Standard name | |
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Human Ortholog | |
Description | Rab family GTPase; involved in the exocytic pathway; mediates intra-Golgi traffic or the budding of post-Golgi vesicles from the trans-Golgi; YPT31 has a paralog, YPT32, that arose from the whole genome duplication; localizes to the transitional and late Golgi |
ensLOC | DeepLoc | |||||||||||||||||||||||
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Localization | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | WT1 | WT2 | WT3 | AF100 | AF140 | AF180 |
Cortical Patches | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 5 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud | 0 | 1 | 0 | 0 | 0 | 1 | 0 | 2 | 1 | 0 | 2 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 3 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | – | – | – | – | – | – |
Cell Periphery | 3 | 5 | 0 | 2 | 0 | 3 | 3 | 9 | 15 | 20 | 20 | 20 | 1 | 1 | 1 | 4 | 3 | 6 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 550 | 446 | 284 | 255 | 383 | 326 | 380 | 467 | 341 | 349 | 284 | 338 | 317 | 372 | 445 | 211 | 181 | 172 | 537 | 432 | 261 | 236 | 298 | 406 |
Endoplasmic Reticulum | 1 | 0 | 2 | 1 | 2 | 8 | 21 | 8 | 12 | 15 | 17 | 8 | 6 | 7 | 6 | 3 | 6 | 3 | 0 | 1 | 3 | 1 | 2 | 7 |
Endosome | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 1 |
Golgi | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 4 | 0 | 0 |
Mitochondria | 1 | 0 | 1 | 0 | 2 | 18 | 28 | 38 | 56 | 55 | 98 | 81 | 0 | 0 | 0 | 1 | 1 | 1 | 0 | 0 | 0 | 1 | 2 | 2 |
Nucleus | 0 | 1 | 0 | 1 | 2 | 3 | 10 | 18 | 13 | 8 | 11 | 15 | 3 | 0 | 4 | 2 | 0 | 0 | 1 | 1 | 1 | 1 | 1 | 3 |
Nuclear Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 4 | 2 | 3 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
Nucleolus | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 0 | 1 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Peroxisomes | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Vac/Vac Membrane | 4 | 0 | 0 | 11 | 12 | 22 | 44 | 63 | 60 | 104 | 37 | 33 | 0 | 1 | 3 | 3 | 3 | 0 | 6 | 0 | 0 | 3 | 4 | 8 |
Unique Cell Count | 558 | 447 | 286 | 258 | 396 | 371 | 471 | 585 | 461 | 511 | 425 | 473 | 322 | 378 | 454 | 217 | 183 | 173 | 554 | 440 | 275 | 253 | 317 | 442 |
Labelled Cell Count | 562 | 453 | 287 | 270 | 401 | 382 | 488 | 610 | 502 | 559 | 473 | 501 | 327 | 381 | 459 | 224 | 194 | 182 | 554 | 440 | 275 | 253 | 317 | 442 |
Screen | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | AF100 | AF140 | AF180 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Mean Cell GFP Intensity (1e-4) | 16.9 | 17.5 | 13.8 | 13.0 | 12.2 | 10.9 | 10.3 | 10.4 | 10.1 | 9.8 | 9.6 | 9.9 | 15.3 | 14.3 | 14.4 | 21.4 | 21.6 | 21.0 | 16.5 | 17.3 | 16.8 |
Std Deviation (1e-4) | 2.3 | 2.6 | 2.3 | 2.1 | 1.9 | 1.9 | 2.0 | 2.0 | 2.0 | 2.0 | 2.0 | 2.2 | 2.2 | 2.1 | 2.0 | 4.6 | 5.2 | 5.0 | 2.4 | 2.7 | 3.0 |
