Standard name
Human Ortholog
Description Protein required for beta-1,6 glucan biosynthesis; mutations result in aberrant morphology and severe growth defects
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Micrographs

ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Neck 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Site 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 – – – – – –
Cell Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cytoplasm 0.7 0.77 0.9 0.97 0.95 0.93 0.87 0.9 0.84 0.88 0.81 0.85 0.98 0.98 0.98 0.64 0.6 0.63 0.12 0.11 0.17 0.18 0.15 0.19
Endoplasmic Reticulum 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.05 0 0 0 0 0 0 0 0
Endosome 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.05 0 0.07 0 0 0 0 0 0
Golgi 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Mitochondria 0 0 0 0.08 0 0.09 0.16 0.15 0.24 0.2 0.28 0.25 0 0 0 0 0 0 0 0 0 0 0 0.05
Nucleus 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.06 0 0 0 0 0 0 0 0
Nuclear Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nucleolus 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Peroxisomes 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
SpindlePole 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Vac/Vac Membrane 0.41 0.33 0.1 0 0 0.05 0.07 0.06 0.05 0.09 0.07 0.1 0 0 0 0.46 0.49 0.48 0.77 0.8 0.73 0.73 0.7 0.67
ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 2 0
Bud 0 0 3 4 0 5 0 7 3 4 0 3 0 1 1 0 0 0 2 5 1 2 2 0
Bud Neck 0 0 4 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 3 0 1 1
Bud Site 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 – – – – – –
Cell Periphery 0 1 0 0 0 1 2 0 1 2 0 0 0 1 1 0 0 0 0 0 0 0 0 0
Cytoplasm 202 476 336 193 224 255 398 475 362 455 185 234 258 284 308 263 128 164 37 73 67 34 31 44
Endoplasmic Reticulum 2 3 1 0 0 1 0 0 0 1 3 0 0 1 0 19 7 5 2 3 2 3 4 6
Endosome 12 6 0 0 0 0 0 0 0 0 0 0 3 1 2 20 7 18 11 13 4 1 4 4
Golgi 2 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 3 0 2 2 0 0 3 1
Mitochondria 2 9 12 15 10 25 75 77 104 104 65 69 0 1 3 11 3 7 7 14 17 5 8 12
Nucleus 11 6 0 0 1 0 11 3 2 2 2 1 0 0 1 24 9 10 1 1 0 0 0 0
Nuclear Periphery 0 1 1 0 0 1 4 5 0 1 1 0 1 0 1 0 0 0 0 1 0 0 0 0
Nucleolus 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0
Peroxisomes 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
SpindlePole 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 2 1 3 0 0 0 1
Vac/Vac Membrane 119 200 36 2 8 15 30 32 22 49 15 28 3 2 2 187 104 125 249 520 286 144 148 161
Unique Cell Count 287 615 374 199 236 274 460 525 431 518 229 276 264 289 315 409 212 261 323 653 391 198 212 239
Labelled Cell Count 350 703 394 214 244 304 520 599 496 619 271 335 265 291 319 526 262 331 323 653 391 198 212 239


Vacuole

(Huh et al. Nature 2003 425:686)
Screen WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 AF100 AF140 AF180
Mean Cell GFP Intensity (1e-4) 5.5 4.1 3.4 3.4 3.7 3.4 3.3 3.4 2.9 3.0 3.0 3.0 4.9 4.5 3.9 6.7 7.4 6.9 4.9 5.6 5.4
Std Deviation (1e-4) 0.7 0.7 0.6 1.1 0.9 0.7 0.8 1.0 0.4 0.8 0.4 0.9 5.0 1.2 1.1 1.9 2.0 2.0 1.8 2.2 1.5
Intensity Change (Log2) – – – 0.0 0.12 0.01 -0.04 -0.01 -0.22 -0.17 -0.2 -0.21 0.53 0.41 0.2 0.99 1.12 1.02 0.53 0.71 0.66


