Standard name | |
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Human Ortholog | |
Description | Vacuolar SNARE protein; functions with Vam3p in vacuolar protein trafficking; has an N-terminal PX domain (phosphoinositide-binding module) that binds PtdIns-3-P and mediates membrane binding; SNAP-25 homolog; protein abundance increases in response to DNA replication stress |
ensLOC | DeepLoc | |||||||||||||||||||||||
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Localization | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | WT1 | WT2 | WT3 | AF100 | AF140 | AF180 |
Cortical Patches | 1 | 11 | 2 | 0 | 0 | 2 | 1 | 1 | 1 | 0 | 1 | 4 | 0 | 3 | 5 | 7 | 4 | 3 | 1 | 9 | 2 | 1 | 1 | 0 |
Bud | 3 | 5 | 13 | 1 | 2 | 15 | 13 | 23 | 12 | 25 | 18 | 20 | 1 | 2 | 3 | 0 | 1 | 0 | 1 | 8 | 3 | 5 | 3 | 8 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 3 | 0 | 0 | 1 | 1 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 1 | 2 | 3 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | – | – | – | – | – | – |
Cell Periphery | 1 | 0 | 0 | 0 | 0 | 1 | 1 | 1 | 0 | 1 | 0 | 3 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 82 | 259 | 124 | 78 | 74 | 212 | 202 | 208 | 151 | 221 | 208 | 226 | 94 | 200 | 230 | 224 | 115 | 108 | 54 | 50 | 17 | 29 | 19 | 36 |
Endoplasmic Reticulum | 2 | 15 | 7 | 1 | 6 | 11 | 7 | 6 | 5 | 1 | 8 | 10 | 3 | 0 | 2 | 14 | 7 | 6 | 1 | 3 | 0 | 0 | 4 | 7 |
Endosome | 24 | 236 | 181 | 72 | 84 | 101 | 129 | 124 | 106 | 207 | 72 | 111 | 164 | 220 | 205 | 133 | 85 | 101 | 38 | 432 | 224 | 186 | 230 | 289 |
Golgi | 0 | 3 | 0 | 0 | 1 | 0 | 1 | 3 | 0 | 0 | 2 | 0 | 1 | 0 | 1 | 8 | 3 | 1 | 1 | 5 | 1 | 0 | 0 | 5 |
Mitochondria | 3 | 3 | 4 | 4 | 19 | 69 | 111 | 144 | 138 | 132 | 180 | 187 | 0 | 0 | 0 | 10 | 5 | 1 | 2 | 5 | 2 | 5 | 5 | 2 |
Nucleus | 0 | 1 | 0 | 0 | 1 | 2 | 1 | 2 | 0 | 0 | 0 | 1 | 0 | 1 | 0 | 0 | 0 | 1 | 0 | 5 | 0 | 2 | 2 | 1 |
Nuclear Periphery | 1 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 2 | 4 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 7 | 6 | 2 | 4 | 8 |
Nucleolus | 3 | 17 | 18 | 4 | 2 | 8 | 12 | 19 | 9 | 21 | 20 | 10 | 16 | 18 | 26 | 11 | 8 | 7 | 0 | 2 | 0 | 1 | 0 | 1 |
Peroxisomes | 0 | 0 | 1 | 4 | 0 | 0 | 5 | 1 | 6 | 2 | 1 | 3 | 3 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
SpindlePole | 5 | 25 | 21 | 13 | 3 | 10 | 22 | 20 | 23 | 24 | 8 | 12 | 46 | 69 | 47 | 19 | 9 | 14 | 3 | 23 | 18 | 21 | 21 | 44 |
Vac/Vac Membrane | 17 | 305 | 107 | 28 | 47 | 37 | 39 | 56 | 65 | 94 | 59 | 71 | 163 | 171 | 129 | 121 | 75 | 91 | 32 | 173 | 77 | 79 | 60 | 79 |