Intensity Change (Log2) | – | – | – | -0.08 | -0.18 | -0.34 | -0.42 | -0.4 | -0.45 | -0.49 | -0.53 | -0.48 | 0.15 | 0.06 | 0.07 | 0.64 | 0.65 | 0.61 | 0.26 | 0.33 | 0.29 |
Localization | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Cortical Patches | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cell Periphery | 0 | 0 | 0 | 0 | 0 | 3.1 | 3.4 | 3.7 | 3.5 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | -0.6 | -2.3 | -5.6 | -7.6 | -7.8 | -9.1 | -10.4 | -10.6 | -9.7 | -1.0 | -1.0 | -1.4 | -1.8 | -0.5 | 0.2 |
Endoplasmic Reticulum | 0 | 0 | 0 | 2.9 | 0 | 1.9 | 2.1 | 2.7 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Endosome | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Golgi | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Mitochondria | 0 | 0 | 3.4 | 3.9 | 4.1 | 5.9 | 5.5 | 8.6 | 7.2 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleus | 0 | 0 | 0 | 0 | 3.0 | 0 | 0 | 0 | 3.0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nuclear Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleolus | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Peroxisomes | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Vacuole | 3.5 | 3.0 | 4.2 | 5.3 | 5.8 | 6.4 | 8.2 | 5.1 | 4.6 | 0 | 0 | 0 | 0 | 0 | 0 |
R1 | R2 | R3 | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Concentration | 9.5265 | 11.6086 | 10.848 | 9.7686 | 10.2649 | 10.8992 | 11.8519 | 14.2765 | 13.2406 | 13.6771 | 13.1104 | 13.2121 | 9.7139 | 12.8538 | 10.9447 | 10.7472 | 9.8253 | 11.7417 |
Actin | 0.0224 | 0.0005 | 0.0004 | 0.0118 | 0.0044 | 0.0004 | 0.0442 | 0.0004 | 0.0104 | 0.0002 | 0.0003 | 0.0035 | 0.0152 | 0.0001 | 0.0105 | 0.0014 | 0.011 | 0.0025 |
Bud | 0.0002 | 0.0001 | 0.0001 | 0.0006 | 0.0004 | 0.0001 | 0.0004 | 0.0001 | 0.0001 | 0.0001 | 0 | 0.0001 | 0.0003 | 0 | 0.0003 | 0.0001 | 0.0002 | 0.0002 |
Bud Neck | 0.0008 | 0.0002 | 0.0003 | 0.0034 | 0.0008 | 0.0007 | 0.0045 | 0.0002 | 0.0003 | 0.0006 | 0.0004 | 0.0011 | 0.0006 | 0.0001 | 0.0006 | 0.0004 | 0.0005 | 0.0011 |
Bud Periphery | 0.0001 | 0 | 0 | 0.0021 | 0.0007 | 0 | 0.0007 | 0 | 0 | 0 | 0 | 0 | 0.0004 | 0 | 0.0004 | 0 | 0.0003 | 0.0002 |
Bud Site | 0.0011 | 0.0004 | 0.0001 | 0.0058 | 0.0004 | 0 | 0.002 | 0.0001 | 0.0001 | 0 | 0 | 0 | 0.0004 | 0.0001 | 0.0008 | 0.0001 | 0.0004 | 0.0001 |
Cell Periphery | 0.0001 | 0 | 0 | 0.0016 | 0.0001 | 0 | 0.0005 | 0 | 0 | 0 | 0 | 0 | 0.0001 | 0 | 0.0001 | 0 | 0.0001 | 0 |
Cytoplasm | 0.8983 | 0.9798 | 0.9784 | 0.8537 | 0.8854 | 0.9545 | 0.864 | 0.9874 | 0.9759 | 0.9732 | 0.983 | 0.9618 | 0.9069 | 0.9884 | 0.955 | 0.9708 | 0.7502 | 0.9516 |
Cytoplasmic Foci | 0.0109 | 0.0014 | 0.0011 | 0.0078 | 0.0052 | 0.0014 | 0.0183 | 0.0007 | 0.0008 | 0.0011 | 0.001 | 0.0027 | 0.0063 | 0.0005 | 0.0071 | 0.0042 | 0.0077 | 0.0018 |
Eisosomes | 0.0002 | 0 | 0 | 0.0009 | 0 | 0 | 0.0007 | 0 | 0 | 0 | 0 | 0 | 0.0001 | 0 | 0 | 0 | 0.0002 | 0 |