Localization RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3
Actin – – – – – – – – – – – – – – –
Bud – – – – – – – – – – – – 0 0 0
Bud Neck – – – – – – – – – – – – 0 0 0
Bud Site – – – – – – – – – – – – 0 0 0
Cell Periphery – – – – – – – – – – – – 0 0 0
Cyto – – – – – – – – – – – – – – –
Endoplasmic Reticulum – – – – – – – – – – – – 0 0 0
Endosome – – – – – – – – – – – – 0 0 0
Golgi – – – – – – – – – – – – 0 0 0
Mitochondria – – – – – – – – – – – – 0 0 0
Nuclear Periphery – – – – – – – – – – – – 0 0 0
Nuc – – – – – – – – – – – – – – –
Nucleolus – – – – – – – – – – – – 0 0 0
Peroxisomes – – – – – – – – – – – – 0 0 0
SpindlePole – – – – – – – – – – – – 0 0 0
Vac – – – – – – – – – – – – – – –
Cortical Patches – – – – – – – – – – – – 0 0 0
Cytoplasm – – – – – – – – – – – – 0 0 0
Nucleus – – – – – – – – – – – – 0 0 0
Vacuole – – – – – – – – – – – – 11.2 10.8 10.9

Images

Circle plot not available

Protein Concentration and Protein Localization Data

R1 R2 R3
G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Pre-START G1 Post-START S/G2 Metaphase Anaphase Telophase
Concentration -0.1197 1.1288 0.5763 0.046 0.0136 0.6431 4.5601 3.929 4.2928 3.5922 4.0212 4.4909 3.8856 3.6577 4.041 3.5363 3.616 3.6369
Actin 0.0001 0.0002 0.0003 0.0001 0.0001 0.0002 0.0334 0.0002 0.0117 0.0005 0.0009 0.0042 0.0221 0.0054 0.0118 0.0039 0.0211 0.005
Bud 0 0.0001 0.0002 0.0002 0.0001 0.0001 0.0022 0.0043 0.0052 0.0006 0.0005 0.002 0.0029 0.0029 0.0021 0.0065 0.02 0.0062
Bud Neck 0.0001 0.0002 0.0002 0.0005 0.0005 0.0006 0.0092 0.0069 0.015 0.003 0.0044 0.0055 0.0014 0.0053 0.0013 0.0005 0.0008 0.0016
Bud Periphery 0 0.0001 0.0003 0.0002 0.0001 0.0002 0.0035 0.0068 0.0084 0.0012 0.0009 0.004 0.0022 0.0015 0.0028 0.0057 0.0057 0.0047
Bud Site 0.0002 0.0006 0.0005 0.0006 0.0002 0.0002 0.0173 0.0119 0.0181 0.0057 0.0024 0.0011 0.027 0.0148 0.0076 0.0015 0.0017 0.0013
Cell Periphery 0.0002 0.0004 0.0004 0.0003 0.0001 0.0002 0.0011 0.0008 0.0007 0.0005 0.0016 0.0005 0.0009 0.0012 0.0005 0.0004 0.0003 0.0003
Cytoplasm 0.1736 0.3534 0.3336 0.4366 0.3365 0.5117 0.1067 0.2501 0.1794 0.1619 0.1734 0.269 0.1134 0.2429 0.1599 0.0924 0.2681 0.2939
Cytoplasmic Foci 0.0109 0.0156 0.018 0.0317 0.0426 0.0142 0.0427 0.0279 0.0483 0.0582 0.0572 0.0504 0.0545 0.0438 0.0362 0.1073 0.0221 0.0509
Eisosomes 0.0003 0.0001 0.0001 0 0.0001 0.0001 0.0005 0.0001 0.0002 0.0001 0.0001 0.0001 0.0009 0.0002 0.0005 0.0002 0.0002 0.0003
Endoplasmic Reticulum 0.0035 0.004 0.0042 0.0033 0.0022 0.004 0.0052 0.0044 0.0043 0.0047 0.0017 0.005 0.0072 0.0046 0.003 0.0031 0.0017 0.0036
Endosome 0.0183 0.0199 0.0247 0.0608 0.0904 0.0164 0.0457 0.0541 0.0596 0.1033 0.1125 0.058 0.0601 0.0411 0.0268 0.2077 0.0615 0.0599
Golgi 0.0003 0.0003 0.0005 0.0014 0.001 0.0003 0.0086 0.0009 0.0081 0.004 0.0173 0.0034 0.0061 0.0021 0.0022 0.0035 0.0039 0.0016
Lipid Particles 0.0014 0.0009 0.0012 0.0007 0.0027 0.0009 0.0168 0.0016 0.0132 0.0267 0.0107 0.0028 0.0245 0.0058 0.0048 0.0049 0.0014 0.0043
Mitochondria 0.0002 0.0004 0.0006 0.0011 0.0008 0.0005 0.0084 0.0015 0.0126 0.0032 0.0171 0.0087 0.0024 0.0015 0.0046 0.0083 0.016 0.002
None 0.7701 0.5604 0.595 0.3876 0.4925 0.4121 0.575 0.527 0.5379 0.408 0.4574 0.477 0.6177 0.5474 0.6929 0.3759 0.5127 0.5084
Nuclear Periphery 0.001 0.0018 0.0013 0.001 0.0007 0.0016 0.0227 0.0025 0.0068 0.0052 0.0016 0.0029 0.015 0.0021 0.0027 0.0125 0.001 0.0023
Nucleolus 0.0002 0.0004 0.0003 0.0004 0.0003 0.0004 0.0022 0.0025 0.0023 0.0046 0.0019 0.0017 0.0017 0.0053 0.0013 0.003 0.0005 0.0008
Nucleus 0.001 0.003 0.0029 0.0019 0.0017 0.0046 0.0217 0.008 0.005 0.006 0.0063 0.0065 0.0025 0.009 0.0028 0.0058 0.0058 0.0027
Peroxisomes 0.0001 0.0002 0.0003 0.0003 0.0003 0.0002 0.0307 0.0004 0.0089 0.0295 0.0264 0.0083 0.009 0.0021 0.0041 0.0035 0.0067 0.001
Punctate Nuclear 0.0006 0.001 0.001 0.0005 0.0005 0.0021 0.0079 0.0024 0.0055 0.0052 0.0014 0.0032 0.0053 0.011 0.0054 0.0068 0.001 0.0026
Vacuole 0.0169 0.035 0.0131 0.0678 0.024 0.0281 0.0343 0.0818 0.0447 0.1574 0.0987 0.0812 0.0204 0.0479 0.0241 0.1339 0.0447 0.0415
Vacuole Periphery 0.0009 0.002 0.001 0.0029 0.0024 0.0013 0.0044 0.004 0.0041 0.0105 0.0056 0.0046 0.0027 0.0023 0.0025 0.0129 0.0033 0.0049