Unique Cell Count | 124 | 668 | 344 | 158 | 201 | 391 | 439 | 487 | 401 | 585 | 473 | 546 | 356 | 514 | 506 | 406 | 230 | 242 | 144 | 734 | 360 | 339 | 361 | 493 |
Labelled Cell Count | 142 | 881 | 479 | 205 | 239 | 469 | 544 | 609 | 518 | 732 | 579 | 663 | 491 | 684 | 649 | 547 | 313 | 334 | 144 | 734 | 360 | 339 | 361 | 493 |
Screen | WT1 | WT2 | WT3 | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 | AF100 | AF140 | AF180 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Mean Cell GFP Intensity (1e-4) | 9.0 | 8.6 | 7.2 | 7.0 | 6.5 | 6.4 | 5.6 | 6.0 | 6.1 | 5.9 | 5.8 | 6.0 | 8.8 | 8.7 | 8.8 | 11.4 | 10.7 | 10.8 | 9.4 | 9.6 | 9.8 |
Std Deviation (1e-4) | 2.4 | 1.1 | 1.0 | 1.2 | 1.2 | 1.0 | 0.9 | 1.0 | 1.3 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.0 | 2.0 | 2.1 | 1.7 | 1.3 | 1.4 | 1.5 |
Intensity Change (Log2) | – | – | – | -0.04 | -0.15 | -0.18 | -0.37 | -0.26 | -0.25 | -0.29 | -0.31 | -0.28 | 0.28 | 0.27 | 0.28 | 0.65 | 0.57 | 0.58 | 0.38 | 0.4 | 0.44 |
Localization | RAP60 | RAP140 | RAP220 | RAP300 | RAP380 | RAP460 | RAP540 | RAP620 | RAP700 | HU80 | HU120 | HU160 | rpd3Δ_1 | rpd3Δ_2 | rpd3Δ_3 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Cortical Patches | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud | 0 | -1.9 | 0 | -0.6 | 0.7 | -0.6 | 0.4 | 0 | -0.1 | -3.3 | -3.7 | -3.4 | -4.0 | -2.5 | -3.1 |
Bud Neck | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Bud Site | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cell Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Cytoplasm | 2.8 | 0.2 | 4.9 | 2.8 | 1.9 | 0.5 | 0.5 | 2.3 | 1.6 | -2.8 | 0.8 | 2.7 | 5.2 | 3.3 | 2.1 |
Endoplasmic Reticulum | 0 | 0 | 0.7 | -0.5 | -0.9 | -0.9 | 0 | -0.4 | -0.2 | 0 | 0 | 0 | 1.2 | 0.8 | 0.4 |
Endosome | -1.5 | -2.4 | -7.5 | -6.6 | -8.0 | -7.3 | -5.1 | -11.4 | -10.0 | -1.7 | -2.8 | -3.5 | -5.5 | -3.7 | -2.6 |
Golgi | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Mitochondria | 0 | 4.6 | 7.5 | 9.5 | 10.5 | 11.5 | 8.9 | 12.5 | 11.7 | 0 | 0 | 0 | 1.3 | 0 | 0 |
Nucleus | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nuclear Periphery | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Nucleolus | -1.4 | -2.5 | -2.3 | -1.8 | -0.9 | -2.2 | -1.2 | -0.7 | -2.8 | -0.5 | -1.2 | -0.1 | -1.8 | -1.0 | -1.4 |
Peroxisomes | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SpindlePole | 0.9 | -2.5 | -2.4 | -0.7 | -1.3 | -0.2 | -1.4 | -3.4 | -3.0 | 3.1 | 3.4 | 1.7 | -0.9 | -1.2 | -0.2 |