Endoplasmic Reticulum | 0.0045 | 0.0007 | 0.0013 | 0.0092 | 0.0039 | 0.0035 | 0.0041 | 0.0008 | 0.0008 | 0.0005 | 0.001 | 0.0029 | 0.0074 | 0.0011 | 0.001 | 0.0036 | 0.0051 | 0.0024 |
Endosome | 0.0101 | 0.0004 | 0.0004 | 0.015 | 0.0173 | 0.0025 | 0.0154 | 0.0004 | 0.0003 | 0.0002 | 0.0003 | 0.0031 | 0.0132 | 0.0003 | 0.004 | 0.0043 | 0.073 | 0.0031 |
Golgi | 0.0017 | 0.0001 | 0 | 0.0019 | 0.0013 | 0.0001 | 0.0027 | 0 | 0.0001 | 0 | 0 | 0.0004 | 0.0036 | 0 | 0.0026 | 0.0005 | 0.04 | 0.0005 |
Lipid Particles | 0.0018 | 0 | 0 | 0.0021 | 0.0008 | 0 | 0.0022 | 0 | 0 | 0 | 0 | 0.0003 | 0.0014 | 0 | 0.0025 | 0.0001 | 0.049 | 0.0002 |
Mitochondria | 0.0007 | 0.0001 | 0.0001 | 0.0017 | 0.0011 | 0.0001 | 0.0009 | 0.0001 | 0.0001 | 0.0001 | 0.0001 | 0.0002 | 0.0056 | 0 | 0.001 | 0.0006 | 0.0229 | 0.0136 |
None | 0.0055 | 0.0009 | 0.002 | 0.006 | 0.0029 | 0.0009 | 0.0189 | 0.0009 | 0.0011 | 0.0009 | 0.0014 | 0.0014 | 0.0066 | 0.0007 | 0.0014 | 0.0018 | 0.0009 | 0.0009 |
Nuclear Periphery | 0.0097 | 0.0017 | 0.0014 | 0.0144 | 0.0109 | 0.0058 | 0.0037 | 0.0012 | 0.0009 | 0.0011 | 0.0017 | 0.0027 | 0.0081 | 0.0009 | 0.0008 | 0.0016 | 0.0046 | 0.0026 |
Nucleolus | 0.0002 | 0 | 0 | 0.0007 | 0.0005 | 0 | 0.0002 | 0 | 0 | 0 | 0 | 0 | 0.0001 | 0 | 0 | 0 | 0.0001 | 0 |
Nucleus | 0.0233 | 0.0129 | 0.0137 | 0.0551 | 0.0345 | 0.0285 | 0.0086 | 0.0072 | 0.0084 | 0.0214 | 0.01 | 0.0177 | 0.0185 | 0.0073 | 0.0076 | 0.0092 | 0.0235 | 0.0182 |
Peroxisomes | 0.0012 | 0 | 0 | 0.0006 | 0.0005 | 0 | 0.0025 | 0 | 0 | 0 | 0 | 0.0001 | 0.0009 | 0 | 0.0033 | 0.0004 | 0.0047 | 0.0002 |
Punctate Nuclear | 0.0048 | 0.0004 | 0.0004 | 0.0019 | 0.007 | 0.0006 | 0.0037 | 0.0003 | 0.0003 | 0.0004 | 0.0006 | 0.0014 | 0.0013 | 0.0002 | 0.0006 | 0.0005 | 0.0007 | 0.0005 |
Vacuole | 0.002 | 0.0003 | 0.0003 | 0.003 | 0.018 | 0.0007 | 0.0013 | 0.0001 | 0.0001 | 0.0001 | 0.0001 | 0.0003 | 0.0014 | 0.0001 | 0.0003 | 0.0004 | 0.0025 | 0.0003 |
Vacuole Periphery | 0.0005 | 0.0001 | 0 | 0.0008 | 0.0037 | 0.0002 | 0.0004 | 0 | 0 | 0 | 0 | 0.0001 | 0.0017 | 0 | 0.0001 | 0.0001 | 0.0023 | 0.0002 |
R1 | R2 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Gene Expression | 55.006 | 60.1807 | 104.562 | 110.9325 | 62.8022 | 47.5908 | 73.8346 | 94.1576 | 97.2532 | 73.59 |
Translational Efficiency | 2.3032 | 2.6263 | 1.8616 | 1.7782 | 2.3631 | 2.5089 | 2.4316 | 1.9305 | 1.8968 | 1.9458 |
Dataset | Hit |
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Protein Concentration | ✘ |
Protein Localization | ✘ |
Gene Expression | ✔ |
Translational Efficiency | ✘ |
Temp | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Vph1-GFP) |
---|---|---|---|---|
37℃ | ||||
RT |
Gene / Allele | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Sac6-tdTomato) |
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Gene | Images |
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Gene | Images |
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