787 0.000837 0.002839 0.006045 0.007397 0.006941 0.003558 0.004885
Nuclear Periphery 0.000940 0.000477 0.001323 0.000798 0.000250 0.000456 0.001210 0.000700 0.000286 0.000472 0.001260 0.000739
Nuclear Periphery Foci 0.001152 0.000539 0.001465 0.001290 0.000378 0.000288 0.001904 0.001077 0.000419 0.000472 0.001710 0.001163
Nucleolus 0.000312 0.006086 0.000459 0.000290 0.001789 0.001929 0.000352 0.000702 0.001710 0.004979 0.000400 0.000537
Nucleus 0.069381 0.104319 0.557862* 0.160316* 0.110180 0.114455 0.400359* 0.201243* 0.108006 0.107018 0.469889* 0.184834*
Peroxisomes 0.001618 0.019443 0.000411 0.001960 0.011034 0.029977 0.000829 0.001257 0.010532 0.022248 0.000645 0.001538
Vacuole 0.531064* 0.088522 0.050229 0.203602* 0.079929 0.071962 0.115164 0.161912 0.103976 0.084112 0.086499 0.178627
Vacuole Periphery 0.011499 0.002854 0.000139 0.002018 0.001590 0.005302 0.000225 0.001695 0.002118 0.003506 0.000187 0.001824

Localization Changes (T-score)

R1 R2 R1 & R2
UBP2_WT UBP14_WT UBP2UBP14_WT UBP2UBP14_UBP2 UBP2UBP14_UBP14 UBP2_WT UBP14_WT UBP2UBP14_WT UBP2UBP14_UBP2 UBP2UBP14_UBP14 UBP2_WT UBP14_WT UBP2UBP14_WT UBP2UBP14_UBP2 UBP2UBP14_UBP14
Actin 1.85 1.21 -4.07 -5.07 -4.82 0.63 -1.79 -3.08 -3.15 0.04 3.49 -1.75 -5.42 -5.77 -2.00
Bud Neck -8.83 3.13 -2.56 7.94 -6.88 2.17 14.35 13.33 3.18 -2.92 2.06 17.43 14.79 7.88 -5.53
Bud Site 2.64 2.99 0.12 -7.78 -8.59 2.20 -2.70 -6.59 -6.57 -1.58 3.78 -0.19 -7.87 -10.88 -6.09
Cell Periphery 1.59 -0.98 -2.91 -3.22 -0.44 4.89 -2.96 -3.77 -4.30 1.11 4.73 -2.97 -4.53 -5.30 0.69
Cytoplasm -6.43 -3.93 -7.69 -1.84 -6.75 7.10 6.73 -9.62 -11.95 -13.94 4.02 8.07 -7.68 -9.76 -15.17
Cytoplasmic Foci -19.64 3.69 3.12 29.48 -2.20 -4.90 47.60 47.93 22.31 -1.98 -4.28 47.94 47.65 36.46 -2.99
Eisosomes -4.27 -0.64 -3.83 -2.86 -3.62 5.88 1.41 3.50 -2.73 0.75 6.32 3.26 3.40 -4.33 -0.64
Endoplasmic Reticulum 2.25 -1.02 0.44 -10.36 4.25 1.42 -6.73 -2.09 -3.23 5.03 2.66 -8.12 -2.83 -7.02 6.24
Endosome -1.36 4.32 4.25 12.14 -0.81 -4.69 16.30 13.14 7.23 -2.73 -7.65 17.02 15.11 13.88 -2.81
Golgi 1.20 1.99 1.84 5.70 -2.30 -1.60 14.31 13.65 3.78 -2.42 1.80 14.09 13.17 5.51 -3.29
Lipid Particles -7.41 -0.10 -0.59 6.61 -0.63 -0.20 14.42 15.80 5.79 3.94 2.22 14.91 14.89 9.56 1.48
Mitochondria -0.68 1.74 1.50 5.95 -3.96 -2.38 10.62 10.22 4.18 -0.75 -1.30 11.05 10.38 6.78 -2.55
Mitotic Spindle -1.32 0.34 -5.14 -4.12 -5.37 -2.19 -1.37 -4.82 -0.39 -3.68 -3.60 -1.40 -7.83 -3.18 -6.43
None -4.45 -4.90 -5.45 3.48 1.91 6.15 4.44 2.03 -4.95 -2.68 0.17 3.86 2.92 2.04 -1.43
Nuclear Periphery 1.96 -3.14 -2.22 -12.06 2.28 -2.24 -19.14 -10.15 -4.52 8.07 -3.58 -23.22 -15.79 -10.80 7.83
Nuclear Periphery Foci 1.55 -1.80 -0.64 -7.37 2.40 0.86 -4.84 -1.41 -2.40 2.68 0.14 -5.46 -2.24 -3.51 3.34
Nucleolus -4.20 -2.78 0.05 4.20 3.69 -0.22 5.46 4.08 2.84 -2.06 -3.29 5.29 4.75 4.36 -1.10
Nucleus -0.13 -20.76 -4.04 -9.93 29.42 -0.42 -30.79 -17.41 -8.97 19.94 0.35 -45.74 -18.80 -15.30 33.77
Peroxisomes -9.66 3.06 0.99 9.90 -2.03 -3.54 15.51 14.10 5.52 -0.85 -5.75 16.40 14.99 10.89 -1.69
Vacuole 13.09 13.57 6.53 -22.01 -23.58 0.55 -8.36 -18.11 -13.41 -6.15 2.59 -1.64 -21.53 -23.88 -19.37
Vacuole Periphery 1.87 2.66 2.40 2.16 -1.96 -2.00 9.83 0.69 2.12 -3.11 -1.87 8.02 2.29 2.93 -3.67
Standard name
Human Ortholog
Description Protein of unknown function; expression is regulated by phosphate levels; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery and vacuole; protein abundance increases in response to DNA replication stress
Localization
Cell Percentages cytoplasm (20%), vacuole (5%), mixed (28%)
Cell Cycle Regulation No
Subcompartmental Group N/A

Phm7

Phm7


Nearest neighbours ( genes)

correlation threshold

0.6

1.0

0.80


Biological Process (Gene Ontology)
Molecular Function (Gene Ontology)
Cellular Component (Gene Ontology)

Endocytosis
Temp Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Vph1-GFP)
37℃
RT
Cell Cycle Omics

CYCLoPs (Phm7-GFP)
Gene / Allele Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Sac6-tdTomato)
Gene Images
Gene Images
Images are not yet available
Images are not yet available