Vacuole | -3.1 | -1.9 | -7.4 | -7.9 | -7.0 | -4.8 | -5.4 | -6.5 | -6.6 | 4.0 | 0.7 | -1.8 | -0.4 | 0.4 | 1.6 |
R1 | R2 | R3 | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Pre-START | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Concentration | 3.1686 | 4.0149 | 3.7482 | 3.7297 | 3.3287 | 3.6133 | 5.9904 | 6.756 | 6.8184 | 6.36 | 6.5941 | 6.7711 | 3.8426 | 5.0096 | 4.6721 | 4.7037 | 4.0827 | 4.3499 |
Actin | 0.0038 | 0.0002 | 0.0002 | 0.0005 | 0.0002 | 0.0002 | 0.0048 | 0.0002 | 0.0002 | 0.0007 | 0 | 0.0004 | 0.0212 | 0.0001 | 0.0145 | 0.0073 | 0.0026 | 0.004 |
Bud | 0.0072 | 0.0088 | 0.0049 | 0.0151 | 0.0007 | 0.0012 | 0.0003 | 0.001 | 0.0007 | 0.0037 | 0.0005 | 0.0004 | 0.0007 | 0.0004 | 0.0005 | 0.0054 | 0.0009 | 0.0005 |
Bud Neck | 0.0022 | 0.0011 | 0.0015 | 0.0004 | 0.0012 | 0.0034 | 0.0006 | 0.0012 | 0.0009 | 0.0004 | 0.0007 | 0.0012 | 0.0031 | 0.001 | 0.0015 | 0.0013 | 0.0008 | 0.0014 |
Bud Periphery | 0.0029 | 0.0011 | 0.0016 | 0.0054 | 0.0002 | 0.0005 | 0.0001 | 0.0004 | 0.0005 | 0.0014 | 0.0002 | 0.0003 | 0.0009 | 0.0002 | 0.0003 | 0.0038 | 0.0017 | 0.0004 |
Bud Site | 0.0139 | 0.0065 | 0.005 | 0.0018 | 0.0008 | 0.0026 | 0.0009 | 0.0049 | 0.0014 | 0.0009 | 0.0026 | 0.0007 | 0.0049 | 0.0035 | 0.0038 | 0.0063 | 0.0023 | 0.0007 |
Cell Periphery | 0.0003 | 0.0001 | 0.0002 | 0.0003 | 0 | 0.0001 | 0.0001 | 0.0001 | 0.0001 | 0 | 0 | 0 | 0.0003 | 0.0002 | 0.0001 | 0.0002 | 0.0002 | 0.0001 |
Cytoplasm | 0.2626 | 0.3255 | 0.3033 | 0.2027 | 0.1679 | 0.2782 | 0.1694 | 0.2967 | 0.2316 | 0.2492 | 0.1217 | 0.1616 | 0.1294 | 0.2854 | 0.2327 | 0.2282 | 0.1304 | 0.1986 |
Cytoplasmic Foci | 0.1816 | 0.1855 | 0.2124 | 0.2217 | 0.2639 | 0.2281 | 0.1981 | 0.1999 | 0.2319 | 0.2809 | 0.2178 | 0.2729 | 0.1784 | 0.145 | 0.1571 | 0.1786 | 0.2067 | 0.1982 |
Eisosomes | 0.0001 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.0003 | 0 | 0 | 0 | 0.0001 | 0 |
Endoplasmic Reticulum | 0.0042 | 0.0035 | 0.0031 | 0.0016 | 0.0015 | 0.0028 | 0.0042 | 0.0036 | 0.003 | 0.0024 | 0.0049 | 0.0033 | 0.0041 | 0.0038 | 0.0032 | 0.006 | 0.0033 | 0.0041 |
Endosome | 0.3589 | 0.3294 | 0.3417 | 0.3949 | 0.4253 | 0.3473 | 0.5103 | 0.375 | 0.439 | 0.4074 | 0.53 | 0.4395 | 0.4232 | 0.3526 | 0.4361 | 0.3663 | 0.4461 | 0.4133 |
Golgi | 0.0072 | 0.008 | 0.0101 | 0.0072 | 0.0114 | 0.0076 | 0.0115 | 0.0106 | 0.0133 | 0.0151 | 0.0102 | 0.0149 | 0.0238 | 0.0096 | 0.0125 | 0.0064 | 0.0098 | 0.0107 |
Lipid Particles | 0.01 | 0.0099 | 0.0058 | 0.0047 | 0.0069 | 0.0049 | 0.0082 | 0.0057 | 0.0101 | 0.0064 | 0.0027 | 0.0072 | 0.0551 | 0.0226 | 0.0118 | 0.0024 | 0.0097 | 0.0088 |