Sequencing Data

R1 R2
G1 Post-START S/G2 Metaphase Anaphase Telophase G1 Post-START S/G2 Metaphase Anaphase Telophase
Gene Expression 17.2323 11.5535 16.0747 17.8281 12.3931 7.2658 16.0015 19.2181 17.1482 19.4683
Translational Efficiency 0.5929 0.6763 0.6363 0.5016 0.5368 1.241 0.6118 0.3604 0.4536 0.4663

Hit Data

Dataset Hit
Protein Concentration ✘
Protein Localization ✘
Gene Expression ✘
Translational Efficiency ✘
Standard name
Human Ortholog
Description Protein required for beta-1,6 glucan biosynthesis; mutations result in aberrant morphology and severe growth defects
Localization
Cell Percentages vacuole (65%)
Cell Cycle Regulation No
Subcompartmental Group N/A

Kre5

Kre5


Nearest neighbours ( genes)

correlation threshold

0.6

1.0

0.80


Biological Process (Gene Ontology)
Molecular Function (Gene Ontology)
Cellular Component (Gene Ontology)

Endocytosis
Temp Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Vph1-GFP)
37℃
RT
Cell Cycle Omics

CYCLoPs (Kre5-GFP)
Gene / Allele Actin Patch (Sac6-tdTomato) Cortical Patch (Sla1-GFP) Late Endosome (Snf7-GFP) Vacuole (Sac6-tdTomato)
Gene Images
Gene Images
Images are not yet available
Images are not yet available