Standard name
Description Central component of GID Complex, involved in FBPase degradation; interacts strongly with Gid8p to serve as a scaffold for other GID Complex subunits; contains SPRY domain and 3 domains that are also found in Gid8p - LisH, CTLH, and CRA; required for association of Vid vesicles and actin patches in vacuole import and degradation pathway; shifts the balance of nitrogen metabolism toward glutamate production; localizes to the nucleus and the cytoplasm
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ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.07 0.06
Bud Neck 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bud Site 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 – – – – – –
Cell Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Cytoplasm 0.26 0.31 0.29 0.32 0.32 0.32 0.24 0.24 0.31 0.26 0.26 0.26 0.35 0.35 0.36 0.37 0.35 0.31 0.18 0.3 0.24 0.31 0.24 0.2
Endoplasmic Reticulum 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.05 0 0 0 0 0 0 0
Endosome 0.11 0 0 0 0 0 0 0 0 0 0 0 0 0.05 0 0.08 0.11 0.08 0 0 0 0 0.05 0
Golgi 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Mitochondria 0 0.47 0.48 0.64 0.38 0.55 0.62 0.65 0.68 0.7 0.74 0.76 0.35 0.07 0.16 0 0 0 0 0 0.08 0 0.05 0
Nucleus 0.34 0.09 0.12 0.13 0.19 0.13 0.22 0.19 0.19 0.16 0.14 0.12 0.05 0.18 0.13 0.11 0.12 0.14 0.38 0.31 0.26 0.29 0.24 0.2
Nuclear Periphery 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Nucleolus 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Peroxisomes 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
SpindlePole 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.05 0 0 0 0 0.05
Vac/Vac Membrane 0.53 0.31 0.21 0.13 0.23 0.19 0.16 0.17 0.11 0.14 0.11 0.16 0.45 0.47 0.45 0.55 0.58 0.61 0.24 0.19 0.29 0.18 0.26 0.31
ensLOC DeepLoc
Localization WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 WT1 WT2 WT3 AF100 AF140 AF180
Cortical Patches 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0
Bud 0 0 4 8 0 4 5 11 4 13 6 6 0 0 2 0 0 0 2 3 1 1 7 5
Bud Neck 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 2
Bud Site 0 0 0 1 1 0 3 11 1 6 6 7 0 0 0 0 0 0 – – – – – –
Cell Periphery 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0
Cytoplasm 12 14 60 74 86 102 108 131 83 87 69 96 7 48 60 120 92 100 15 29 74 9 26 18
Endoplasmic Reticulum 0 1 2 0 1 0 0 1 1 0 0 1 0 0 1 9 14 11 0 0 2 1 0 2
Endosome 5 0 0 1 8 2 5 3 0 0 1 0 0 7 4 26 30 26 3 1 7 1 5 2
Golgi 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 1 0 0 1 0 0 0 0
Mitochondria 0 21 99 145 103 174 274 352 181 234 198 284 7 10 26 4 1 7 1 3 25 0 5 2
Nucleus 16 4 25 29 52 42 98 102 50 53 37 44 1 25 21 37 33 44 33 30 82 8 26 18
Nuclear Periphery 0 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
Nucleolus 0 0 0 1 1 0 3 4 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1
Peroxisomes 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
SpindlePole 0 0 1 1 2 0 2 2 1 2 1 0 0 0 0 0 1 2 4 4 11 1 4 4
Vac/Vac Membrane 25 14 43 30 61 61 72 95 30 48 29 59 9 66 75 179 155 195 21 18 89 5 28 28
Unique Cell Count 47 45 208 228 269 314 441 543 266 333 266 375 20 139 166 323 265 322 89 99 312 30 109 92
Labelled Cell Count 58 54 235 290 316 385 572 714 353 443 347 499 24 156 189 376 327 387 89 99 312 30 109 92


Cytoplasm, Nucleus

(Huh et al. Nature 2003 425:686)
Screen WT1 WT2 WT3 RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3 AF100 AF140 AF180
Mean Cell GFP Intensity (1e-4) 6.2 3.8 3.7 3.5 4.2 3.9 3.7 3.8 3.5 3.6 3.6 3.3 4.6 5.4 4.8 7.4 7.7 8.0 – 4.8 6.4
Std Deviation (1e-4) 1.0 0.6 0.6 0.8 1.3 1.0 1.0 1.0 1.1 1.4 1.2 1.0 0.8 1.6 1.2 1.1 1.4 1.6 – 0.8 1.6
Intensity Change (Log2) – – – -0.09 0.17 0.05 0.0 0.02 -0.09 -0.05 -0.06 -0.18 0.32 0.54 0.36 0.98 1.04 1.1 – 0.38 0.78


Localization RAP60 RAP140 RAP220 RAP300 RAP380 RAP460 RAP540 RAP620 RAP700 HU80 HU120 HU160 rpd3Δ_1 rpd3Δ_2 rpd3Δ_3
Actin – – – – – – – – – – – – – – –
Bud – – – – – – – – – – – – 0 0 0
Bud Neck – – – – – – – – – – – – 0 0 0
Bud Site – – – – – – – – – – – – 0 0 0
Cell Periphery – – – – – – – – – – – – 0 0 0
Cyto – – – – – – – – – – – – – – –
Endoplasmic Reticulum – – – – – – – – – – – – 0 0 0
Endosome – – – – – – – – – – – – 0 0 0
Golgi – – – – – – – – – – – – 0 0 0
Mitochondria – – – – – – – – – – – – 0 0 0
Nuclear Periphery – – – – – – – – – – – – 0 0 0
Nuc – – – – – – – – – – – – – – –
Nucleolus – – – – – – – – – – – – 0 0 0
Peroxisomes – – – – – – – – – – – – 0 0 0
SpindlePole – – – – – – – – – – – – 0 0 0
Vac – – – – – – – – – – – – – – –
Cortical Patches – – – – – – – – – – – – 0 0 0
Cytoplasm – – – – – – – – – – – – 0 0 0
Nucleus – – – – – – – – – – – – 0 0 0
Vacuole – – – – – – – – – – – – 7.9 8.3 9.0