Mitochondria | 0.0013 | 0.0014 | 0.0023 | 0.0021 | 0.001 | 0.0014 | 0.0008 | 0.0023 | 0.0011 | 0.0012 | 0.0031 | 0.0026 | 0.0104 | 0.0018 | 0.0012 | 0.0025 | 0.0103 | 0.0089 |
None | 0.0467 | 0.0135 | 0.0184 | 0.0688 | 0.0093 | 0.0224 | 0.0073 | 0.0131 | 0.0106 | 0.0056 | 0.0012 | 0.017 | 0.0154 | 0.0091 | 0.0028 | 0.006 | 0.0022 | 0.0022 |
Nuclear Periphery | 0.0057 | 0.0088 | 0.0076 | 0.0045 | 0.0043 | 0.0058 | 0.0039 | 0.0034 | 0.0054 | 0.0009 | 0.0025 | 0.0035 | 0.0048 | 0.0041 | 0.0035 | 0.0217 | 0.0347 | 0.0106 |
Nucleolus | 0.0011 | 0.0035 | 0.0044 | 0.0021 | 0.0009 | 0.0017 | 0.0003 | 0.0011 | 0.0005 | 0.0001 | 0.0002 | 0.0005 | 0.0018 | 0.0052 | 0.0032 | 0.0007 | 0.0067 | 0.001 |
Nucleus | 0.015 | 0.014 | 0.019 | 0.0076 | 0.0089 | 0.0151 | 0.0082 | 0.0074 | 0.0047 | 0.0011 | 0.0016 | 0.0059 | 0.0073 | 0.0097 | 0.0166 | 0.0119 | 0.017 | 0.0171 |
Peroxisomes | 0.0104 | 0.0071 | 0.0095 | 0.007 | 0.0111 | 0.0075 | 0.0051 | 0.0053 | 0.0096 | 0.0074 | 0.0273 | 0.012 | 0.0146 | 0.0035 | 0.008 | 0.0023 | 0.0023 | 0.0037 |
Punctate Nuclear | 0.0125 | 0.0072 | 0.0132 | 0.0093 | 0.0202 | 0.0138 | 0.0076 | 0.0107 | 0.004 | 0.001 | 0.0349 | 0.0082 | 0.0134 | 0.0132 | 0.0056 | 0.0179 | 0.0075 | 0.0057 |
Vacuole | 0.0464 | 0.0584 | 0.0305 | 0.0366 | 0.0548 | 0.0458 | 0.052 | 0.05 | 0.026 | 0.0109 | 0.0296 | 0.0357 | 0.0783 | 0.1176 | 0.0755 | 0.108 | 0.0928 | 0.0923 |
Vacuole Periphery | 0.0063 | 0.0064 | 0.0053 | 0.0058 | 0.0096 | 0.0095 | 0.0064 | 0.0073 | 0.0054 | 0.0033 | 0.008 | 0.0121 | 0.0085 | 0.0113 | 0.0093 | 0.017 | 0.012 | 0.0179 |
R1 | R2 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | G1 Post-START | S/G2 | Metaphase | Anaphase | Telophase | |
Gene Expression | 8.7019 | 6.2232 | 8.4661 | 8.4433 | 12.0346 | 12.7558 | 10.7493 | 7.0781 | 10.1604 | 9.4995 |
Translational Efficiency | 2.8595 | 3.6219 | 1.9269 | 2.2133 | 2.138 | 1.8574 | 2.3377 | 3.405 | 1.9294 | 2.0252 |
Dataset | Hit |
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Protein Concentration | ✔ |
Protein Localization | ✘ |
Gene Expression | ✘ |
Translational Efficiency | ✘ |
Temp | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Vph1-GFP) |
---|---|---|---|---|
37℃ | ||||
RT |
Gene / Allele | Actin Patch (Sac6-tdTomato) | Cortical Patch (Sla1-GFP) | Late Endosome (Snf7-GFP) | Vacuole (Sac6-tdTomato) |
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Gene | Images |
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Gene | Images |
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